Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for srrm1

Gene Name Gene ID Reads Annotation
srrm1 ENSDARG00000001244 4972 serine/arginine repetitive matrix 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2789]










Genes with expression patterns similar to srrm1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. srrm1 ENSDARG00000001244 4972 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 serine/arginine repetitive matrix 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2789]
2. nipblb ENSDARG00000061052 6109 3.24 - 0.845 - - - 0.769 0.825 0.801 - nipped-B homolog b (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-6070]
3. tgif1 ENSDARG00000059337 4020 3.176 - 0.854 0.745 - - - 0.722 0.855 - TGFB-induced factor homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-030131-475]
4. pou2f1b ENSDARG00000007996 2172 3.117 - - 0.716 - 0.843 0.809 0.749 - - POU class 2 homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2422]
5. ANKRD11 ENSDARG00000051886 10024 3.104 - 0.820 0.798 - - 0.737 0.749 - - ankyrin repeat domain 11 [Source:ZFIN;Acc:ZDB-GENE-030131-3932]
6. si:ch73-46j18.5 ENSDARG00000092467 6002 3.06 - 0.797 0.783 - 0.712 - 0.768 - - si:ch73-46j18.5 [Source:ZFIN;Acc:ZDB-GENE-030131-7892]
7. h2afva ENSDARG00000068820 16427 3.053 - - - 0.710 0.762 0.778 0.803 - - H2A histone family, member Va [Source:ZFIN;Acc:ZDB-GENE-020717-1]
8. zgc:174906 ENSDARG00000075314 2187 3.052 - - 0.713 - 0.748 - - 0.819 0.772 zgc:174906 [Source:ZFIN;Acc:ZDB-GENE-030131-6125]
9. mbd3a ENSDARG00000061774 4047 2.475 - 0.852 - - 0.807 0.816 - - - methyl-CpG binding domain protein 3a [Source:ZFIN;Acc:ZDB-GENE-030131-9077]
10. ppm1g ENSDARG00000075559 6516 2.453 - 0.780 - - 0.821 - - - 0.852 protein phosphatase, Mg2+/Mn2+ dependent, 1G [Source:ZFIN;Acc:ZDB-GENE-030425-4]
11. nup188 ENSDARG00000030022 2398 2.44 - 0.861 - - - 0.711 0.868 - - nucleoporin 188 [Source:ZFIN;Acc:ZDB-GENE-030131-7184]
12. kifc1 ENSDARG00000001558 6658 2.43 - - - - 0.933 0.740 0.757 - - kinesin family member C1 [Source:ZFIN;Acc:ZDB-GENE-000208-21]
13. dctn3 ENSDARG00000041363 3351 2.427 - 0.773 - - - - 0.850 0.804 - dynactin 3 (p22) [Source:ZFIN;Acc:ZDB-GENE-040704-65]
14. SMAD4 SMAD4 3233 2.423 - - 0.783 - - 0.784 - - 0.856
15. u2af2b ENSDARG00000011740 6946 2.399 - - 0.787 - - 0.811 0.801 - - U2 small nuclear RNA auxiliary factor 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1881]
16. srsf9 ENSDARG00000008097 2405 2.398 - - 0.713 - - - - 0.841 0.844 serine/arginine-rich splicing factor 9 [Source:ZFIN;Acc:ZDB-GENE-040426-2397]
17. nucks1a ENSDARG00000078473 28285 2.389 - 0.771 0.849 - - 0.769 - - - nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
18. ep300b ENSDARG00000061108 5173 2.382 - - 0.790 - - - 0.724 0.868 - E1A binding protein p300 b [Source:ZFIN;Acc:ZDB-GENE-080403-15]
19. txnrd1 11401 2.372 - - - 0.731 0.933 - 0.708 - - thioredoxin reductase 1
20. ctnnb1 ENSDARG00000014571 12004 2.367 - 0.778 0.813 - - 0.776 - - - catenin (cadherin-associated protein), beta 1 [Source:ZFIN;Acc:ZDB-GENE-980526-362]
21. cbx3a ENSDARG00000003860 4922 2.365 - 0.735 - - - - 0.810 0.820 - chromobox homolog 3a (HP1 gamma homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-1158]
22. ppp2r2d ENSDARG00000102009 5710 2.344 - - - 0.721 - 0.775 0.848 - - protein phosphatase 2, regulatory subunit B, delta [Source:ZFIN;Acc:ZDB-GENE-040426-2086]
23. dab2ipa ENSDARG00000069484 1138 2.337 - - 0.795 - - 0.746 - - 0.796 DAB2 interacting protein a [Source:ZFIN;Acc:ZDB-GENE-081104-516]
24. hat1 ENSDARG00000034916 5712 2.336 - - - - 0.761 0.808 - - 0.767 histone acetyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040912-99]
25. ddx19 ENSDARG00000005699 4602 2.323 - - 0.701 - 0.913 - 0.709 - - DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-020419-30]
26. snrpd2 ENSDARG00000040440, ENSDARG00000110285 4301 2.32 - - - - - - 0.820 0.712 0.788 small nuclear ribonucleoprotein D2 polypeptide [Source:ZFIN;Acc:ZDB-GENE-040914-10]
27. mcm5 ENSDARG00000019507 6407 2.314 - 0.777 - 0.731 - - - 0.806 - minichromosome maintenance complex component 5 [Source:ZFIN;Acc:ZDB-GENE-021209-1]
28. caprin1a ENSDARG00000009346, ENSDARG00000112212 9675 2.309 - 0.844 0.752 - - - - 0.713 - cell cycle associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-040801-226]
29. znf865 ENSDARG00000036698 15532 2.308 - - - - - 0.712 0.787 - 0.809 zinc finger protein 865 [Source:ZFIN;Acc:ZDB-GENE-060503-896]
30. ppig ENSDARG00000044431 3427 2.306 - 0.715 0.745 - - - - 0.846 - peptidylprolyl isomerase G (cyclophilin G) [Source:ZFIN;Acc:ZDB-GENE-040426-2822]
31. chd4a ENSDARG00000063535, ENSDARG00000111791 4059 2.299 - - - 0.717 0.836 - - 0.746 - chromodomain helicase DNA binding protein 4a [Source:ZFIN;Acc:ZDB-GENE-041111-187]
32. ptenb ENSDARG00000056623 5783 2.295 - 0.803 - - 0.706 - 0.786 - - phosphatase and tensin homolog B [Source:ZFIN;Acc:ZDB-GENE-030616-47]
33. BX511086.1 BX511086.1 8308 2.288 - 0.762 0.745 - - - 0.781 - -
34. usp7 ENSDARG00000073710 7017 2.288 - - 0.796 - - - 0.736 0.756 - ubiquitin specific peptidase 7 (herpes virus-associated) [Source:ZFIN;Acc:ZDB-GENE-030131-3656]
35. ctbp1 ENSDARG00000057007, ENSDARG00000115804 5795 2.267 - - 0.784 0.756 - - 0.727 - - C-terminal binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-010130-1]
36. TNRC6A ENSDARG00000079688 14433 2.258 - - 0.798 - - 0.706 0.754 - - trinucleotide repeat containing 6a [Source:ZFIN;Acc:ZDB-GENE-030131-2519]
37. fen1 ENSDARG00000011404 3358 2.255 - - 0.745 0.742 - - 0.768 - - flap structure-specific endonuclease 1 [Source:ZFIN;Acc:ZDB-GENE-031112-11]
38. smc1al ENSDARG00000058203 8838 2.252 - - 0.762 - - - 0.741 - 0.749 structural maintenance of chromosomes 1A, like [Source:ZFIN;Acc:ZDB-GENE-040426-57]
39. scaf1 ENSDARG00000054010 3752 2.251 - 0.731 0.724 - - - 0.796 - - SR-related CTD-associated factor 1 [Source:ZFIN;Acc:ZDB-GENE-120215-214]
