Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for srrt

Gene Name Gene ID Reads Annotation
srrt ENSDARG00000017762, ENSDARG00000114824 2158 serrate RNA effector molecule homolog (Arabidopsis) [Source:ZFIN;Acc:ZDB-GENE-020419-13]










Genes with expression patterns similar to srrt

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. srrt ENSDARG00000017762, ENSDARG00000114824 2158 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 serrate RNA effector molecule homolog (Arabidopsis) [Source:ZFIN;Acc:ZDB-GENE-020419-13]
2. wdr5 ENSDARG00000016903 4834 2.948 - - 0.795 0.722 0.702 - - - 0.729 WD repeat domain 5 [Source:ZFIN;Acc:ZDB-GENE-040426-2082]
3. brd1b ENSDARG00000051798 1712 2.344 - 0.763 - - - - 0.758 - 0.823 bromodomain containing 1b [Source:ZFIN;Acc:ZDB-GENE-070209-98]
4. LIMD2 ENSDARG00000078092 3414 2.276 - 0.815 - - - - 0.710 0.751 - LIM domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-120906-1]
5. fam60al 2846 2.227 - - 0.770 - 0.734 - - - 0.723 family with sequence similarity 60, member A, like
6. txlna ENSDARG00000077037 2614 1.695 - 0.812 - - - - 0.883 - - taxilin alpha [Source:ZFIN;Acc:ZDB-GENE-030131-2900]
7. psmd4b ENSDARG00000023279 2002 1.634 - 0.802 - - - - - 0.832 - proteasome 26S subunit, non-ATPase 4b [Source:ZFIN;Acc:ZDB-GENE-050417-96]
8. atxn2l ENSDARG00000011597, ENSDARG00000112336 2104 1.632 - 0.770 - - - - 0.862 - - ataxin 2-like [Source:ZFIN;Acc:ZDB-GENE-030131-3246]
9. sarnp ENSDARG00000059357 4768 1.621 - 0.763 - - - - 0.858 - - SAP domain containing ribonucleoprotein [Source:ZFIN;Acc:ZDB-GENE-050522-161]
10. adnpa ENSDARG00000062002, ENSDARG00000115617 2009 1.605 - - 0.759 - - - - - 0.846 activity-dependent neuroprotector homeobox a [Source:ZFIN;Acc:ZDB-GENE-061215-112]
11. hmmr ENSDARG00000021794, ENSDARG00000111088 2009 1.593 - - - - - 0.823 0.770 - - hyaluronan-mediated motility receptor (RHAMM) [Source:ZFIN;Acc:ZDB-GENE-030131-731]
12. serinc1 ENSDARG00000009106 10571 1.591 - 0.834 - - - - - - 0.757 serine incorporator 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4415]
13. smc1al ENSDARG00000058203 8838 1.59 - 0.766 - - - - - - 0.824 structural maintenance of chromosomes 1A, like [Source:ZFIN;Acc:ZDB-GENE-040426-57]
14. ogt.1 ENSDARG00000099455, ENSDARG00000105243 3274 1.583 - 0.767 - - - - 0.816 - - O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9631]
15. mcm2 ENSDARG00000102798 8148 1.579 - - - - - - 0.751 - 0.828 minichromosome maintenance complex component 2 [Source:ZFIN;Acc:ZDB-GENE-020419-24]
16. zgc:110540 ENSDARG00000054929 2154 1.578 - - - - - - 0.861 - 0.717 zgc:110540 [Source:ZFIN;Acc:ZDB-GENE-050327-77]
17. rxrbb ENSDARG00000002006, ENSDARG00000117079 1975 1.573 - 0.800 - - - - 0.773 - - retinoid x receptor, beta b [Source:ZFIN;Acc:ZDB-GENE-990415-242]
18. psmd11a ENSDARG00000060150 4529 1.572 - - - - - - 0.869 - 0.703 proteasome 26S subunit, non-ATPase 11a [Source:ZFIN;Acc:ZDB-GENE-030131-2711]
19. eif2s1a ENSDARG00000005827 5992 1.571 - - - - 0.731 - - - 0.840 eukaryotic translation initiation factor 2, subunit 1 alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-526]
20. prp19 prp19 4804 1.559 - - 0.701 - - - 0.858 - -
21. sf1 ENSDARG00000008188 5142 1.554 - - - - - - 0.816 - 0.738 splicing factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2492]
22. cdk2ap2 ENSDARG00000103145 8024 1.553 - - - - - - 0.788 - 0.765 cyclin-dependent kinase 2 associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-040718-35]
23. arid1aa ENSDARG00000101710 3644 1.548 - 0.774 - - - - - - 0.774 AT rich interactive domain 1Aa (SWI-like) [Source:ZFIN;Acc:ZDB-GENE-080220-35]
24. sin3b ENSDARG00000062472 2025 1.547 - - - - - - 0.711 - 0.836 SIN3 transcription regulator family member B [Source:ZFIN;Acc:ZDB-GENE-030131-8264]
25. smarcc1b ENSDARG00000098919 770 1.546 - - - - - - 0.783 - 0.763 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1b [Source:ZFIN;Acc:ZDB-GENE-060503-273]
26. ldb1a ENSDARG00000010137 3035 1.545 - 0.731 - - - - - - 0.814 LIM domain binding 1a [Source:ZFIN;Acc:ZDB-GENE-990415-138]
27. WAPAL WAPAL 1888 1.544 - 0.787 - - - - - - 0.757
28. sf3a1 ENSDARG00000041887 6702 1.541 - - - - - - 0.787 - 0.754 splicing factor 3a, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030616-156]
29. lrrn1 ENSDARG00000060115, ENSDARG00000115960 5175 1.541 - 0.718 - - - - - - 0.823 leucine rich repeat neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-071126-1]
30. yaf2 ENSDARG00000015966 1905 1.54 - - - - - - 0.818 - 0.722 YY1 associated factor 2 [Source:ZFIN;Acc:ZDB-GENE-041210-115]
31. pou3f1 ENSDARG00000009823, ENSDARG00000112302 7037 1.539 - - 0.741 - - - - - 0.798 POU class 3 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-372]
32. map3k7 ENSDARG00000020469 2845 1.539 - 0.747 - - - - 0.792 - - mitogen-activated protein kinase kinase kinase 7 [Source:ZFIN;Acc:ZDB-GENE-041001-135]
33. C8H1orf106 C8H1orf106 2690 1.536 - - 0.835 - - - - - 0.701
34. TRAK2 ENSDARG00000102471 2258 1.533 - 0.768 - - - - - - 0.765 trafficking protein, kinesin binding 2 [Source:ZFIN;Acc:ZDB-GENE-030131-7496]
35. rqcd1 2301 1.531 - 0.758 - - - - 0.773 - - RCD1 required for cell differentiation1 homolog (S. pombe)
36. whsc1 1701 1.529 - - - - - - 0.823 - 0.706 Wolf-Hirschhorn syndrome candidate 1
37. usp5 ENSDARG00000014517, ENSDARG00000114598 1969 1.528 - 0.724 - - - 0.804 - - - ubiquitin specific peptidase 5 (isopeptidase T) [Source:ZFIN;Acc:ZDB-GENE-040426-2584]
38. rbpjb ENSDARG00000052091 3122 1.527 - - 0.741 - - - - - 0.786 recombination signal binding protein for immunoglobulin kappa J region b [Source:ZFIN;Acc:ZDB-GENE-070319-1]
39. nckap1 ENSDARG00000060853 3540 1.525 - - 0.773 - - - 0.752 - - NCK-associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4426]
40. polr2k ENSDARG00000075616 2047 1.524 - - - - - 0.797 0.727 - - polymerase (RNA) II (DNA directed) polypeptide K [Source:ZFIN;Acc:ZDB-GENE-070820-18]
41. hmgb2b ENSDARG00000053990 11519 1.522 - - - - - - 0.704 - 0.818 high mobility group box 2b [Source:ZFIN;Acc:ZDB-GENE-040912-122]
42. psmb7 ENSDARG00000037962 11542 1.52 - 0.772 - - - - - - 0.748 proteasome subunit beta 7 [Source:ZFIN;Acc:ZDB-GENE-001208-4]
43. pcdh10a ENSDARG00000099729 2214 1.519 - 0.766 - - - - - - 0.753 protocadherin 10a [Source:ZFIN;Acc:ZDB-GENE-020731-1]
44. smarca5 ENSDARG00000052348 15433 1.518 - - - - - - 0.710 - 0.808 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 [Source:ZFIN;Acc:ZDB-GENE-021125-1]
45. ube2g2 ENSDARG00000025404 1774 1.515 - 0.728 - - - - 0.787 - - ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-050417-288]
46. zfyve27 ENSDARG00000059835 604 1.513 - 0.713 - - - - 0.800 - - zinc finger, FYVE domain containing 27 [Source:ZFIN;Acc:ZDB-GENE-061013-502]
47. gpsm2 ENSDARG00000017311, ENSDARG00000113810 1001 1.513 - 0.771 - - - - 0.742 - - G protein signaling modulator 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1169]
48. srsf7a ENSDARG00000035325, ENSDARG00000110705 11788 1.512 - - 0.710 - - - - - 0.802 serine/arginine-rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798]
49. clic1 ENSDARG00000103340 2235 1.51 - 0.796 - - - - 0.714 - - chloride intracellular channel 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3202]
50. cpsf2 ENSDARG00000028971 841 1.51 - - - - - - - 0.763 0.747 cleavage and polyadenylation specific factor 2 [Source:ZFIN;Acc:ZDB-GENE-040718-79]
51. arhgap11a ENSDARG00000100019 1642 1.507 - 0.757 - - - - - - 0.750 Rho GTPase activating protein 11A [Source:ZFIN;Acc:ZDB-GENE-040426-2562]
52. CHMP4B CHMP4B 1387 1.502 - 0.771 - - - 0.731 - - -
53. tmed7 ENSDARG00000046022 2435 1.501 - 0.721 - - - - 0.780 - - transmembrane p24 trafficking protein 7 [Source:ZFIN;Acc:ZDB-GENE-040426-2570]
54. CU571336.2 CU571336.2 2690 1.501 - - - - - - 0.709 - 0.792
55. phf16 phf16 1116 1.5 - - 0.772 - - - 0.728 - -
56. hug 4100 1.5 - - - 0.745 - - - 0.755 - HuG, transcript variant X2
57. tet3 ENSDARG00000062646 6672 1.499 - 0.746 - - - - 0.753 - - tet methylcytosine dioxygenase 3 [Source:ZFIN;Acc:ZDB-GENE-060526-109]
58. CCNJL ENSDARG00000077116 1197 1.498 - - - - - - 0.750 - 0.748 cyclin J-like [Source:ZFIN;Acc:ZDB-GENE-030131-9888]
59. crebbpa ENSDARG00000104609 1739 1.498 - 0.719 - - - - 0.779 - - CREB binding protein a [Source:ZFIN;Acc:ZDB-GENE-050208-439]
