Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for ssbp4

Gene Name Gene ID Reads Annotation
ssbp4 ENSDARG00000056483 10196 single stranded DNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-030131-469]










Genes with expression patterns similar to ssbp4

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ssbp4 ENSDARG00000056483 10196 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 single stranded DNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-030131-469]
2. TNRC6C_1 TNRC6C_1 6574 4.189 - - 0.828 0.783 - 0.840 - 0.767 0.971
3. snrpc ENSDARG00000009871 9567 3.296 - - - 0.782 0.857 - 0.896 0.761 - small nuclear ribonucleoprotein polypeptide C [Source:ZFIN;Acc:ZDB-GENE-020419-26]
4. uba1 ENSDARG00000037559 11579 3.289 - 0.794 - 0.747 - 0.822 0.926 - - ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
5. pou3f3a ENSDARG00000042032 2835 3.265 0.805 - 0.907 - - 0.806 0.747 - - POU class 3 homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-980526-220]
6. chd7 ENSDARG00000075211 12085 3.251 - - - 0.850 - 0.874 0.791 0.736 - chromodomain helicase DNA binding protein 7 [Source:ZFIN;Acc:ZDB-GENE-070912-179]
7. h2afva ENSDARG00000068820 16427 3.214 - - - 0.761 - 0.917 0.829 0.707 - H2A histone family, member Va [Source:ZFIN;Acc:ZDB-GENE-020717-1]
8. dut ENSDARG00000106529 3120 3.188 0.757 - 0.866 - - - 0.860 0.705 - deoxyuridine triphosphatase [Source:ZFIN;Acc:ZDB-GENE-041010-93]
9. zswim5 ENSDARG00000055900 4243 3.148 0.775 - 0.865 - - - 0.736 0.772 - zinc finger, SWIM-type containing 5 [Source:ZFIN;Acc:ZDB-GENE-030925-30]
10. TAF15 ENSDARG00000070019 5102 3.147 - 0.705 - - - 0.818 0.801 0.823 - TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-061215-102]
11. fam60al 2846 3.136 0.741 - - 0.829 - - 0.775 0.791 - family with sequence similarity 60, member A, like
12. snrpa ENSDARG00000018890 4593 3.133 - - - 0.709 0.834 0.776 - 0.814 - small nuclear ribonucleoprotein polypeptide A [Source:ZFIN;Acc:ZDB-GENE-030131-2841]
13. brd3b ENSDARG00000100129 6387 3.114 - - 0.812 - - 0.763 0.793 0.746 - bromodomain containing 3b [Source:ZFIN;Acc:ZDB-GENE-030131-5316]
14. lypla2 ENSDARG00000053656 8971 3.098 - 0.729 0.793 - - 0.726 0.850 - - lysophospholipase II [Source:ZFIN;Acc:ZDB-GENE-040426-1715]
15. pcdh19 ENSDARG00000034344 2378 3.066 - 0.707 - 0.760 - 0.813 - 0.786 - protocadherin 19 [Source:ZFIN;Acc:ZDB-GENE-030131-4218]
16. RLTPR 1158 3.041 0.751 - - - - 0.770 0.750 0.770 - RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing, transcript variant X1
17. u2af2b ENSDARG00000011740 6946 3.019 - - - 0.767 - 0.731 0.749 0.772 - U2 small nuclear RNA auxiliary factor 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1881]
18. pl10 pl10 10795 2.892 - 0.702 - - 0.724 0.714 0.752 - -
19. prmt1 ENSDARG00000010246 11311 2.875 0.707 0.702 - - - 0.717 0.749 - - protein arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-693]
20. h3f3a 66671 2.56 0.713 - - - - - 0.936 0.911 - H3 histone, family 3A, transcript variant X1
21. chd4a ENSDARG00000063535, ENSDARG00000111791 4059 2.548 - - - 0.832 - 0.851 0.865 - - chromodomain helicase DNA binding protein 4a [Source:ZFIN;Acc:ZDB-GENE-041111-187]
22. pnisr ENSDARG00000069855, ENSDARG00000116449 3465 2.513 - 0.737 0.910 - - - 0.866 - - PNN-interacting serine/arginine-rich protein [Source:ZFIN;Acc:ZDB-GENE-030131-362]
23. pbx4 ENSDARG00000052150 35676 2.504 - 0.852 - - - - 0.877 0.775 - pre-B-cell leukemia transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-000201-18]
24. marcksa ENSDARG00000004049 2518 2.494 - - - - - 0.795 0.773 0.926 - myristoylated alanine-rich protein kinase C substrate a [Source:ZFIN;Acc:ZDB-GENE-050522-145]
25. snrpe ENSDARG00000033175 7462 2.491 - - - - 0.851 - 0.834 0.806 - small nuclear ribonucleoprotein polypeptide E [Source:ZFIN;Acc:ZDB-GENE-040426-1112]
26. dnajc5aa ENSDARG00000042948 2885 2.49 - - 0.910 - - 0.846 0.734 - - DnaJ (Hsp40) homolog, subfamily C, member 5aa [Source:ZFIN;Acc:ZDB-GENE-031113-20]
27. tardbpl ENSDARG00000004452, ENSDARG00000116205 12160 2.484 - - - - 0.859 0.805 0.820 - - TAR DNA binding protein, like [Source:ZFIN;Acc:ZDB-GENE-031030-1]
28. nat8l ENSDARG00000077256, ENSDARG00000115322 3513 2.474 - - - - 0.846 0.830 - 0.798 - N-acetyltransferase 8-like [Source:ZFIN;Acc:ZDB-GENE-030729-4]
29. TUSC3 ENSDARG00000078854 1021 2.467 - - 0.918 - - 0.831 0.718 - - tumor suppressor candidate 3 [Source:ZFIN;Acc:ZDB-GENE-050522-381]
30. znf207b ENSDARG00000101277, ENSDARG00000110098, ENSDARG00000115586 4227 2.462 - - - - - 0.728 0.778 - 0.956 zinc finger protein 207, b [Source:ZFIN;Acc:ZDB-GENE-030131-7377]
31. arnt2 ENSDARG00000103697 5731 2.442 - - - - - 0.866 0.765 0.811 - aryl-hydrocarbon receptor nuclear translocator 2 [Source:ZFIN;Acc:ZDB-GENE-001207-3]
32. whsc1l1 8544 2.439 - - - - - 0.916 0.789 0.734 - Wolf-Hirschhorn syndrome candidate 1-like 1, transcript variant X2
33. smarca4 smarca4 9726 2.438 - - - 0.710 - 0.910 0.818 - -
34. tcea1 ENSDARG00000003531 2912 2.434 - - - 0.838 - - 0.801 0.795 - transcription elongation factor A (SII), 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8049]
35. FP016176.1 FP016176.1 7030 2.417 - 0.740 - - - 0.844 0.833 - -
36. arl6ip4 ENSDARG00000105036, ENSDARG00000110324, ENSDARG00000116805 1142 2.417 - - 0.915 0.707 - - - 0.795 - ADP-ribosylation factor-like 6 interacting protein 4 [Source:ZFIN;Acc:ZDB-GENE-050522-405]
37. srsf3a ENSDARG00000025397, ENSDARG00000100815 11622 2.416 - - - - - 0.705 0.906 0.805 - serine/arginine-rich splicing factor 3a [Source:ZFIN;Acc:ZDB-GENE-030616-631]
38. hexim1 ENSDARG00000036482 4317 2.411 - - 0.870 - - - 0.822 0.719 - hexamethylene bis-acetamide inducible 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4637]
39. HNRNPA2B1 HNRNPA2B1 14997 2.398 - - - 0.733 - - 0.926 0.739 -
40. ewsr1a ENSDARG00000020258, ENSDARG00000113252 11221 2.398 - - 0.804 - - - 0.850 0.744 - EWS RNA-binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2317]
41. hmgb3a ENSDARG00000056725 15668 2.396 0.763 - - - - 0.772 0.861 - - high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
42. cltcb ENSDARG00000090716 5544 2.393 - - - - 0.854 0.739 0.800 - - clathrin, heavy chain b (Hc) [Source:ZFIN;Acc:ZDB-GENE-050227-12]
43. atrx ENSDARG00000042236, ENSDARG00000112921, ENSDARG00000116878 7922 2.388 - - 0.818 0.823 - - 0.747 - - alpha thalassemia/mental retardation syndrome X-linked homolog (human) [Source:ZFIN;Acc:ZDB-GENE-030912-11]
44. rimkla ENSDARG00000016830, ENSDARG00000112193 4111 2.384 - - 0.900 - - 0.743 0.741 - - ribosomal modification protein rimK-like family member A [Source:ZFIN;Acc:ZDB-GENE-040912-20]
45. hnrnpub ENSDARG00000004735 16496 2.383 0.790 - - - - - 0.860 0.733 - heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
46. hnrnpk ENSDARG00000018914 8841 2.382 - - 0.765 - - - 0.872 0.745 - heterogeneous nuclear ribonucleoprotein K [Source:ZFIN;Acc:ZDB-GENE-040426-1926]
47. rrm1 ENSDARG00000014017 7296 2.379 - - 0.722 0.790 - - 0.867 - - ribonucleotide reductase M1 polypeptide [Source:ZFIN;Acc:ZDB-GENE-990415-247]
48. rbm25 rbm25 3629 2.371 - - 0.878 - - 0.793 0.700 - -
49. hnrnpr ENSDARG00000014569 3423 2.37 - - 0.910 - - 0.727 0.733 - - heterogeneous nuclear ribonucleoprotein R [Source:ZFIN;Acc:ZDB-GENE-040426-2766]
50. smarce1 ENSDARG00000016871 9628 2.369 - - - - - 0.734 0.848 0.787 - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-967]
51. actr1 ENSDARG00000011611 3879 2.359 - 0.704 - - - 0.872 0.783 - - ARP1 actin related protein 1, centractin [Source:ZFIN;Acc:ZDB-GENE-040426-2695]
52. ccdc85ca ENSDARG00000005232 3218 2.358 - - 0.894 - - 0.702 0.762 - - coiled-coil domain containing 85C, a [Source:ZFIN;Acc:ZDB-GENE-060825-198]
53. ZFHX3 ENSDARG00000103057 7759 2.356 - - - - - 0.725 0.794 0.837 - zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
54. ANKRD11 ENSDARG00000051886 10024 2.352 - 0.728 - - - 0.851 0.773 - - ankyrin repeat domain 11 [Source:ZFIN;Acc:ZDB-GENE-030131-3932]
55. pou3f2a ENSDARG00000070220 817 2.337 - - - 0.737 - 0.814 - 0.786 - POU class 3 homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-980526-139]
56. zmiz1a ENSDARG00000074502 3920 2.336 - 0.749 - - - 0.826 0.761 - - zinc finger, MIZ-type containing 1a [Source:ZFIN;Acc:ZDB-GENE-080220-27]
57. sin3b ENSDARG00000062472 2025 2.332 - - - - - 0.769 0.770 0.793 - SIN3 transcription regulator family member B [Source:ZFIN;Acc:ZDB-GENE-030131-8264]
58. CABZ01111990.1 CABZ01111990.1 4374 2.329 - - - - - 0.824 0.715 0.790 -
59. DPY19L3 ENSDARG00000079013 821 2.329 - - - - - 0.818 0.765 0.746 - dpy-19 like C-mannosyltransferase 3 [Source:ZFIN;Acc:ZDB-GENE-100319-1]
60. h2afvb ENSDARG00000116491 35692 2.303 0.706 - - - - 0.738 - 0.859 - H2A histone family, member Vb [Source:ZFIN;Acc:ZDB-GENE-050506-24]
61. ier5 ENSDARG00000009881, ENSDARG00000111680 11432 2.302 - 0.771 - - - 0.814 0.717 - - immediate early response 5 [Source:ZFIN;Acc:ZDB-GENE-030616-127]
62. akirin2 ENSDARG00000058729 13245 2.299 - - - 0.722 - - 0.748 0.829 - akirin 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2944]
63. atp2b4 5891 2.298 - - 0.765 - - 0.776 0.757 - - ATPase, Ca++ transporting, plasma membrane 4
64. meaf6 ENSDARG00000101216 6865 2.298 - - - 0.783 - - 0.800 0.715 - MYST/Esa1-associated factor 6 [Source:ZFIN;Acc:ZDB-GENE-040808-12]
65. tia1 ENSDARG00000052536, ENSDARG00000114478 4392 2.293 - - - - - 0.716 0.714 0.863 - TIA1 cytotoxic granule-associated RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-1506]
66. midn ENSDARG00000018524 7559 2.288 - - - - - 0.738 0.752 0.798 - midnolin [Source:ZFIN;Acc:ZDB-GENE-030131-2433]
67. znf865 ENSDARG00000036698 15532 2.286 - - - 0.723 - 0.760 0.803 - - zinc finger protein 865 [Source:ZFIN;Acc:ZDB-GENE-060503-896]
68. jarid2b ENSDARG00000062268 2206 2.282 - - - 0.782 - 0.725 - 0.775 - jumonji, AT rich interactive domain 2b [Source:ZFIN;Acc:ZDB-GENE-060503-246]
69. fam219ab ENSDARG00000013813 591 2.28 - - - - - 0.763 0.740 0.777 - family with sequence similarity 219, member Ab [Source:ZFIN;Acc:ZDB-GENE-050522-213]
70. srsf4 ENSDARG00000105293 9657 2.279 0.705 - - - - 0.816 0.758 - - serine/arginine-rich splicing factor 4 [Source:ZFIN;Acc:ZDB-GENE-030131-591]
71. tubb4b ENSDARG00000002344 30333 2.278 0.765 - - - 0.703 - - 0.810 - tubulin, beta 4B class IVb [Source:ZFIN;Acc:ZDB-GENE-030131-8625]
72. foxk2 ENSDARG00000030583 2982 2.274 - - - - - 0.728 0.714 0.832 - forkhead box K2 [Source:ZFIN;Acc:ZDB-GENE-030131-2861]
73. asf1bb ENSDARG00000043713 2340 2.274 - - - 0.805 - - 0.736 0.733 - anti-silencing function 1Bb histone chaperone [Source:ZFIN;Acc:ZDB-GENE-040426-2594]
74. si:ch211-198a12.6 ENSDARG00000074624, ENSDARG00000114808 8911 2.271 - 0.750 - - - - 0.727 0.794 - si:ch211-198a12.6 [Source:ZFIN;Acc:ZDB-GENE-030131-1683]
75. vdac1 ENSDARG00000045132 8051 2.269 0.774 - - - - 0.777 0.718 - - voltage-dependent anion channel 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6514]
76. vldlr ENSDARG00000006257 772 2.266 - - - - 0.787 0.713 - 0.766 - very low density lipoprotein receptor [Source:ZFIN;Acc:ZDB-GENE-040426-803]
77. npm1b ENSDARG00000037675 5448 2.265 - - - 0.748 - - 0.795 0.722 - nucleophosmin 1b [Source:ZFIN;Acc:ZDB-GENE-080723-7]
78. UBE2QL1 ENSDARG00000079276 3474 2.265 0.717 - - - - 0.805 0.743 - - ubiquitin-conjugating enzyme E2Q family-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8137]
79. notch3 ENSDARG00000052139 15033 2.262 0.763 - - - - 0.764 - 0.735 - notch 3 [Source:ZFIN;Acc:ZDB-GENE-000329-5]
80. AL844567.1 AL844567.1 1605 2.253 - - - 0.712 - 0.827 - 0.714 -
81. scrt1a ENSDARG00000100821 2687 2.235 - - - 0.714 - 0.751 - 0.770 - scratch family zinc finger 1a [Source:ZFIN;Acc:ZDB-GENE-080219-30]
82. arid2 ENSDARG00000007413 4413 2.233 - - - 0.712 - - 0.810 - 0.711 AT rich interactive domain 2 (ARID, RFX-like) [Source:ZFIN;Acc:ZDB-GENE-030131-6311]
83. KLF16 KLF16 3773 2.229 - - - 0.733 - 0.778 - 0.718 -
84. grb2b ENSDARG00000038059 9050 2.225 - - - - 0.801 0.706 0.718 - - growth factor receptor-bound protein 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1975]
85. LEPROTL1 ENSDARG00000104871 3019 2.224 - - - - - 0.749 0.770 0.705 - leptin receptor overlapping transcript like 1 [Source:HGNC Symbol;Acc:HGNC:6555]
86. phactr4b ENSDARG00000032221 1389 2.204 - - - 0.774 - 0.706 0.724 - - phosphatase and actin regulator 4b [Source:ZFIN;Acc:ZDB-GENE-040426-1131]
87. lmnb1 ENSDARG00000044299 9817 2.204 - - 0.735 - - - 0.714 0.755 - lamin B1 [Source:ZFIN;Acc:ZDB-GENE-020424-2]
88. hoxb1b ENSDARG00000054033, ENSDARG00000112663 1967 2.195 0.778 - - - - 0.705 0.712 - - homeobox B1b [Source:ZFIN;Acc:ZDB-GENE-980526-290]
89. msl2a ENSDARG00000038909 1357 2.191 - - - - - 0.707 0.754 0.730 - male-specific lethal 2 homolog a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-070912-449]
90. api5 ENSDARG00000033597 6655 2.164 - - - - - 0.738 0.711 0.715 - apoptosis inhibitor 5 [Source:ZFIN;Acc:ZDB-GENE-030131-395]
91. zc3h18 ENSDARG00000062506 1676 1.853 - - 0.918 - - - - - 0.935 zinc finger CCCH-type containing 18 [Source:ZFIN;Acc:ZDB-GENE-050419-13]
92. rspo2 ENSDARG00000079570, ENSDARG00000113124 1688 1.845 - - 0.902 - - - - - 0.943 R-spondin 2 [Source:ZFIN;Acc:ZDB-GENE-060503-667]
93. C6H2orf40 C6H2orf40 4224 1.833 - - 0.885 - - - - - 0.948
94. mta2 ENSDARG00000013031 2932 1.808 - - - - - - 0.898 0.910 - metastasis associated 1 family, member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4803]
95. elof1 ENSDARG00000099453 6176 1.806 - - - - - - 0.842 - 0.964 ELF1 homolog, elongation factor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1385]
96. zgc:77262 ENSDARG00000044545 5563 1.771 - - - - - - 0.821 - 0.950 zgc:77262 [Source:ZFIN;Acc:ZDB-GENE-040426-1811]
97. ilf3b ENSDARG00000105177 9473 1.763 - - - - - - 0.863 0.900 - interleukin enhancer binding factor 3b [Source:ZFIN;Acc:ZDB-GENE-030131-587]
98. smo ENSDARG00000002952 6411 1.751 - - - - - - 0.804 - 0.947 smoothened, frizzled class receptor [Source:ZFIN;Acc:ZDB-GENE-980526-89]
99. mab21l1 ENSDARG00000102047 4665 1.747 - - - - - - - 0.824 0.923 mab-21-like 1 [Source:ZFIN;Acc:ZDB-GENE-020516-1]
100. hnrpl 6412 1.738 - - - - - 0.877 0.861 - - heterogeneous nuclear ribonucleoprotein L, transcript variant X1

There are 2002 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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