40. smek1 ENSDARG00000042187 3509 2.242 - 0.737 0.711 - - - 0.794 - - SMEK homolog 1, suppressor of mek1 (Dictyostelium) [Source:ZFIN;Acc:ZDB-GENE-030131-3958]
41. caprin1b ENSDARG00000054272 7033 2.241 0.741 - - - - 0.760 - - 0.740 cell cycle associated protein 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2020]
42. lypla2 ENSDARG00000053656 8971 2.235 - 0.741 - - - 0.710 0.784 - - lysophospholipase II [Source:ZFIN;Acc:ZDB-GENE-040426-1715]
43. prmt1 ENSDARG00000010246 11311 2.231 - 0.776 0.743 - - - 0.712 - - protein arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-693]
44. chd9 ENSDARG00000074498, ENSDARG00000112964 2603 2.227 - 0.752 0.731 - - - 0.744 - - chromodomain helicase DNA binding protein 9 [Source:ZFIN;Acc:ZDB-GENE-030131-497]
45. pygo2 ENSDARG00000036772 2510 2.212 - 0.776 0.715 - - - 0.721 - - pygopus homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-050809-108]
46. celf2 ENSDARG00000002131, ENSDARG00000110267 15605 2.186 0.707 0.752 - - - - 0.727 - - cugbp, Elav-like family member 2 [Source:ZFIN;Acc:ZDB-GENE-030826-35]
47. cct8 ENSDARG00000008243 6843 2.154 - 0.735 - - - 0.704 - 0.715 - chaperonin containing TCP1, subunit 8 (theta) [Source:ZFIN;Acc:ZDB-GENE-040426-876]
48. kpna3 ENSDARG00000052641 5347 1.745 - 0.875 - - - - 0.870 - - karyopherin alpha 3 (importin alpha 4) [Source:ZFIN;Acc:ZDB-GENE-030616-541]
49. sdc4 ENSDARG00000059906 10105 1.707 - 0.901 - - - - 0.806 - - syndecan 4 [Source:ZFIN;Acc:ZDB-GENE-061111-1]
50. kidins220b ENSDARG00000017338 1937 1.704 - - - - 0.842 - - 0.862 - kinase D-interacting substrate 220b [Source:ZFIN;Acc:ZDB-GENE-030131-7824]
51. stk35l ENSDARG00000057497 3582 1.69 - - - - - - 0.861 0.829 - serine/threonine kinase 35, like [Source:ZFIN;Acc:ZDB-GENE-041212-52]
52. fzd7a ENSDARG00000060004, ENSDARG00000115544 4171 1.69 - - - - - 0.805 - 0.885 - frizzled class receptor 7a [Source:ZFIN;Acc:ZDB-GENE-990415-223]
53. RNF38 ENSDARG00000062055 3901 1.684 - - - - 0.837 - 0.847 - - ring finger protein 38 [Source:ZFIN;Acc:ZDB-GENE-030131-8693]
54. srpk1a ENSDARG00000073997, ENSDARG00000116973 2424 1.679 - 0.824 - - - - 0.855 - - SRSF protein kinase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2399]
55. tmeff1b ENSDARG00000056740 11253 1.679 - - - - 0.952 - - 0.727 - transmembrane protein with EGF-like and two follistatin-like domains 1b [Source:ZFIN;Acc:ZDB-GENE-050706-143]
56. pl10 pl10 10795 1.675 - 0.878 - - - - 0.797 - -
57. Sep-06 Sep-06 5465 1.665 - 0.805 - - - - 0.860 - -
58. cand1 ENSDARG00000017841 8164 1.664 - 0.801 - - 0.863 - - - - cullin-associated and neddylation-dissociated 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2872]
59. fam76b ENSDARG00000012432 2722 1.663 - - - - - - 0.779 0.884 - family with sequence similarity 76, member B [Source:ZFIN;Acc:ZDB-GENE-030131-6955]
60. gna11b ENSDARG00000053326 5118 1.657 - - - - - 0.826 0.831 - - guanine nucleotide binding protein (G protein), alpha 11b (Gq class) [Source:ZFIN;Acc:ZDB-GENE-041121-9]
61. CREBZF ENSDARG00000089787 4261 1.654 - 0.747 - - - - - 0.907 - CREB/ATF bZIP transcription factor [Source:ZFIN;Acc:ZDB-GENE-030131-8015]
62. grb2b ENSDARG00000038059 9050 1.653 - - - - - 0.934 0.719 - - growth factor receptor-bound protein 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1975]
63. ylpm1 ENSDARG00000043680 7676 1.647 - - 0.822 - - - 0.825 - - YLP motif containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2196]
64. MAPRE2 ENSDARG00000099943 3041 1.646 - 0.811 - - 0.835 - - - - microtubule-associated protein, RP/EB family, member 2 [Source:ZFIN;Acc:ZDB-GENE-071004-41]
65. huwe1 ENSDARG00000016782 6493 1.639 0.789 - - - - - - 0.850 - HECT, UBA and WWE domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-081104-387]
66. nat8l ENSDARG00000077256, ENSDARG00000115322 3513 1.638 - - 0.832 - - - - - 0.806 N-acetyltransferase 8-like [Source:ZFIN;Acc:ZDB-GENE-030729-4]
67. wdfy1 ENSDARG00000005425 3628 1.636 - - - - - - 0.849 - 0.787 WD repeat and FYVE domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-041024-4]
68. mcm4 ENSDARG00000040041 7971 1.634 - - - - 0.790 - - - 0.844 minichromosome maintenance complex component 4 [Source:ZFIN;Acc:ZDB-GENE-030131-9544]
69. arf2 arf2 12369 1.632 - 0.794 - - 0.838 - - - -
70. ZNF609 ZNF609 2176 1.63 - - - - 0.876 - - - 0.754
71. nhsl1b ENSDARG00000042627 3697 1.629 - 0.767 - - 0.862 - - - - NHS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040910-1]
72. arhgap1 ENSDARG00000024324 6904 1.621 - - - - - - 0.762 0.859 - Rho GTPase activating protein 1 [Source:ZFIN;Acc:ZDB-GENE-050417-305]
73. kmt2cb ENSDARG00000075560 4816 1.612 - 0.780 - - - - - - 0.832 lysine (K)-specific methyltransferase 2Cb [Source:ZFIN;Acc:ZDB-GENE-070705-340]
74. atp6ap2 ENSDARG00000008735 5096 1.611 - - - - - - - 0.853 0.758 ATPase H+ transporting accessory protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1960]
75. gbp ENSDARG00000040059 1939 1.609 - 0.785 - - - 0.824 - - - glycogen synthase kinase binding protein [Source:ZFIN;Acc:ZDB-GENE-990714-7]
76. GABARAP GABARAP 8341 1.606 - 0.804 - - - - 0.802 - -
77. tm2d3 ENSDARG00000076618 2310 1.606 - - - - - 0.789 0.817 - - TM2 domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-070620-20]
78. gpkow ENSDARG00000029612 1395 1.606 - - - - - - - 0.855 0.751 G patch domain and KOW motifs [Source:ZFIN;Acc:ZDB-GENE-030616-159]
79. rimkla ENSDARG00000016830, ENSDARG00000112193 4111 1.605 - 0.773 - - - - 0.832 - - ribosomal modification protein rimK-like family member A [Source:ZFIN;Acc:ZDB-GENE-040912-20]
80. ier5 ENSDARG00000009881, ENSDARG00000111680 11432 1.605 - 0.805 - - - 0.800 - - - immediate early response 5 [Source:ZFIN;Acc:ZDB-GENE-030616-127]
81. hnrnpl2 ENSDARG00000059303, ENSDARG00000114431 6633 1.605 - - - - - 0.821 0.784 - - heterogeneous nuclear ribonucleoprotein L2 [Source:ZFIN;Acc:ZDB-GENE-040426-2707]
82. hddc3 ENSDARG00000020473 2814 1.604 - - - - - 0.760 - 0.844 - HD domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-050417-377]
83. mllt3 ENSDARG00000006754 985 1.603 - - - - - 0.740 - 0.863 - MLLT3, super elongation complex subunit [Source:ZFIN;Acc:ZDB-GENE-050417-356]
84. h2afy2_1 ENSDARG00000087897 9887 1.6 - - - - 0.816 - 0.784 - - H2A histone family, member Y2 [Source:ZFIN;Acc:ZDB-GENE-050913-114]
85. btg3 ENSDARG00000069065, ENSDARG00000115730 1632 1.6 - 0.723 - - - - - 0.877 - B-cell translocation gene 3 [Source:ZFIN;Acc:ZDB-GENE-031113-19]
86. nop56 ENSDARG00000012820 15231 1.598 - - - - 0.843 0.755 - - - NOP56 ribonucleoprotein homolog [Source:ZFIN;Acc:ZDB-GENE-040109-1]
87. hsf2 ENSDARG00000053097 1188 1.598 - 0.758 - - 0.840 - - - - heat shock transcription factor 2 [Source:ZFIN;Acc:ZDB-GENE-011128-1]
88. vta1 ENSDARG00000013732 6072 1.596 - - - - 0.806 - - 0.790 - vesicle (multivesicular body) trafficking 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2154]
89. snrnp70 ENSDARG00000077126 5921 1.596 - 0.804 0.792 - - - - - - small nuclear ribonucleoprotein 70 (U1) [Source:ZFIN;Acc:ZDB-GENE-040825-2]
90. greb1 ENSDARG00000070794 1741 1.596 - - - - 0.842 - 0.754 - - growth regulating estrogen receptor binding 1 [Source:ZFIN;Acc:ZDB-GENE-070112-332]
91. psenen ENSDARG00000068698 2777 1.596 - 0.735 - - - - - 0.861 - presenilin enhancer, gamma-secretase subunit [Source:ZFIN;Acc:ZDB-GENE-040218-1]
92. drg1 ENSDARG00000039345 7545 1.596 - - - - - - 0.710 0.886 - developmentally regulated GTP binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8767]
93. smarcb1b ENSDARG00000011594 2413 1.594 - - - - - - 0.775 - 0.819 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1b [Source:ZFIN;Acc:ZDB-GENE-991008-16]
94. cercam ENSDARG00000079049, ENSDARG00000109573 2228 1.594 - - - - 0.832 - 0.762 - - cerebral endothelial cell adhesion molecule [Source:ZFIN;Acc:ZDB-GENE-030131-9787]
95. ZNF70_2 ZNF70_2 1866 1.594 - - - - 0.727 - - 0.867 -
96. hoxb3a ENSDARG00000029263 5493 1.592 - 0.725 - - 0.867 - - - - homeobox B3a [Source:ZFIN;Acc:ZDB-GENE-990415-104]
97. igf1ra ENSDARG00000027423, ENSDARG00000113936, ENSDARG00000116846 2228 1.588 - - - - - 0.797 0.791 - - insulin-like growth factor 1a receptor [Source:ZFIN;Acc:ZDB-GENE-020503-1]
98. supt5h ENSDARG00000042724, ENSDARG00000111598 6419 1.586 - - - - - 0.797 0.789 - - SPT5 homolog, DSIF elongation factor subunit [Source:ZFIN;Acc:ZDB-GENE-001207-1]
99. tial1 ENSDARG00000009525 1856 1.585 - - - - - - 0.702 0.883 - TIA1 cytotoxic granule-associated RNA binding protein-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1547]
100. e2f7 ENSDARG00000008986 1439 1.583 - - - - 0.842 0.741 - - - E2F transcription factor 7 [Source:ZFIN;Acc:ZDB-GENE-030131-3527]

There are 1561 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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