60. chrac1 ENSDARG00000042337 2590 1.498 - - - - - - 0.770 0.728 - chromatin accessibility complex 1 [Source:ZFIN;Acc:ZDB-GENE-050227-18]
61. mycn ENSDARG00000006837 1616 1.496 - - - - 0.709 - - - 0.787 MYCN proto-oncogene, bHLH transcription factor [Source:ZFIN;Acc:ZDB-GENE-020711-1]
62. taf5 ENSDARG00000018325 1363 1.496 - - - 0.721 - - 0.775 - - TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-051120-180]
63. pitpnaa ENSDARG00000039490 1096 1.494 - 0.750 - - - - 0.744 - - phosphatidylinositol transfer protein, alpha a [Source:ZFIN;Acc:ZDB-GENE-040426-744]
64. SNRPG ENSDARG00000099667 18697 1.493 - - - - - - 0.708 - 0.785 small nuclear ribonucleoprotein polypeptide G [Source:ZFIN;Acc:ZDB-GENE-040912-105]
65. USO1 ENSDARG00000019581 1617 1.489 - - - - - - 0.743 0.746 - USO1 vesicle transport factor [Source:ZFIN;Acc:ZDB-GENE-040426-688]
66. uchl5 ENSDARG00000103404, ENSDARG00000110434 4029 1.487 - 0.742 - - - - 0.745 - - ubiquitin carboxyl-terminal hydrolase L5 [Source:ZFIN;Acc:ZDB-GENE-040426-2051]
67. tnrc6b ENSDARG00000074161 4597 1.487 - - - - - - 0.717 - 0.770 trinucleotide repeat containing 6b [Source:ZFIN;Acc:ZDB-GENE-030131-13]
68. kansl1a ENSDARG00000090895 2593 1.485 - - - - - - 0.752 - 0.733 KAT8 regulatory NSL complex subunit 1a [Source:ZFIN;Acc:ZDB-GENE-121219-5]
69. lbr ENSDARG00000014013 4835 1.484 - - - - 0.708 - - - 0.776 lamin B receptor [Source:ZFIN;Acc:ZDB-GENE-030804-11]
70. FRMD4A ENSDARG00000042249 2883 1.483 - 0.754 - - - - 0.729 - - FERM domain containing 4A [Source:HGNC Symbol;Acc:HGNC:25491]
71. rbb4 rbb4 15541 1.48 - - - - - - 0.714 - 0.766
72. rrm1 ENSDARG00000014017 7296 1.475 - - - - - - 0.741 - 0.734 ribonucleotide reductase M1 polypeptide [Source:ZFIN;Acc:ZDB-GENE-990415-247]
73. nfe2l1b ENSDARG00000076533, ENSDARG00000114820 1574 1.475 - - - - - 0.710 0.765 - - nuclear factor, erythroid 2-like 1b [Source:ZFIN;Acc:ZDB-GENE-120319-2]
74. HIPK1_1 HIPK1_1 8096 1.474 - - - - - - 0.716 - 0.758
75. dpf2l ENSDARG00000037291, ENSDARG00000112198 2353 1.47 - - - 0.706 - - - - 0.764 D4, zinc and double PHD fingers family 2, like [Source:ZFIN;Acc:ZDB-GENE-030131-5132]
76. znf827 ENSDARG00000076171 6304 1.469 - - 0.715 - - - - - 0.754 zinc finger protein 827 [Source:ZFIN;Acc:ZDB-GENE-080728-3]
77. cdk5 ENSDARG00000056683 1998 1.468 - - - - - - 0.709 - 0.759 cyclin-dependent kinase 5 [Source:ZFIN;Acc:ZDB-GENE-010131-2]
78. exoc3 ENSDARG00000014582, ENSDARG00000114378, ENSDARG00000117037 1155 1.466 - 0.736 - - - 0.730 - - - exocyst complex component 3 [Source:ZFIN;Acc:ZDB-GENE-030131-5947]
79. ncor1 ENSDARG00000035285, ENSDARG00000113129 4234 1.465 - 0.743 - - - - 0.722 - - nuclear receptor corepressor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-993]
80. xpo1a ENSDARG00000078041 3544 1.464 - - - 0.728 - - 0.736 - - exportin 1 (CRM1 homolog, yeast) a [Source:ZFIN;Acc:ZDB-GENE-050309-201]
81. TSSC4 ENSDARG00000036144 1994 1.464 - 0.703 - - - - 0.761 - - tumor suppressing subtransferable candidate 4 [Source:ZFIN;Acc:ZDB-GENE-060825-263]
82. luc7l3 ENSDARG00000014366 4416 1.461 - - - - - - 0.728 - 0.733 LUC7-like 3 pre-mRNA splicing factor [Source:ZFIN;Acc:ZDB-GENE-060616-375]
83. smu1 smu1 982 1.459 - - - - - - 0.723 0.736 -
84. ncapd2 ENSDARG00000005058 2819 1.455 - - - - 0.742 - - - 0.713 non-SMC condensin I complex, subunit D2 [Source:ZFIN;Acc:ZDB-GENE-050506-59]
85. h1fx ENSDARG00000054058 4075 1.453 - 0.735 - - - - - - 0.718 H1 histone family, member X [Source:ZFIN;Acc:ZDB-GENE-030131-1228]
86. BOLA3 ENSDARG00000098130 1340 1.452 - 0.733 - - - - 0.719 - - bolA family member 3 [Source:ZFIN;Acc:ZDB-GENE-040801-32]
87. SENP1 SENP1 1122 1.452 - - 0.728 - - - - - 0.724
88. elof1 ENSDARG00000099453 6176 1.452 - 0.732 - - - 0.720 - - - ELF1 homolog, elongation factor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1385]
89. si:dkeyp-113d7.10 ENSDARG00000092359 1585 1.451 - - - 0.713 - - - - 0.738 si:dkeyp-113d7.10 [Source:ZFIN;Acc:ZDB-GENE-061207-80]
90. hmp19 2554 1.449 - - 0.732 - - - - - 0.717 HMP19 protein
91. prpf38a ENSDARG00000039213, ENSDARG00000116046 1537 1.446 - - - - - - - 0.703 0.743 pre-mRNA processing factor 38A [Source:ZFIN;Acc:ZDB-GENE-040801-225]
92. nasp ENSDARG00000039208, ENSDARG00000114134 873 1.445 - - - - - - 0.708 - 0.737 nuclear autoantigenic sperm protein (histone-binding) [Source:ZFIN;Acc:ZDB-GENE-030131-5511]
93. atad5a ENSDARG00000070568 1840 1.44 - - - - - - 0.702 - 0.738 ATPase family, AAA domain containing 5a [Source:ZFIN;Acc:ZDB-GENE-070912-20]
94. hmgn3 ENSDARG00000036754, ENSDARG00000116728 11573 1.44 - - - - - - 0.737 - 0.703 high mobility group nucleosomal binding domain 3 [Source:ZFIN;Acc:ZDB-GENE-041114-180]
95. POLDIP3 ENSDARG00000099375 832 1.436 - 0.713 - - - - 0.723 - - polymerase (DNA-directed), delta interacting protein 3 [Source:ZFIN;Acc:ZDB-GENE-120201-2]
96. ppp1r10 ENSDARG00000032651 1465 1.435 - - - - - - 0.704 - 0.731 protein phosphatase 1, regulatory subunit 10 [Source:ZFIN;Acc:ZDB-GENE-020419-15]
97. rhoaa ENSDARG00000026845 6900 1.429 - - 0.700 - - - - - 0.729 ras homolog gene family, member Aa [Source:ZFIN;Acc:ZDB-GENE-040426-2150]
98. C3H19orf43 C3H19orf43 2961 1.427 - - - - - 0.717 0.710 - -
99. psmb6 ENSDARG00000002240 8015 1.426 0.701 - - - - - - - 0.725 proteasome subunit beta 6 [Source:ZFIN;Acc:ZDB-GENE-990415-216]
100. zgc:113442 ENSDARG00000101906 3092 1.426 - 0.705 - - - - 0.721 - - zgc:113442 [Source:ZFIN;Acc:ZDB-GENE-050227-2]

There are 1133 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA