Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for ssh1a

Gene Name Gene ID Reads Annotation
ssh1a ENSDARG00000056780 3 slingshot protein phosphatase 1a [Source:ZFIN;Acc:ZDB-GENE-040724-201]










Genes with expression patterns similar to ssh1a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ssh1a ENSDARG00000056780 3 5 - - 1.000 1.000 1.000 - - 1.000 1.000 slingshot protein phosphatase 1a [Source:ZFIN;Acc:ZDB-GENE-040724-201]
2. pcdh2g16 1 2 - - - - 1.000 - - - 1.000 protocadherin 2 gamma 16
3. BX294653.4 BX294653.4 1 2 - - - 1.000 1.000 - - - -
4. Vault_1 Vault_1 6 2 - - - 1.000 1.000 - - - -
5. ENSDARG00000088389 ENSDARG00000088389 2 2 - - - - 1.000 - - - 1.000
6. slc5a5 ENSDARG00000005392 6 1.984 - - 0.984 - 1.000 - - - - solute carrier family 5 (sodium/iodide cotransporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-060503-585]
7. CABZ01112331.1 CABZ01112331.1 9 1.866 - - - 0.981 - - - - 0.885
8. fubp3 ENSDARG00000086896 21 1.847 - - - - 1.000 - - 0.847 - far upstream element (FUSE) binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-041121-12]
9. cd247l ENSDARG00000077240 25 1.832 - - 0.832 - 1.000 - - - - CD247 antigen like [Source:ZFIN;Acc:ZDB-GENE-070508-2]
10. ankrd52a ENSDARG00000036826, ENSDARG00000112185 7 1.83 - - - - 0.830 - - 1.000 - ankyrin repeat domain 52a [Source:ZFIN;Acc:ZDB-GENE-050522-247]
11. BX119910.9 BX119910.9 7 1.785 - - - 0.785 1.000 - - - -
12. rtn4rl2b ENSDARG00000037495 11 1.776 - - 1.000 - - - - - 0.776 reticulon 4 receptor-like 2b [Source:ZFIN;Acc:ZDB-GENE-040310-2]
13. vwf ENSDARG00000077231 5 1.733 - - - - 0.733 - - 1.000 - von Willebrand factor [Source:ZFIN;Acc:ZDB-GENE-070103-1]
14. si:ch211-207e19.15 ENSDARG00000113022 5 1.731 - - - 1.000 - - - - 0.731 si:ch211-207e19.15 [Source:ZFIN;Acc:ZDB-GENE-110914-27]
15. TRIM8 TRIM8 5 1.711 - - - - 1.000 - - - 0.711
16. vmhcl 119 1.649 - - - - 0.769 - - - 0.880 ventricular myosin heavy chain-like
17. vmhc 234 1.604 - - - - 0.754 - - - 0.850 ventricular myosin heavy chain
18. C11H3orf83 C11H3orf83 30 1.585 - - 0.859 - - - - 0.726 -
19. nppa ENSDARG00000052960 295 1.563 - - - - 0.748 - - - 0.815 natriuretic peptide A [Source:ZFIN;Acc:ZDB-GENE-030131-95]
20. THSD7B THSD7B 15 1.538 - - - 0.767 - - - 0.771 -
21. nkx2.5 ENSDARG00000018004, ENSDARG00000116714 23 1.516 - - - - 0.714 - - - 0.802 NK2 homeobox 5 [Source:ZFIN;Acc:ZDB-GENE-980526-321]
22. si:dkey-117i10.1 ENSDARG00000062537 3 1 - - - - - - - 1.000 - si:dkey-117i10.1 [Source:ZFIN;Acc:ZDB-GENE-091204-371]
23. LRFN4_1 LRFN4_1 5 1 - - - 1.000 - - - - -
24. si:dkey-71h2.4 si:dkey-71h2.4 6 1 - - 1.000 - - - - - -
25. rxfp3 ENSDARG00000057410, ENSDARG00000110516 1 1 - - - - - - - - 1.000 relaxin family peptide receptor 3 [Source:ZFIN;Acc:ZDB-GENE-080723-67]
26. PLB1 PLB1 20 1 - - 1.000 - - - - - -
27. cdx1a ENSDARG00000114554 28 1 - - 1.000 - - - - - - caudal type homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-050510-1]
28. slc22a7b slc22a7b 11 1 - - - - - - - - 1.000
29. si:dkey-246j6.2 si:dkey-246j6.2 0 1 - - - - 1.000 - - - -
30. CU695216.1 CU695216.1 0 1 - - - - 1.000 - - - -
31. FAM78B FAM78B 1 1 - - - 1.000 - - - - -
32. slc6a19b ENSDARG00000056719 140 1 - - - - - - - 1.000 - solute carrier family 6 (neutral amino acid transporter), member 19b [Source:ZFIN;Acc:ZDB-GENE-030131-4755]
33. pde3a ENSDARG00000004227 6 1 - - - - - - - - 1.000 phosphodiesterase 3A, cGMP-inhibited [Source:ZFIN;Acc:ZDB-GENE-041210-23]
34. entpd8 ENSDARG00000005565 18 1 - - - 1.000 - - - - - ectonucleoside triphosphate diphosphohydrolase 8 [Source:ZFIN;Acc:ZDB-GENE-040724-142]
35. C22H19orf10 C22H19orf10 1 1 - - - 1.000 - - - - -
36. si:dkey-54j5.1 si:dkey-54j5.1 4 1 - - - - - - - - 1.000
37. edn3b ENSDARG00000086669 8 1 - - - - 1.000 - - - - endothelin 3b [Source:ZFIN;Acc:ZDB-GENE-090313-235]
38. gpr65 ENSDARG00000045957 4 1 - - - - - - - 1.000 - G protein-coupled receptor 65 [Source:ZFIN;Acc:ZDB-GENE-120709-81]
39. itga2.2 ENSDARG00000062974 27 1 - - - 1.000 - - - - - integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-091118-70]
40. zgc:109965 ENSDARG00000012126 11 1 - - - - 1.000 - - - - zgc:109965 [Source:ZFIN;Acc:ZDB-GENE-050913-21]
41. htr5a htr5a 4 1 - - - - 1.000 - - - -
42. si:ch73-155e10.1 si:ch73-155e10.1 13 1 - - - - - - - - 1.000
43. CABZ01073069.1 CABZ01073069.1 5 1 - - - - - - - - 1.000
44. CR933791.2 ENSDARG00000052876 1 1 - - - - - - - 1.000 - GTPase IMAP family member 7-like [Source:NCBI gene;Acc:799889]
45. phc2b ENSDARG00000013224 3 1 - - - 1.000 - - - - - polyhomeotic homolog 2b (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-1113]
46. si:ch211-152c8.4 ENSDARG00000101110 6 1 - - 1.000 - - - - - - si:ch211-152c8.4 [Source:ZFIN;Acc:ZDB-GENE-091204-235]
47. RC3H1 RC3H1 22 1 - - - 1.000 - - - - -
48. ZBED1_3 ZBED1_3 7 1 - - - - - - - - 1.000
49. BX546446.1 BX546446.1 0 1 - - - - 1.000 - - - -
50. CU929148.1 CU929148.1 0 1 - - - - 1.000 - - - -
51. mxa ENSDARG00000021688 14 1 - - - 1.000 - - - - - myxovirus (influenza) resistance A [Source:ZFIN;Acc:ZDB-GENE-030721-5]
52. si:ch211-155i14.1 si:ch211-155i14.1 1 1 - - - - - - - - 1.000
53. zgc:172131 ENSDARG00000076269 32 1 - - - - 1.000 - - - - zgc:172131 [Source:ZFIN;Acc:ZDB-GENE-080204-47]
54. mlphb ENSDARG00000062481 14 1 - - - - 1.000 - - - - melanophilin b [Source:ZFIN;Acc:ZDB-GENE-070803-2]
55. si:dkey-208a9.1 si:dkey-208a9.1 3 1 - - - 1.000 - - - - -
56. si:dkey-191j3.2 ENSDARG00000101997 1 1 - - - - - - - 1.000 - si:dkey-191j3.2 [Source:ZFIN;Acc:ZDB-GENE-081103-55]
57. CABZ01058422.1 CABZ01058422.1 0 1 - - - - 1.000 - - - -
58. Metazoa_SRP_24 Metazoa_SRP_24 4 1 - - - - - - - - 1.000
59. KCNJ2 KCNJ2 1 1 - - - - - - - 1.000 -
60. BX663520.1 ENSDARG00000097950 4 1 - - - - - - - 1.000 -
61. col5a2b ENSDARG00000024847 17 1 - - - - 1.000 - - - - collagen, type V, alpha 2b [Source:ZFIN;Acc:ZDB-GENE-110406-2]
62. BX842593.1 BX842593.1 0 1 - - - - 1.000 - - - -
63. si:dkey-47k20.6 si:dkey-47k20.6 2 1 - - 1.000 - - - - - -
64. CR356223.2_1 ENSDARG00000100655 1 1 - - - - 1.000 - - - -
65. cyp2k19 ENSDARG00000101861 129 1 - - - - - - - - 1.000 cytochrome P450, family 2, subfamily k, polypeptide 19 [Source:ZFIN;Acc:ZDB-GENE-091211-1]
66. si:dkey-56m15.4 si:dkey-56m15.4 39 1 - - - - - - - 1.000 -
67. SH3TC1 ENSDARG00000077330 8 1 - - - - 1.000 - - - - SH3 domain and tetratricopeptide repeats 1 [Source:HGNC Symbol;Acc:HGNC:26009]
68. si:dkeyp-68b7.6 si:dkeyp-68b7.6 7 1 - - - - 1.000 - - - -
69. si:dkey-105n5.3 si:dkey-105n5.3 9 1 - - - 1.000 - - - - -
70. grm3 ENSDARG00000031712, ENSDARG00000110535 30 1 - - - - 1.000 - - - - glutamate receptor, metabotropic 3 [Source:ZFIN;Acc:ZDB-GENE-061009-13]
71. olfcg5 ENSDARG00000102459 5 1 - - - - 1.000 - - - - olfactory receptor C family, g5 [Source:ZFIN;Acc:ZDB-GENE-060503-913]
72. CR388002.2 CR388002.2 3 1 - - - - - - - - 1.000
73. si:dkey-252l8.1 si:dkey-252l8.1 2 1 - - - - 1.000 - - - -
74. AL929217.1 ENSDARG00000059891 1 1 - - - - 1.000 - - - - gamma-aminobutyric acid receptor subunit pi-like [Source:NCBI gene;Acc:562831]
75. si:ch211-222m18.4 ENSDARG00000094425 7 1 - - - 1.000 - - - - - si:ch211-222m18.4 [Source:ZFIN;Acc:ZDB-GENE-050419-64]
76. MFAP4_5 MFAP4_5 4 1 - - - - - - - 1.000 -
77. agxtb ENSDARG00000018478 2 1 - - - - - - - - 1.000 alanine--glyoxylate and serine--pyruvate aminotransferase b [Source:ZFIN;Acc:ZDB-GENE-010302-3]
78. C18H15orf48 C18H15orf48 3 1 - - - 1.000 - - - - -
79. chia.4 ENSDARG00000008541 14 1 - - - 1.000 - - - - - chitinase, acidic.4 [Source:ZFIN;Acc:ZDB-GENE-030131-9279]
80. gtf2f2b ENSDARG00000006816 1 1 - - - - 1.000 - - - - general transcription factor IIF, polypeptide 2b [Source:ZFIN;Acc:ZDB-GENE-050417-374]
81. ETS1 ENSDARG00000024431 6 1 - - - - - - - - 1.000 v-ets avian erythroblastosis virus E26 oncogene homolog 1 [Source:ZFIN;Acc:ZDB-GENE-021115-5]
82. si:dkey-111k7.3 si:dkey-111k7.3 0 1 - - - - 1.000 - - - -
83. CABZ01079015.1 CABZ01079015.1 10 1 - - - - - - - - 1.000
84. CR556708.1 ENSDARG00000100565 6 1 - - - - 1.000 - - - - uncharacterized LOC110437832 [Source:NCBI gene;Acc:110437832]
85. CT583625.3 ENSDARG00000095148 0 1 - - - 1.000 - - - - -
86. GALNT8 GALNT8 0 1 - - - 1.000 - - - - -
87. tmem54 tmem54 3 1 - - - - 1.000 - - - -
88. CR927050.1 ENSDARG00000099180 5 1 - - - 1.000 - - - - -
89. MFRP MFRP 6 1 - - - - 1.000 - - - -
90. si:ch73-17k20.1 si:ch73-17k20.1 2 1 - - - - 1.000 - - - -
91. nyx ENSDARG00000061791 2 1 - - 1.000 - - - - - - nyctalopin [Source:ZFIN;Acc:ZDB-GENE-061026-3]
92. gck ENSDARG00000068006 14 1 - - - 1.000 - - - - - glucokinase (hexokinase 4) [Source:ZFIN;Acc:ZDB-GENE-060825-204]
93. MPZL2 MPZL2 31 1 - - - - - - - - 1.000
94. glis1b ENSDARG00000027933 14 1 - - - - 1.000 - - - - GLIS family zinc finger 1b [Source:ZFIN;Acc:ZDB-GENE-081105-172]
95. c6ast4 ENSDARG00000052578 6 1 - - - 1.000 - - - - - six-cysteine containing astacin protease 4 [Source:ZFIN;Acc:ZDB-GENE-050626-100]
96. CR388160.3 CR388160.3 0 1 - - - - 1.000 - - - -
97. CR753886.1 ENSDARG00000090548 22 1 - - - 1.000 - - - - - prolactin releasing hormone 2 [Source:NCBI gene;Acc:793765]
98. sele ENSDARG00000009123 122 1 - - - - 1.000 - - - - selectin E [Source:ZFIN;Acc:ZDB-GENE-041014-221]
99. si:dkey-121j17.5 ENSDARG00000014232 18 1 - - 1.000 - - - - - - si:dkey-121j17.5 [Source:ZFIN;Acc:ZDB-GENE-030131-4745]
100. utrnp 0 1 - - - - 1.000 - - - - utrophin, pseudogene

There are 472 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA