Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for srek1

Gene Name Gene ID Reads Annotation
srek1 ENSDARG00000009764, ENSDARG00000114600 319 splicing regulatory glutamine/lysine-rich protein 1 [Source:ZFIN;Acc:ZDB-GENE-040801-132]










Genes with expression patterns similar to srek1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. srek1 ENSDARG00000009764, ENSDARG00000114600 319 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 splicing regulatory glutamine/lysine-rich protein 1 [Source:ZFIN;Acc:ZDB-GENE-040801-132]
2. arhgap35 254 1.696 - 0.912 - - - - 0.784 - - Rho GTPase activating protein 35b, transcript variant X2
3. evx2 ENSDARG00000059255 317 1.657 - 0.851 - - - 0.806 - - - even-skipped homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-980526-215]
4. COX5B ENSDARG00000015978 70 1.652 - 0.851 - - - 0.801 - - - cytochrome c oxidase subunit 5B [Source:HGNC Symbol;Acc:HGNC:2269]
5. rap2ab ENSDARG00000040246 63 1.63 - 0.908 - - - 0.722 - - - RAP2A, member of RAS oncogene family b [Source:ZFIN;Acc:ZDB-GENE-090312-116]
6. gfod2 ENSDARG00000061145 263 1.629 0.721 0.908 - - - - - - - glucose-fructose oxidoreductase domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-061103-64]
7. cdkn2d ENSDARG00000094176 190 1.592 - 0.828 - - - 0.764 - - - cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) [Source:ZFIN;Acc:ZDB-GENE-110316-1]
8. krt1-c5 ENSDARG00000026979 325 1.581 0.730 0.851 - - - - - - - keratin, type 1, gene c5 [Source:ZFIN;Acc:ZDB-GENE-060316-3]
9. si:ch211-85n16.3 ENSDARG00000096346 1095 1.579 - 0.787 - - - - 0.792 - - si:ch211-85n16.3 [Source:ZFIN;Acc:ZDB-GENE-120215-137]
10. WBP1 ENSDARG00000098583 64 1.571 - 0.780 - - - 0.791 - - - WW domain binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1830]
11. gpr56 gpr56 523 1.569 - - - - - 0.826 - 0.743 -
12. osgep ENSDARG00000045846 738 1.567 0.778 0.789 - - - - - - - O-sialoglycoprotein endopeptidase [Source:ZFIN;Acc:ZDB-GENE-030131-7880]
13. zfr2 ENSDARG00000071683 780 1.567 0.825 - - - - - 0.742 - - zinc finger RNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-070705-184]
14. si:dkey-228i19.32 si:dkey-228i19.32 9 1.553 - 0.851 - - - 0.702 - - -
15. TIMM21 ENSDARG00000071594 722 1.547 - 0.821 - - - - 0.726 - - translocase of inner mitochondrial membrane 21 [Source:HGNC Symbol;Acc:HGNC:25010]
16. JMJD1C JMJD1C 289 1.547 0.847 0.700 - - - - - - -
17. si:dkey-117n7.5 ENSDARG00000089640 452 1.545 - - - - - - 0.783 0.762 - si:dkey-117n7.5 [Source:ZFIN;Acc:ZDB-GENE-060503-331]
18. wdr20b_1 ENSDARG00000041239 212 1.537 - 0.772 - - - - 0.765 - - WD repeat domain 20b [Source:ZFIN;Acc:ZDB-GENE-041014-234]
19. parp2 ENSDARG00000079202, ENSDARG00000111737 878 1.534 - - - - - 0.727 - 0.807 - poly (ADP-ribose) polymerase 2 [Source:ZFIN;Acc:ZDB-GENE-031113-6]
20. hmga1b ENSDARG00000070951 377 1.502 - 0.782 - - - 0.720 - - - high mobility group AT-hook 1b [Source:ZFIN;Acc:ZDB-GENE-061013-204]
21. AL954696.1 ENSDARG00000078442 768 1.497 - 0.756 - - - - - 0.741 - NOP9 nucleolar protein [Source:NCBI gene;Acc:100332577]
22. gria1a ENSDARG00000021352, ENSDARG00000111182, ENSDARG00000111756, ENSDARG00000112683 169 1.495 - 0.742 - - - 0.753 - - - glutamate receptor, ionotropic, AMPA 1a [Source:ZFIN;Acc:ZDB-GENE-020125-1]
23. exd2 ENSDARG00000016117 342 1.489 0.726 0.763 - - - - - - - exonuclease 3'-5' domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6387]
24. CU571169.5 CU571169.5 353 1.48 - - - - - 0.745 0.735 - -
25. GSTK1_1 GSTK1_1 316 1.479 - - - - - - 0.732 0.747 -
26. tspan13b ENSDARG00000070479 542 1.468 - - - - - 0.763 0.705 - - tetraspanin 13b [Source:ZFIN;Acc:ZDB-GENE-041010-45]
27. SAMD14 145 1.466 - 0.714 - - - 0.752 - - - sterile alpha motif domain containing 14, transcript variant X3
28. nlgn3b ENSDARG00000062376 171 1.459 - - - - - 0.756 - 0.703 - neuroligin 3b [Source:ZFIN;Acc:ZDB-GENE-060526-197]
29. 5S_rRNA_20 5S_rRNA_20 79 1.448 0.729 0.719 - - - - - - -
30. lbx2 ENSDARG00000025131 1388 1.447 - 0.713 - - - - 0.734 - - ladybird homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-001206-2]
31. MSS51 ENSDARG00000075463 428 1.441 - 0.733 - - - - 0.708 - - MSS51 mitochondrial translational activator [Source:ZFIN;Acc:ZDB-GENE-130530-775]
32. mkln1 ENSDARG00000025576 1122 1.435 - 0.701 - - - - - 0.734 - muskelin 1, intracellular mediator containing kelch motifs [Source:ZFIN;Acc:ZDB-GENE-030131-3942]
33. lmo2 ENSDARG00000095019 1098 1.432 - 0.720 - - - - 0.712 - - LIM domain only 2 (rhombotin-like 1) [Source:ZFIN;Acc:ZDB-GENE-980526-419]
34. mrps18b ENSDARG00000007065 2121 1.427 - 0.701 - - - - 0.726 - - mitochondrial ribosomal protein S18B [Source:ZFIN;Acc:ZDB-GENE-050417-278]
35. PAOX PAOX 251 1.424 - - - - - 0.706 0.718 - -
36. CU683901.1 CU683901.1 187 1.416 - - - - - 0.714 0.702 - -
37. TERF2IP ENSDARG00000103977 216 0.95 - 0.950 - - - - - - - telomeric repeat binding factor 2, interacting protein [Source:ZFIN;Acc:ZDB-GENE-131121-641]
38. CABZ01069519.1 CABZ01069519.1 64 0.933 - 0.933 - - - - - - -
39. si:ch73-257c13.2 ENSDARG00000074305 197 0.928 - 0.928 - - - - - - - si:ch73-257c13.2 [Source:ZFIN;Acc:ZDB-GENE-081104-269]
40. cnr1 ENSDARG00000009020 33 0.92 - 0.920 - - - - - - - cannabinoid receptor 1 [Source:ZFIN;Acc:ZDB-GENE-040312-3]
41. supv3l1 ENSDARG00000077728, ENSDARG00000111098 173 0.919 - 0.919 - - - - - - - SUV3-like helicase [Source:ZFIN;Acc:ZDB-GENE-030131-2838]
42. nlgn3a ENSDARG00000104786 91 0.917 - - - - - 0.917 - - - neuroligin 3a [Source:ZFIN;Acc:ZDB-GENE-071219-1]
43. six2b ENSDARG00000054878 567 0.914 - 0.914 - - - - - - - SIX homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-080723-23]
44. cx34.4 ENSDARG00000075854 168 0.909 - 0.909 - - - - - - - connexin 34.4 [Source:ZFIN;Acc:ZDB-GENE-040406-3]
45. tm7sf2 ENSDARG00000032816, ENSDARG00000116444 70 0.908 - 0.908 - - - - - - - transmembrane 7 superfamily member 2 [Source:ZFIN;Acc:ZDB-GENE-041212-19]
46. crmp1 ENSDARG00000056742 332 0.908 - 0.908 - - - - - - - collapsin response mediator protein 1 [Source:ZFIN;Acc:ZDB-GENE-050720-1]
