Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for srm

Gene Name Gene ID Reads Annotation
srm ENSDARG00000055760 6572 spermidine synthase [Source:ZFIN;Acc:ZDB-GENE-040426-1183]










Genes with expression patterns similar to srm

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. srm ENSDARG00000055760 6572 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 spermidine synthase [Source:ZFIN;Acc:ZDB-GENE-040426-1183]
2. bnip4 ENSDARG00000022832, ENSDARG00000117207 3100 2.95 - - - 0.993 0.966 - - - 0.991 BCL2 interacting protein 4 [Source:ZFIN;Acc:ZDB-GENE-051113-212]
3. zgc:77262 ENSDARG00000044545 5563 2.762 - 0.784 - 0.989 - - - - 0.989 zgc:77262 [Source:ZFIN;Acc:ZDB-GENE-040426-1811]
4. emc6 ENSDARG00000035282 4981 2.749 - 0.839 - 0.985 - - 0.925 - - ER membrane protein complex subunit 6 [Source:ZFIN;Acc:ZDB-GENE-030131-9164]
5. cdc42 ENSDARG00000044573 11795 2.625 - 0.763 - - 0.970 - 0.892 - - cell division cycle 42 [Source:ZFIN;Acc:ZDB-GENE-030131-8783]
6. erh ENSDARG00000032866 20633 2.574 - - - 0.749 - - 0.880 - 0.945 enhancer of rudimentary homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-990415-57]
7. serbp1a ENSDARG00000074242 10818 2.297 0.702 - - - - 0.736 0.859 - - SERPINE1 mRNA binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-7389]
8. zc3h18 ENSDARG00000062506 1676 1.972 - - - - - - 0.987 - 0.985 zinc finger CCCH-type containing 18 [Source:ZFIN;Acc:ZDB-GENE-050419-13]
9. thoc7 ENSDARG00000015394 3824 1.967 - - - 0.990 0.977 - - - - THO complex 7 [Source:ZFIN;Acc:ZDB-GENE-040801-17]
10. wdr82 ENSDARG00000014083 3159 1.965 - - - - - - 0.977 - 0.988 WD repeat domain 82 [Source:ZFIN;Acc:ZDB-GENE-030131-333]
11. slc43a1a ENSDARG00000037393, ENSDARG00000113118 5797 1.963 - - - - - - 0.985 - 0.978 solute carrier family 43 (amino acid system L transporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-030131-6327]
12. glud1a ENSDARG00000008816, ENSDARG00000114252 3468 1.962 - - - 0.992 0.970 - - - - glutamate dehydrogenase 1a [Source:ZFIN;Acc:ZDB-GENE-030114-2]
13. basp1 ENSDARG00000053358, ENSDARG00000110677 2590 1.957 - - - - - - 0.974 - 0.983 brain abundant, membrane attached signal protein 1 [Source:ZFIN;Acc:ZDB-GENE-070424-158]
14. elf2b ENSDARG00000079626, ENSDARG00000117064 3057 1.953 - - - - 0.963 - - - 0.990 E74-like factor 2b (ets domain transcription factor) [Source:ZFIN;Acc:ZDB-GENE-031215-1]
15. C6H2orf40 C6H2orf40 4224 1.947 - - - - 0.975 - - - 0.972
16. ENSDARG00000058255 ENSDARG00000058255 1715 1.941 - - - - - - 0.951 - 0.990
17. irf2bp2a ENSDARG00000004702 6719 1.939 - - - - 0.955 - - - 0.984 interferon regulatory factor 2 binding protein 2a [Source:ZFIN;Acc:ZDB-GENE-030131-7809]
18. hadhb ENSDARG00000102055 9700 1.925 - - - 0.987 0.938 - - - - hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta [Source:ZFIN;Acc:ZDB-GENE-030131-8550]
19. nmt1a ENSDARG00000052966 5918 1.922 - - - - 0.974 - 0.948 - - N-myristoyltransferase 1a [Source:ZFIN;Acc:ZDB-GENE-050522-477]
20. si:dkey-251i10.2 ENSDARG00000093957 4424 1.901 - - - - 0.973 - - - 0.928 si:dkey-251i10.2 [Source:ZFIN;Acc:ZDB-GENE-050506-102]
21. ubr2 ENSDARG00000070164 3960 1.897 - - - - 0.952 - 0.945 - - ubiquitin protein ligase E3 component n-recognin 2 [Source:ZFIN;Acc:ZDB-GENE-081107-29]
22. ckap5 ENSDARG00000102674 5068 1.895 - - - - 0.948 - 0.947 - - cytoskeleton associated protein 5 [Source:ZFIN;Acc:ZDB-GENE-051120-174]
23. eif4a3 ENSDARG00000102978 16162 1.877 - - - - 0.934 - - - 0.943 eukaryotic translation initiation factor 4A3 [Source:ZFIN;Acc:ZDB-GENE-040426-915]
24. fam89a ENSDARG00000079979 4375 1.83 - 0.867 - - 0.963 - - - - family with sequence similarity 89, member A [Source:ZFIN;Acc:ZDB-GENE-111019-1]
25. myo1c myo1c 4978 1.829 - - - - - - 0.847 - 0.982
26. mab21l1 ENSDARG00000102047 4665 1.818 - - - - 0.965 - - - 0.853 mab-21-like 1 [Source:ZFIN;Acc:ZDB-GENE-020516-1]
27. napa napa 4444 1.799 - 0.809 - 0.990 - - - - -
28. CU928061.2 CU928061.2 4550 1.785 - 0.808 - - - - - - 0.977
29. timm23 timm23 2712 1.779 - - - - - 0.794 0.985 - -
30. azin1b ENSDARG00000035869, ENSDARG00000115647 9761 1.776 - 0.794 - 0.982 - - - - - antizyme inhibitor 1b [Source:ZFIN;Acc:ZDB-GENE-030121-1]
31. foxp1a ENSDARG00000004843 3961 1.774 - - - - - 0.785 - - 0.989 forkhead box P1a [Source:ZFIN;Acc:ZDB-GENE-060929-624]
32. ptgesl ENSDARG00000068415, ENSDARG00000110236 1718 1.756 - 0.775 - - - - 0.981 - - prostaglandin E synthase 2-like [Source:ZFIN;Acc:ZDB-GENE-040426-1063]
33. snrpd1 ENSDARG00000011648 8615 1.75 - 0.783 - - - - 0.967 - - small nuclear ribonucleoprotein D1 polypeptide [Source:ZFIN;Acc:ZDB-GENE-020419-14]
34. taf10 ENSDARG00000068641 3333 1.75 - 0.765 - 0.985 - - - - - TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-060526-334]
35. pdcd4a ENSDARG00000021702 7293 1.746 - 0.757 - 0.989 - - - - - programmed cell death 4a [Source:ZFIN;Acc:ZDB-GENE-040426-1920]
36. si:dkey-82i20.5 ENSDARG00000116717 2965 1.737 - 0.769 - - - - 0.968 - - si:dkey-82i20.5 [Source:ZFIN;Acc:ZDB-GENE-110914-101]
37. mpdu1b ENSDARG00000040265 1968 1.737 - 0.750 - - - - 0.987 - - mannose-P-dolichol utilization defect 1b [Source:ZFIN;Acc:ZDB-GENE-040625-135]
38. nucks1b ENSDARG00000012777 4468 1.732 - - - 0.987 - 0.745 - - - nuclear casein kinase and cyclin-dependent kinase substrate 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4544]
39. pes ENSDARG00000018902 3286 1.721 0.736 - - - - - 0.985 - - pescadillo [Source:ZFIN;Acc:ZDB-GENE-990415-206]
40. ndufa10 ENSDARG00000013333 6597 1.716 - 0.726 - 0.990 - - - - - NADH:ubiquinone oxidoreductase subunit A10 [Source:ZFIN;Acc:ZDB-GENE-030131-670]
41. prickle3 ENSDARG00000073996 840 1.716 - 0.747 - - 0.969 - - - - prickle homolog 3 [Source:ZFIN;Acc:ZDB-GENE-081105-86]
42. SH3BGRL ENSDARG00000058302 4525 1.716 - 0.728 - 0.988 - - - - - SH3 domain binding glutamate-rich protein like [Source:ZFIN;Acc:ZDB-GENE-040426-1376]
43. slc20a1b ENSDARG00000010641 2564 1.713 - 0.735 - - 0.978 - - - - solute carrier family 20 (phosphate transporter), member 1b [Source:ZFIN;Acc:ZDB-GENE-030131-260]
44. CABZ01044136.1 CABZ01044136.1 2596 1.711 - 0.722 - - - - - - 0.989
45. si:ch211-196l7.4 ENSDARG00000095451 3766 1.709 - 0.755 - - - - 0.954 - - si:ch211-196l7.4 [Source:ZFIN;Acc:ZDB-GENE-050419-122]
46. dnajc9 ENSDARG00000031293, ENSDARG00000111989 4082 1.707 - 0.721 - - - - 0.986 - - DnaJ (Hsp40) homolog, subfamily C, member 9 [Source:ZFIN;Acc:ZDB-GENE-040718-130]
47. llgl2 ENSDARG00000023920 2617 1.707 - - - 0.993 - 0.714 - - - lethal giant larvae homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-9877]
48. eif4e1c ENSDARG00000012274, ENSDARG00000116158 4768 1.703 - - - 0.989 - 0.714 - - - eukaryotic translation initiation factor 4E family member 1c [Source:ZFIN;Acc:ZDB-GENE-050417-398]
49. chchd1 ENSDARG00000029100 2121 1.703 - - - - - 0.725 0.978 - - coiled-coil-helix-coiled-coil-helix domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060810-176]
50. kif5ba ENSDARG00000074131, ENSDARG00000103394 5232 1.699 - 0.765 - - - - 0.934 - - kinesin family member 5B, a [Source:ZFIN;Acc:ZDB-GENE-070629-2]
51. chd4b ENSDARG00000025789 14299 1.698 - - - - 0.905 - 0.793 - - chromodomain helicase DNA binding protein 4b [Source:ZFIN;Acc:ZDB-GENE-030131-4532]
52. pdcd6 ENSDARG00000005220 1535 1.693 - 0.726 - - - - 0.967 - - programmed cell death 6 [Source:ZFIN;Acc:ZDB-GENE-040426-1307]
53. etnk1 ENSDARG00000019420 2166 1.689 - 0.747 - - - - 0.942 - - ethanolamine kinase 1 [Source:ZFIN;Acc:ZDB-GENE-030328-21]
54. spcs1 ENSDARG00000059298 5327 1.676 - - 0.701 - 0.975 - - - - signal peptidase complex subunit 1 [Source:ZFIN;Acc:ZDB-GENE-050809-130]
55. DYNC1I2 DYNC1I2 4131 1.645 - 0.707 - - - - 0.938 - -
56. NDUFA3 ENSDARG00000041400 7939 1.639 0.721 - - - - - 0.918 - - NADH:ubiquinone oxidoreductase subunit A3 [Source:ZFIN;Acc:ZDB-GENE-040801-18]
57. tcp1 ENSDARG00000017891 7946 1.624 - - - - 0.915 - 0.709 - - t-complex 1 [Source:ZFIN;Acc:ZDB-GENE-990714-24]
58. inppl1a ENSDARG00000104222 6256 1.601 - 0.707 - - - - 0.894 - - inositol polyphosphate phosphatase-like 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3904]
59. RPS17L RPS17L 51105 1.594 - - - 0.868 - 0.726 - - -
60. ncl ENSDARG00000002710 16951 1.581 - - - 0.802 - 0.779 - - - nucleolin [Source:ZFIN;Acc:ZDB-GENE-030131-6986]
61. col5a1 ENSDARG00000012593 24177 1.576 - - - - 0.772 - - - 0.804 procollagen, type V, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-041105-6]
62. G3BP2 ENSDARG00000014790 9380 1.57 - 0.866 - - - 0.704 - - - GTPase activating protein (SH3 domain) binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-070112-1972]
63. BX511245.1 ENSDARG00000096871 7523 1.554 - - - - - - 0.771 - 0.783
64. flot1b ENSDARG00000037998 13600 1.546 0.735 - - - - - 0.811 - - flotillin 1b [Source:ZFIN;Acc:ZDB-GENE-020430-2]
65. tmod2 ENSDARG00000002571 5119 1.538 - 0.769 - - - - 0.769 - - tropomodulin 2 [Source:ZFIN;Acc:ZDB-GENE-040912-185]
66. wls ENSDARG00000009534 8719 1.516 - - 0.705 - 0.811 - - - - wntless Wnt ligand secretion mediator [Source:ZFIN;Acc:ZDB-GENE-040426-2161]
67. ogdha ENSDARG00000034270 10334 1.505 0.744 0.761 - - - - - - - oxoglutarate (alpha-ketoglutarate) dehydrogenase a (lipoamide) [Source:ZFIN;Acc:ZDB-GENE-030131-2143]
68. atp5j 4272 1.5 - 0.790 - - - 0.710 - - - ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6, transcript variant X2
69. EIF4G1 EIF4G1 19676 1.488 0.718 - - - - 0.770 - - -
70. cand1 ENSDARG00000017841 8164 1.486 0.750 0.736 - - - - - - - cullin-associated and neddylation-dissociated 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2872]
71. kpna3 ENSDARG00000052641 5347 1.444 - 0.732 - - - 0.712 - - - karyopherin alpha 3 (importin alpha 4) [Source:ZFIN;Acc:ZDB-GENE-030616-541]
72. arl1 ENSDARG00000101680 5973 1.435 - 0.709 - - - - 0.726 - - ADP-ribosylation factor-like 1 [Source:ZFIN;Acc:ZDB-GENE-040718-175]
73. golt1bb ENSDARG00000059308 1746 1.42 - 0.704 - - - 0.716 - - - golgi transport 1Bb [Source:ZFIN;Acc:ZDB-GENE-050913-94]
74. spint2 ENSDARG00000069476, ENSDARG00000113265 4147 0.994 - - - 0.994 - - - - - serine peptidase inhibitor, Kunitz type, 2 [Source:ZFIN;Acc:ZDB-GENE-061013-323]
75. C13H9orf72 C13H9orf72 2310 0.994 - - - 0.994 - - - - -
76. angptl4 ENSDARG00000035859 2701 0.994 - - - 0.994 - - - - - angiopoietin-like 4 [Source:ZFIN;Acc:ZDB-GENE-041111-222]
77. usp4 ENSDARG00000014770 1684 0.994 - - - 0.994 - - - - - ubiquitin specific peptidase 4 (proto-oncogene) [Source:ZFIN;Acc:ZDB-GENE-041008-187]
78. ppp2r5a ENSDARG00000027017 2397 0.993 - - - 0.993 - - - - - protein phosphatase 2, regulatory subunit B', alpha isoform [Source:ZFIN;Acc:ZDB-GENE-040724-174]
79. ZNF628 1104 0.993 - - - 0.993 - - - - - zinc finger protein 628, transcript variant X3
80. ccdc22 ENSDARG00000052379 2276 0.993 - - - 0.993 - - - - - coiled-coil domain containing 22 [Source:ZFIN;Acc:ZDB-GENE-050913-93]
81. cpt2 ENSDARG00000038618, ENSDARG00000112216 1040 0.993 - - - 0.993 - - - - - carnitine palmitoyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6719]
82. exosc8 ENSDARG00000068755 951 0.993 - - - 0.993 - - - - - exosome component 8 [Source:ZFIN;Acc:ZDB-GENE-030131-1736]
83. eppk1 ENSDARG00000096359 4315 0.993 - - - 0.993 - - - - - epiplakin 1 [Source:ZFIN;Acc:ZDB-GENE-030416-1]
84. hexb ENSDARG00000034368 3505 0.993 - - - 0.993 - - - - - hexosaminidase B (beta polypeptide) [Source:ZFIN;Acc:ZDB-GENE-030131-2333]
85. cbx3b ENSDARG00000092158 1976 0.992 - - - 0.992 - - - - - chromobox homolog 3b [Source:ZFIN;Acc:ZDB-GENE-070628-2]
86. mbtps2 ENSDARG00000057577 1285 0.992 - - - 0.992 - - - - - membrane-bound transcription factor peptidase, site 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6598]
87. atp1b3a ENSDARG00000015790 12310 0.992 - - - 0.992 - - - - - ATPase Na+/K+ transporting subunit beta 3a [Source:ZFIN;Acc:ZDB-GENE-990415-167]
88. atat1 ENSDARG00000004472 700 0.992 - - - 0.992 - - - - - alpha tubulin acetyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2120]
89. ddb1 ENSDARG00000074431 1054 0.992 - - - - - - 0.992 - - damage-specific DNA binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1272]
90. elmod2 ENSDARG00000101669 3101 0.992 - - - 0.992 - - - - - ELMO/CED-12 domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-060824-2]
91. rad51 ENSDARG00000041411, ENSDARG00000111948 1056 0.992 - - - - - - 0.992 - - RAD51 recombinase [Source:ZFIN;Acc:ZDB-GENE-040426-2286]
92. abcc2 ENSDARG00000014031, ENSDARG00000116140 1158 0.992 - - - 0.992 - - - - - ATP-binding cassette, sub-family C (CFTR/MRP), member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1523]
93. prss35 ENSDARG00000100691, ENSDARG00000109353 2333 0.992 - - - 0.992 - - - - - protease, serine, 35 [Source:ZFIN;Acc:ZDB-GENE-040704-55]
94. RAPGEF2 ENSDARG00000005482 2068 0.992 - - - 0.992 - - - - - Rap guanine nucleotide exchange factor (GEF) 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6959]
95. wu:fj13e08 1223 0.992 - - - 0.992 - - - - - wu:fj13e08
96. pcid2 ENSDARG00000013802 1596 0.991 - - - - - - 0.991 - - PCI domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-041114-79]
97. zeb2a ENSDARG00000062338, ENSDARG00000111349, ENSDARG00000115964 6087 0.991 - - - 0.991 - - - - - zinc finger E-box binding homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-070912-553]
98. CR376738.1 ENSDARG00000100433 660 0.991 - - - - - - - - 0.991
99. greb1 ENSDARG00000070794 1741 0.991 - - - 0.991 - - - - - growth regulating estrogen receptor binding 1 [Source:ZFIN;Acc:ZDB-GENE-070112-332]
100. rras2 ENSDARG00000036252, ENSDARG00000111642 1714 0.991 - - - - - - 0.991 - - RAS related 2 [Source:ZFIN;Acc:ZDB-GENE-050417-352]

There are 1052 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA