Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for ss18

Gene Name Gene ID Reads Annotation
ss18 ENSDARG00000002970 2618 synovial sarcoma translocation, chromosome 18 (H. sapiens) [Source:ZFIN;Acc:ZDB-GENE-030131-4867]










Genes with expression patterns similar to ss18

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ss18 ENSDARG00000002970 2618 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 synovial sarcoma translocation, chromosome 18 (H. sapiens) [Source:ZFIN;Acc:ZDB-GENE-030131-4867]
2. lbr ENSDARG00000014013 4835 2.428 - - 0.947 - 0.737 - 0.744 - - lamin B receptor [Source:ZFIN;Acc:ZDB-GENE-030804-11]
3. appbp2 ENSDARG00000007566 1961 2.423 - - 0.960 - - - 0.729 - 0.734 amyloid beta precursor protein (cytoplasmic tail) binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1715]
4. atad5a ENSDARG00000070568 1840 2.414 - - 0.977 0.725 - - 0.712 - - ATPase family, AAA domain containing 5a [Source:ZFIN;Acc:ZDB-GENE-070912-20]
5. pl10 pl10 10795 2.305 - 0.752 0.732 - - - 0.821 - -
6. h2afva ENSDARG00000068820 16427 2.3 - - - 0.748 - 0.843 0.709 - - H2A histone family, member Va [Source:ZFIN;Acc:ZDB-GENE-020717-1]
7. vcp ENSDARG00000020008, ENSDARG00000116074 2284 2.205 - - 0.706 - - 0.700 0.799 - - valosin containing protein [Source:ZFIN;Acc:ZDB-GENE-030131-5408]
8. CORO1C CORO1C 5554 1.886 - - 0.953 - - - - 0.933 -
9. pank1b ENSDARG00000010098 3202 1.879 - - 0.964 - - - - - 0.915 pantothenate kinase 1b [Source:ZFIN;Acc:ZDB-GENE-070209-259]
10. eif3ja ENSDARG00000012603 6324 1.842 - - 0.962 - - - - - 0.880 eukaryotic translation initiation factor 3, subunit Ja [Source:ZFIN;Acc:ZDB-GENE-040426-1266]
11. hmgcrb ENSDARG00000105206 2080 1.828 - - 0.954 - - - - - 0.874 3-hydroxy-3-methylglutaryl-CoA reductase b [Source:ZFIN;Acc:ZDB-GENE-051108-1]
12. id2a ENSDARG00000055283 7428 1.795 - - 0.900 - - - - 0.895 - inhibitor of DNA binding 2a [Source:ZFIN;Acc:ZDB-GENE-020910-1]
13. cbfa2t2 ENSDARG00000074337 4323 1.786 - - 0.970 - - - - - 0.816 core-binding factor, runt domain, alpha subunit 2; translocated to, 2 [Source:ZFIN;Acc:ZDB-GENE-070209-1]
14. pcnp ENSDARG00000037713 2754 1.771 - - 0.891 - - - - - 0.880 PEST proteolytic signal containing nuclear protein [Source:ZFIN;Acc:ZDB-GENE-041010-130]
15. PATZ1 ENSDARG00000076584 1116 1.759 - - 0.970 - - - 0.789 - - POZ (BTB) and AT hook containing zinc finger 1 [Source:ZFIN;Acc:ZDB-GENE-111223-4]
16. pou2f2a ENSDARG00000019658, ENSDARG00000036816 2027 1.752 - - 0.974 - - 0.778 - - - POU class 2 homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-060310-2]
17. BX682552.2 BX682552.2 1427 1.749 - - - - - - - 0.893 0.856
18. lgi1a ENSDARG00000020493 1218 1.747 - - 0.974 - - 0.773 - - - leucine-rich, glioma inactivated 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1731]
19. mettl3 ENSDARG00000012827 728 1.745 - - 0.966 - - 0.779 - - - methyltransferase like 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9498]
20. cpsf3 ENSDARG00000027649 6897 1.722 - - 0.857 - - - 0.865 - - cleavage and polyadenylation specific factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-3275]
21. nucks1b ENSDARG00000012777 4468 1.716 - 0.830 - - - - - - 0.886 nuclear casein kinase and cyclin-dependent kinase substrate 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4544]
22. CR548630.1 CR548630.1 3301 1.716 - - 0.963 - - 0.753 - - -
23. rnf20 ENSDARG00000016664 3641 1.714 - - 0.956 - - 0.758 - - - ring finger protein 20, E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-130404-2]
24. lsm6 ENSDARG00000036995 4377 1.713 - - 0.879 - - - - - 0.834 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:ZFIN;Acc:ZDB-GENE-040625-50]
25. cd99l2 ENSDARG00000056722 5036 1.711 - 0.825 0.886 - - - - - - CD99 molecule-like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1986]
26. samm50l ENSDARG00000039681 2465 1.711 - - 0.952 - - - 0.759 - - sorting and assembly machinery component 50 homolog, like [Source:ZFIN;Acc:ZDB-GENE-041114-30]
27. lrp12 ENSDARG00000098845 999 1.708 - - 0.965 - - - - - 0.743 low density lipoprotein receptor-related protein 12 [Source:ZFIN;Acc:ZDB-GENE-060503-399]
28. ptbp2a ENSDARG00000101947 1921 1.707 - - - 0.796 - - - - 0.911 polypyrimidine tract binding protein 2a [Source:ZFIN;Acc:ZDB-GENE-050320-141]
29. dgcr2 ENSDARG00000042962, ENSDARG00000109230 2339 1.704 - - - - - - 0.831 - 0.873 DiGeorge syndrome critical region gene 2 [Source:ZFIN;Acc:ZDB-GENE-040718-404]
30. polr2j ENSDARG00000035146 1493 1.699 - - - - - - 0.798 - 0.901 polymerase (RNA) II (DNA directed) polypeptide J [Source:ZFIN;Acc:ZDB-GENE-050522-120]
31. ptpn9a ENSDARG00000077495 2295 1.699 - - 0.960 - - - 0.739 - - protein tyrosine phosphatase, non-receptor type 9, a [Source:ZFIN;Acc:ZDB-GENE-101027-1]
32. phc2b_1 ENSDARG00000013224 1316 1.697 - - 0.974 - - - - 0.723 - polyhomeotic homolog 2b (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-1113]
33. kif11 ENSDARG00000010948 4973 1.695 - - - - - 0.757 - 0.938 - kinesin family member 11 [Source:ZFIN;Acc:ZDB-GENE-020426-1]
34. si:dkey-176f19.6 si:dkey-176f19.6 373 1.693 - 0.729 0.964 - - - - - -
35. tomm70a ENSDARG00000029639, ENSDARG00000112054 7715 1.693 - - 0.903 - - - - - 0.790 translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-8173]
36. crebbpa ENSDARG00000104609 1739 1.693 - - 0.914 - - - 0.779 - - CREB binding protein a [Source:ZFIN;Acc:ZDB-GENE-050208-439]
37. nova1 ENSDARG00000020178 4129 1.686 - - 0.818 - - - - - 0.868 neuro-oncological ventral antigen 1 [Source:ZFIN;Acc:ZDB-GENE-060526-113]
38. lmbr1 ENSDARG00000024092, ENSDARG00000116241 1418 1.68 - 0.715 0.965 - - - - - - limb development membrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-090128-4]
39. ATF6B 960 1.673 - - - - - - 0.802 - 0.871 activating transcription factor 6 beta
40. hnrpkl ENSDARG00000007034 4660 1.673 - 0.731 0.942 - - - - - - heterogeneous nuclear ribonucleoprotein K, like [Source:ZFIN;Acc:ZDB-GENE-040426-1923]
41. ncapg ENSDARG00000070109, ENSDARG00000109474, ENSDARG00000113314, ENSDARG00000113623 2338 1.672 - - - - - - 0.736 0.936 - non-SMC condensin I complex, subunit G [Source:ZFIN;Acc:ZDB-GENE-041111-282]
42. taf13 ENSDARG00000070834, ENSDARG00000109314 1982 1.665 - - - - - - 0.783 - 0.882 TATA-box binding protein associated factor 13 [Source:ZFIN;Acc:ZDB-GENE-030131-2873]
43. carm1 ENSDARG00000018698 5599 1.664 - 0.755 - - - - - 0.909 - coactivator-associated arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040724-77]
44. pdap1a ENSDARG00000092546, ENSDARG00000116115 7617 1.661 - - 0.844 - - - 0.817 - - pdgfa associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1693]
45. rqcd1 2301 1.659 - - - - - - 0.753 - 0.906 RCD1 required for cell differentiation1 homolog (S. pombe)
46. dek ENSDARG00000070108 2262 1.658 - 0.741 0.917 - - - - - - DEK proto-oncogene [Source:ZFIN;Acc:ZDB-GENE-060512-191]
47. zcchc10 ENSDARG00000091092 1333 1.657 - 0.864 - - - - 0.793 - - zinc finger, CCHC domain containing 10 [Source:ZFIN;Acc:ZDB-GENE-030131-6172]
48. LIG1 ENSDARG00000060041, ENSDARG00000110159, ENSDARG00000113788 8110 1.652 - - - - - 0.741 - 0.911 - ligase I, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-110404-2]
49. map3k7 ENSDARG00000020469 2845 1.644 - - - - - - 0.731 - 0.913 mitogen-activated protein kinase kinase kinase 7 [Source:ZFIN;Acc:ZDB-GENE-041001-135]
50. fam101b 398 1.639 - 0.870 - - - - - - 0.769 family with sequence similarity 101, member B
51. rhebl1 ENSDARG00000039162 3966 1.628 - 0.734 - - - - - - 0.894 Ras homolog, mTORC1 binding like 1 [Source:ZFIN;Acc:ZDB-GENE-000510-1]
52. nop10 ENSDARG00000104227 2463 1.626 - - 0.891 - - - 0.735 - - NOP10 ribonucleoprotein homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-041007-4]
53. plekhh1 ENSDARG00000053835 2123 1.625 - 0.779 - - - - - - 0.846 pleckstrin homology domain containing, family H (with MyTH4 domain) member 1 [Source:ZFIN;Acc:ZDB-GENE-061219-1]
54. lsm14ab ENSDARG00000100553 3837 1.623 - - - - - 0.848 - - 0.775 LSM14A mRNA processing body assembly factor b [Source:ZFIN;Acc:ZDB-GENE-040426-2462]
55. TMEM218 ENSDARG00000027129 716 1.622 - - - - - 0.730 - - 0.892 transmembrane protein 218 [Source:ZFIN;Acc:ZDB-GENE-040426-1232]
56. dpysl5b ENSDARG00000059311 600 1.617 - - - - - 0.742 - - 0.875 dihydropyrimidinase-like 5b [Source:ZFIN;Acc:ZDB-GENE-050720-4]
57. gipc1 ENSDARG00000104483 2913 1.616 - - - - - - - 0.712 0.904 GIPC PDZ domain containing family, member 1 [Source:ZFIN;Acc:ZDB-GENE-060726-1]
58. brd3a ENSDARG00000006527 1636 1.615 - - - - - 0.761 0.854 - - bromodomain containing 3a [Source:ZFIN;Acc:ZDB-GENE-030131-6141]
59. xpot ENSDARG00000099652 3026 1.612 - - - - - - 0.721 - 0.891 exportin, tRNA (nuclear export receptor for tRNAs) [Source:ZFIN;Acc:ZDB-GENE-041210-4]
60. gstm gstm 4064 1.608 - - 0.889 - - - 0.719 - -
61. elk3 ENSDARG00000018688, ENSDARG00000110853 1108 1.603 - 0.740 - - - - - - 0.863 ELK3, ETS-domain protein [Source:ZFIN;Acc:ZDB-GENE-030716-2]
62. kifc1 ENSDARG00000001558 6658 1.603 - - 0.897 0.706 - - - - - kinesin family member C1 [Source:ZFIN;Acc:ZDB-GENE-000208-21]
63. tead3a ENSDARG00000074321 2240 1.599 - - - - - - 0.789 - 0.810 TEA domain family member 3 a [Source:ZFIN;Acc:ZDB-GENE-031112-10]
64. TRAPPC10 ENSDARG00000098118 954 1.599 - - - - - - 0.737 - 0.862 trafficking protein particle complex 10 [Source:ZFIN;Acc:ZDB-GENE-131115-1]
65. HOMEZ HOMEZ 1824 1.597 - - - 0.778 - - 0.819 - -
66. anxa2a ENSDARG00000003216 10684 1.594 - 0.778 0.816 - - - - - - annexin A2a [Source:ZFIN;Acc:ZDB-GENE-030131-4282]
67. tufm ENSDARG00000104173 9292 1.594 - - 0.827 - - - - - 0.767 Tu translation elongation factor, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-050320-73]
68. npm1b ENSDARG00000037675 5448 1.594 - - 0.877 0.717 - - - - - nucleophosmin 1b [Source:ZFIN;Acc:ZDB-GENE-080723-7]
69. HNRNPAB HNRNPAB 22267 1.593 - - - - - - 0.777 0.816 -
70. luc7l3 ENSDARG00000014366 4416 1.593 - 0.711 - - - - 0.882 - - LUC7-like 3 pre-mRNA splicing factor [Source:ZFIN;Acc:ZDB-GENE-060616-375]
71. zc3h13 ENSDARG00000037177, ENSDARG00000113331 2662 1.591 - - - 0.767 - - 0.824 - - zinc finger CCCH-type containing 13 [Source:ZFIN;Acc:ZDB-GENE-040426-1619]
72. TNKS TNKS 2775 1.589 - 0.785 - - - - 0.804 - -
73. gfer ENSDARG00000070061 1119 1.589 - - 0.886 - - - 0.703 - - growth factor, augmenter of liver regeneration (ERV1 homolog, S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060810-186]
74. trrap ENSDARG00000100623 3429 1.588 - - - 0.806 - - 0.782 - - transformation/transcription domain-associated protein [Source:ZFIN;Acc:ZDB-GENE-050809-47]
75. gins1 ENSDARG00000007624 1421 1.584 - - - - - - 0.721 - 0.863 GINS complex subunit 1 (Psf1 homolog) [Source:ZFIN;Acc:ZDB-GENE-041010-184]
76. tpx2 ENSDARG00000078654 8120 1.576 - - 0.818 - - - - - 0.758 TPX2, microtubule-associated, homolog (Xenopus laevis) [Source:ZFIN;Acc:ZDB-GENE-030131-9652]
77. aacs ENSDARG00000012468 1138 1.574 - - - - - 0.727 - - 0.847 acetoacetyl-CoA synthetase [Source:ZFIN;Acc:ZDB-GENE-040426-903]
78. tshz1 ENSDARG00000005026 1948 1.562 0.826 - - - - 0.736 - - - teashirt zinc finger homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-030820-3]
79. nsd1a ENSDARG00000060016 2974 1.56 - - - - - 0.738 0.822 - - nuclear receptor binding SET domain protein 1a [Source:ZFIN;Acc:ZDB-GENE-080519-3]
80. nipblb ENSDARG00000061052 6109 1.559 - 0.831 - - - - 0.728 - - nipped-B homolog b (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-6070]
81. sp3b ENSDARG00000007812 2928 1.556 - 0.846 - - - 0.710 - - - Sp3b transcription factor [Source:ZFIN;Acc:ZDB-GENE-110815-3]
82. ier5 ENSDARG00000009881, ENSDARG00000111680 11432 1.556 - - - - - - 0.737 - 0.819 immediate early response 5 [Source:ZFIN;Acc:ZDB-GENE-030616-127]
83. myeov2 3351 1.554 - - - - - - 0.705 - 0.849 myeloma overexpressed 2
84. psma2 ENSDARG00000040121 2504 1.55 - - - - - - 0.847 0.703 - proteasome subunit alpha 2 [Source:ZFIN;Acc:ZDB-GENE-050522-479]
85. brd3b ENSDARG00000100129 6387 1.55 - - - - - - 0.723 - 0.827 bromodomain containing 3b [Source:ZFIN;Acc:ZDB-GENE-030131-5316]
86. BX511121.1 ENSDARG00000029997 1774 1.545 - - - - - 0.761 - - 0.784
87. ppp2r1a ppp2r1a 11291 1.543 - - - - - - 0.739 0.804 -
88. chd4a ENSDARG00000063535, ENSDARG00000111791 4059 1.54 - - - 0.720 - - - - 0.820 chromodomain helicase DNA binding protein 4a [Source:ZFIN;Acc:ZDB-GENE-041111-187]
89. pfdn2 ENSDARG00000025391, ENSDARG00000110096 3176 1.54 - 0.725 - - - - - - 0.815 prefoldin subunit 2 [Source:ZFIN;Acc:ZDB-GENE-060519-27]
90. whsc1l1 8544 1.538 - - - - - 0.726 0.812 - - Wolf-Hirschhorn syndrome candidate 1-like 1, transcript variant X2
91. pias4a ENSDARG00000007081 4264 1.534 - - - - - 0.762 0.772 - - protein inhibitor of activated STAT, 4a [Source:ZFIN;Acc:ZDB-GENE-040426-2734]
92. fam102bb ENSDARG00000002333 1483 1.534 - 0.773 - - - - 0.761 - - family with sequence similarity 102, member B, b [Source:ZFIN;Acc:ZDB-GENE-041014-330]
93. ogt.1 ENSDARG00000099455, ENSDARG00000105243 3274 1.532 - - - 0.730 - - 0.802 - - O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9631]
94. nlk1 ENSDARG00000006566 1123 1.531 - - - - - 0.831 - 0.700 - nemo-like kinase, type 1 [Source:ZFIN;Acc:ZDB-GENE-040701-1]
95. prps1b ENSDARG00000037506, ENSDARG00000110507 4170 1.53 - - - - - - 0.822 0.708 - phosphoribosyl pyrophosphate synthetase 1B [Source:ZFIN;Acc:ZDB-GENE-030131-4011]
96. CYHR1 ENSDARG00000061057 2625 1.528 - 0.725 - - - - 0.803 - - cysteine/histidine-rich 1 [Source:ZFIN;Acc:ZDB-GENE-060929-720]
97. gpx7 ENSDARG00000091511 3045 1.521 - 0.732 - - - - 0.789 - - glutathione peroxidase 7 [Source:ZFIN;Acc:ZDB-GENE-050522-419]
98. srrm1 ENSDARG00000001244 4972 1.519 - 0.723 - 0.796 - - - - - serine/arginine repetitive matrix 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2789]
99. CR354611.2 CR354611.2 2040 1.516 - - - - - - 0.739 - 0.777
100. stk16 ENSDARG00000037777 255 1.515 - 0.807 - - - 0.708 - - - serine/threonine kinase 16 [Source:ZFIN;Acc:ZDB-GENE-050417-102]

There are 1504 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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