47. si:ch211-197h24.7 si:ch211-197h24.7 25 0.908 - 0.908 - - - - - - -
48. CABZ01114098.1 CABZ01114098.1 28 0.908 - 0.908 - - - - - - -
49. si:ch211-274p24.3 si:ch211-274p24.3 72 0.908 - 0.908 - - - - - - -
50. zgc:113102 ENSDARG00000103530, ENSDARG00000113011 86 0.908 - 0.908 - - - - - - - zgc:113102 [Source:ZFIN;Acc:ZDB-GENE-050306-35]
51. hif1al2 ENSDARG00000044550 140 0.903 - 0.903 - - - - - - - hypoxia inducible factor 1 subunit alpha, like 2 [Source:ZFIN;Acc:ZDB-GENE-050211-2]
52. CENPF ENSDARG00000055133 436 0.899 - - - - - - - 0.899 - centromere protein F [Source:ZFIN;Acc:ZDB-GENE-041111-205]
53. slc9a3.1 ENSDARG00000058498 46 0.896 - 0.896 - - - - - - - solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-060503-545]
54. PEG3_29 PEG3_29 28 0.894 - 0.894 - - - - - - -
55. SMPDL3B ENSDARG00000010130 62 0.894 - 0.894 - - - - - - - sphingomyelin phosphodiesterase, acid-like 3B [Source:ZFIN;Acc:ZDB-GENE-041008-132]
56. znf280d ENSDARG00000077013 1387 0.894 - - - - - - 0.894 - - zinc finger protein 280D [Source:ZFIN;Acc:ZDB-GENE-030131-2260]
57. tab3 ENSDARG00000062063 525 0.891 - 0.891 - - - - - - - TGF-beta activated kinase 1 (MAP3K7) binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-060503-408]
58. nxt2 ENSDARG00000061527, ENSDARG00000113656 277 0.89 - 0.890 - - - - - - - nuclear transport factor 2-like export factor 2 [Source:ZFIN;Acc:ZDB-GENE-050521-1]
59. CABZ01072607.1 ENSDARG00000113761 784 0.889 - 0.889 - - - - - - - dynein cytoplasmic 2 heavy chain 1 [Source:NCBI gene;Acc:100332402]
60. ptpreb ENSDARG00000021151 739 0.888 - - - - - - - 0.888 - protein tyrosine phosphatase, receptor type, E, b [Source:ZFIN;Acc:ZDB-GENE-060503-263]
61. si:dkey-15h8.14 si:dkey-15h8.14 139 0.884 - 0.884 - - - - - - -
62. cacng6b ENSDARG00000046079 258 0.883 - 0.883 - - - - - - - calcium channel, voltage-dependent, gamma subunit 6b [Source:ZFIN;Acc:ZDB-GENE-100922-272]
63. tsnaxip1 ENSDARG00000030512 197 0.879 - - - - - - 0.879 - - translin-associated factor X interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-070424-39]
64. khdrbs2 ENSDARG00000069469 160 0.875 - - - - - 0.875 - - - KH domain containing, RNA binding, signal transduction associated 2 [Source:ZFIN;Acc:ZDB-GENE-061013-497]
65. gapvd1 ENSDARG00000090183, ENSDARG00000113177 611 0.873 - 0.873 - - - - - - - GTPase activating protein and VPS9 domains 1 [Source:ZFIN;Acc:ZDB-GENE-040718-117]
66. cdc16 ENSDARG00000055470, ENSDARG00000111307 347 0.872 - 0.872 - - - - - - - cell division cycle 16 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-051113-132]
67. SYT6 SYT6 64 0.87 - 0.870 - - - - - - -
68. IGLON5 ENSDARG00000022176 1353 0.869 - - - - - 0.869 - - - IgLON family member 5 [Source:HGNC Symbol;Acc:HGNC:34550]
69. si:dkey-15h14.4 si:dkey-15h14.4 118 0.869 - 0.869 - - - - - - -
70. KCNA3 KCNA3 748 0.868 - - - - - 0.868 - - -
71. zgc:109949 ENSDARG00000103413 426 0.868 0.868 - - - - - - - - zgc:109949 [Source:ZFIN;Acc:ZDB-GENE-050522-166]
72. fignl1 ENSDARG00000016427 636 0.866 - 0.866 - - - - - - - fidgetin-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1862]
73. csf1b ENSDARG00000068263 248 0.863 - - - - - 0.863 - - - colony stimulating factor 1b (macrophage) [Source:ZFIN;Acc:ZDB-GENE-061215-106]
74. fbxo18 ENSDARG00000062983, ENSDARG00000113423 1458 0.862 - - - - - - - 0.862 - F-box protein helicase 1 [Source:ZFIN;Acc:ZDB-GENE-041210-99]
75. sc:d0413 sc:d0413 121 0.861 - 0.861 - - - - - - -
76. nrn1la ENSDARG00000069368, ENSDARG00000112044, ENSDARG00000112869 16 0.861 - 0.861 - - - - - - - neuritin 1-like a [Source:NCBI gene;Acc:100004307]
77. CMTM8 CMTM8 71 0.861 - 0.861 - - - - - - -
78. znf804a ENSDARG00000027079 121 0.861 - 0.861 - - - - - - - zinc finger protein 804A [Source:ZFIN;Acc:ZDB-GENE-070912-632]
79. prdm2a ENSDARG00000090721 11 0.861 - 0.861 - - - - - - - PR domain containing 2, with ZNF domain a [Source:ZFIN;Acc:ZDB-GENE-081104-139]
80. rtn4rl1b ENSDARG00000098528 31 0.861 - 0.861 - - - - - - - reticulon 4 receptor-like 1b [Source:ZFIN;Acc:ZDB-GENE-040310-3]
81. si:dkey-104k17.1 si:dkey-104k17.1 13 0.861 - 0.861 - - - - - - -
82. cyb561 ENSDARG00000038176 55 0.861 - 0.861 - - - - - - - cytochrome b561 [Source:ZFIN;Acc:ZDB-GENE-070713-3]
83. MYOM2 MYOM2 6 0.861 - 0.861 - - - - - - -
84. zgc:174888 ENSDARG00000077176, ENSDARG00000114997 166 0.861 - 0.861 - - - - - - - zgc:174888 [Source:ZFIN;Acc:ZDB-GENE-030328-33]
85. lyz ENSDARG00000057789, ENSDARG00000109290, ENSDARG00000114098 5991 0.861 - 0.861 - - - - - - - lysozyme [Source:ZFIN;Acc:ZDB-GENE-020515-2]
86. HEXDC ENSDARG00000061216, ENSDARG00000116903 83 0.861 - 0.861 - - - - - - - hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing [Source:ZFIN;Acc:ZDB-GENE-060929-448]
87. JPH3 ENSDARG00000102204 283 0.861 - 0.861 - - - - - - - junctophilin 3 [Source:ZFIN;Acc:ZDB-GENE-060503-415]
88. si:ch211-214p16.2 ENSDARG00000094975 59 0.86 - 0.860 - - - - - - - si:ch211-214p16.2 [Source:NCBI gene;Acc:368902]
89. GRAMD2 GRAMD2 300 0.859 - 0.859 - - - - - - -
90. prr14 ENSDARG00000089232 495 0.859 - 0.859 - - - - - - - proline rich 14 [Source:ZFIN;Acc:ZDB-GENE-030131-3785]
91. mpp2b ENSDARG00000010957 415 0.858 - - - - - 0.858 - - - membrane protein, palmitoylated 2b (MAGUK p55 subfamily member 2) [Source:ZFIN;Acc:ZDB-GENE-040704-70]
92. FAXC FAXC 102 0.857 - - - - - 0.857 - - -
93. LPHN3 LPHN3 195 0.856 - - - - - - 0.856 - -
94. dopey1 438 0.855 - 0.855 - - - - - - - dopey family member 1, transcript variant X4
95. RUNDC3A RUNDC3A 204 0.853 - - - - - 0.853 - - -
96. Mar-03 Mar-03 44 0.851 - 0.851 - - - - - - -
97. SEC14L1 ENSDARG00000101792 4 0.851 - 0.851 - - - - - - - SEC14 like lipid binding 1 [Source:HGNC Symbol;Acc:HGNC:10698]
98. CABZ01030033.1 ENSDARG00000117613 3 0.851 - 0.851 - - - - - - -
99. KLHL29_1 KLHL29_1 158 0.851 - 0.851 - - - - - - -
100. zgc:112977 ENSDARG00000071741 109 0.851 - 0.851 - - - - - - - zgc:112977 [Source:ZFIN;Acc:ZDB-GENE-050327-98]

There are 1071 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA