Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for spcs3

Gene Name Gene ID Reads Annotation
spcs3 ENSDARG00000089976 2469 signal peptidase complex subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2206]










Genes with expression patterns similar to spcs3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. spcs3 ENSDARG00000089976 2469 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 signal peptidase complex subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2206]
2. metap1 ENSDARG00000033440, ENSDARG00000110334 6569 1.629 - - - - - 0.843 0.786 - - methionyl aminopeptidase 1 [Source:ZFIN;Acc:ZDB-GENE-050626-124]
3. clint1a ENSDARG00000025535 4965 1.569 - - - - - - 0.775 - 0.794 clathrin interactor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2590]
4. arfgap2 ENSDARG00000067601 6801 1.566 - 0.789 - - - - 0.777 - - ADP-ribosylation factor GTPase activating protein 2 [Source:ZFIN;Acc:ZDB-GENE-051120-177]
5. pofut1 ENSDARG00000008953 1157 1.535 - - - - - - 0.828 - 0.707 protein O-fucosyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040303-2]
6. nup88 ENSDARG00000003235, ENSDARG00000111135 1114 1.527 - 0.807 - - - - 0.720 - - nucleoporin 88 [Source:ZFIN;Acc:ZDB-GENE-050522-297]
7. phgdh ENSDARG00000001873 8325 1.522 - 0.796 - - - - - - 0.726 phosphoglycerate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030131-647]
8. axin2 ENSDARG00000100149 4223 1.514 - 0.792 - - - - - 0.722 - axin 2 (conductin, axil) [Source:ZFIN;Acc:ZDB-GENE-000403-2]
9. erlin1 ENSDARG00000021991 5664 1.497 - - - - - 0.738 0.759 - - ER lipid raft associated 1 [Source:ZFIN;Acc:ZDB-GENE-050327-13]
10. ctnna1 ENSDARG00000102441 7984 1.493 - 0.727 - - - - 0.766 - - catenin (cadherin-associated protein), alpha 1 [Source:ZFIN;Acc:ZDB-GENE-991207-24]
11. psen2 ENSDARG00000015540 832 1.49 - - - - - - 0.716 0.774 - presenilin 2 [Source:ZFIN;Acc:ZDB-GENE-000330-9]
12. mrps16 ENSDARG00000098972, ENSDARG00000115452 2085 1.479 - 0.757 - - - 0.722 - - - mitochondrial ribosomal protein S16 [Source:ZFIN;Acc:ZDB-GENE-041010-123]
13. emc2 ENSDARG00000003308, ENSDARG00000114541 7141 1.477 - 0.734 - - - 0.743 - - - ER membrane protein complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-040625-82]
14. csnk1g2a ENSDARG00000005458 2917 1.475 - - - - - - 0.762 - 0.713 casein kinase 1, gamma 2a [Source:ZFIN;Acc:ZDB-GENE-030131-6445]
15. gmfb ENSDARG00000028327 6522 1.475 - 0.740 - - - - 0.735 - - glia maturation factor, beta [Source:ZFIN;Acc:ZDB-GENE-040426-2114]
16. xpo1a ENSDARG00000078041 3544 1.474 - 0.711 - - - - 0.763 - - exportin 1 (CRM1 homolog, yeast) a [Source:ZFIN;Acc:ZDB-GENE-050309-201]
17. anxa4 ENSDARG00000036456 3332 1.473 - 0.726 - - - 0.747 - - - annexin A4 [Source:ZFIN;Acc:ZDB-GENE-030707-1]
18. rpl7l1 ENSDARG00000042864 3256 1.464 - - - - - - 0.733 0.731 - ribosomal protein L7-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-970]
19. xrn2 ENSDARG00000101900 2875 1.455 - - - - - - 0.738 - 0.717 5'-3' exoribonuclease 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2874]
20. aldh6a1 ENSDARG00000053485 7744 1.455 - 0.720 - - - 0.735 - - - aldehyde dehydrogenase 6 family, member A1 [Source:ZFIN;Acc:ZDB-GENE-030131-9192]
21. apaf1 ENSDARG00000021239 1185 1.447 - 0.721 - - - - 0.726 - - apoptotic peptidase activating factor 1 [Source:ZFIN;Acc:ZDB-GENE-000616-4]
22. paip2b ENSDARG00000008706 4255 1.442 - 0.729 - - - 0.713 - - - poly(A) binding protein interacting protein 2B [Source:ZFIN;Acc:ZDB-GENE-040426-1736]
23. eif3ja ENSDARG00000012603 6324 1.439 - 0.709 - - - - 0.730 - - eukaryotic translation initiation factor 3, subunit Ja [Source:ZFIN;Acc:ZDB-GENE-040426-1266]
24. emc6 ENSDARG00000035282 4981 1.439 - - - - - 0.718 - 0.721 - ER membrane protein complex subunit 6 [Source:ZFIN;Acc:ZDB-GENE-030131-9164]
25. PHTF1 PHTF1 1029 1.426 - - - - - - 0.708 - 0.718
26. C1H10orf12 C1H10orf12 1663 1.414 - 0.709 - - - - 0.705 - -
27. bzw1b ENSDARG00000099148 2972 1.414 - 0.712 - - - - 0.702 - - basic leucine zipper and W2 domains 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2881]
28. setd5 ENSDARG00000078576 1974 1.411 - - - - - 0.702 0.709 - - SET domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-080523-1]
29. hnrpkl ENSDARG00000007034 4660 0.893 - 0.893 - - - - - - - heterogeneous nuclear ribonucleoprotein K, like [Source:ZFIN;Acc:ZDB-GENE-040426-1923]
30. ctsf ENSDARG00000063095 4564 0.881 - - - - - - 0.881 - - cathepsin F [Source:ZFIN;Acc:ZDB-GENE-030131-9831]
31. ISCU ISCU 3648 0.863 - - - - - - 0.863 - -
32. snx9b ENSDARG00000069302, ENSDARG00000116107 5673 0.861 - 0.861 - - - - - - - sorting nexin 9b [Source:ZFIN;Acc:ZDB-GENE-031118-50]
33. TCEB3 2429 0.849 - 0.849 - - - - - - - transcription elongation factor B (SIII), polypeptide 3
34. midn ENSDARG00000018524 7559 0.844 - 0.844 - - - - - - - midnolin [Source:ZFIN;Acc:ZDB-GENE-030131-2433]
35. psmc2 ENSDARG00000020101 8095 0.843 - - - - - - 0.843 - - proteasome 26S subunit, ATPase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1327]
36. szrd1 ENSDARG00000056338, ENSDARG00000114005 2061 0.842 - - - - - - 0.842 - - SUZ RNA binding domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-050522-55]
37. smarcb1a ENSDARG00000033647, ENSDARG00000111561 3528 0.841 - - - - - - 0.841 - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1a [Source:ZFIN;Acc:ZDB-GENE-041114-5]
38. si:ch211-238e22.1 si:ch211-238e22.1 1032 0.84 - 0.840 - - - - - - -
39. rhoac ENSDARG00000116058 9256 0.839 - - - - - - 0.839 - - ras homolog gene family, member Ac [Source:ZFIN;Acc:ZDB-GENE-040426-2665]
40. SYMPK ENSDARG00000059553 1159 0.836 - 0.836 - - - - - - - symplekin [Source:ZFIN;Acc:ZDB-GENE-060526-361]
41. TSTD1 TSTD1 608 0.833 - 0.833 - - - - - - -
42. si:dkey-226l10.6 ENSDARG00000087483 1651 0.831 - - - - - - 0.831 - - si:dkey-226l10.6 [Source:ZFIN;Acc:ZDB-GENE-030131-1550]
43. tbca ENSDARG00000016754 6427 0.824 - - - - - - 0.824 - - tubulin cofactor a [Source:ZFIN;Acc:ZDB-GENE-040426-962]
44. ap1s1 ENSDARG00000056803 3854 0.823 - 0.823 - - - - - - - adaptor related protein complex 1 subunit sigma 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1119]
45. stk40 ENSDARG00000098135 2683 0.823 - - - - - - 0.823 - - serine/threonine kinase 40 [Source:ZFIN;Acc:ZDB-GENE-030131-4831]
46. nup188 ENSDARG00000030022 2398 0.822 - 0.822 - - - - - - - nucleoporin 188 [Source:ZFIN;Acc:ZDB-GENE-030131-7184]
47. si:dkeyp-120h9.1 ENSDARG00000020278 3120 0.822 - 0.822 - - - - - - - si:dkeyp-120h9.1 [Source:ZFIN;Acc:ZDB-GENE-070705-534]
48. usp9 ENSDARG00000013708 9057 0.821 - - - - - - 0.821 - - ubiquitin specific peptidase 9 [Source:ZFIN;Acc:ZDB-GENE-061019-1]
49. mapk3 ENSDARG00000070573 6842 0.82 - 0.820 - - - - - - - mitogen-activated protein kinase 3 [Source:ZFIN;Acc:ZDB-GENE-040121-1]
50. tmem30aa ENSDARG00000030236 2842 0.819 - - - - - - 0.819 - - transmembrane protein 30Aa [Source:ZFIN;Acc:ZDB-GENE-040704-26]
51. nfatc2ip ENSDARG00000011360 603 0.818 - - - - - - 0.818 - - nuclear factor of activated T cells 2 interacting protein [Source:ZFIN;Acc:ZDB-GENE-030131-9520]
52. arcn1b ENSDARG00000031214 4529 0.818 - - - - - - 0.818 - - archain 1b [Source:ZFIN;Acc:ZDB-GENE-040121-7]
53. stau1 ENSDARG00000044182, ENSDARG00000115476 6121 0.817 - 0.817 - - - - - - - staufen double-stranded RNA binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6372]
54. lrig2 ENSDARG00000078561, ENSDARG00000116750 2559 0.817 - 0.817 - - - - - - - leucine-rich repeats and immunoglobulin-like domains 2 [Source:ZFIN;Acc:ZDB-GENE-041111-75]
55. arf2 arf2 12369 0.817 - 0.817 - - - - - - -
56. tmem176l.1 ENSDARG00000099491 860 0.816 - 0.816 - - - - - - - transmembrane protein 176l.1 [Source:ZFIN;Acc:ZDB-GENE-080829-11]
57. mcrs1 ENSDARG00000020840 3232 0.816 - - - - - - 0.816 - - microspherule protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2434]
58. anp32a ENSDARG00000006487 28249 0.815 - - - - - - 0.815 - - acidic (leucine-rich) nuclear phosphoprotein 32 family, member A [Source:ZFIN;Acc:ZDB-GENE-030131-7850]
59. usf1 ENSDARG00000041689 1619 0.815 - 0.815 - - - - - - - upstream transcription factor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1072]
60. SMAD4 SMAD4 3233 0.814 - - - - - - 0.814 - -
61. cnih4 ENSDARG00000087759 3937 0.813 - - - - - - 0.813 - - cornichon family AMPA receptor auxiliary protein 4 [Source:ZFIN;Acc:ZDB-GENE-030131-868]
62. gpx1a ENSDARG00000018146, ENSDARG00000114736 4652 0.813 - - - - - - 0.813 - - glutathione peroxidase 1a [Source:ZFIN;Acc:ZDB-GENE-030410-1]
63. mgst3 mgst3 3982 0.813 - - - - - - 0.813 - -
64. fdx1 ENSDARG00000056410, ENSDARG00000115831 3463 0.812 - - - - - - 0.812 - - ferredoxin 1 [Source:ZFIN;Acc:ZDB-GENE-071015-2]
65. wdr82 ENSDARG00000014083 3159 0.812 - 0.812 - - - - - - - WD repeat domain 82 [Source:ZFIN;Acc:ZDB-GENE-030131-333]
66. csnk1a1_1 ENSDARG00000052674, ENSDARG00000112077 5195 0.811 - - - - - - 0.811 - - casein kinase 1, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-020419-19]
67. COLGALT1 ENSDARG00000073974 5069 0.81 - - - - - - 0.810 - - collagen beta(1-O)galactosyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-070720-6]
68. srsf9 ENSDARG00000008097 2405 0.81 - - - - - - 0.810 - - serine/arginine-rich splicing factor 9 [Source:ZFIN;Acc:ZDB-GENE-040426-2397]
69. tmed9 ENSDARG00000004261 10013 0.808 - - - - - - 0.808 - - transmembrane p24 trafficking protein 9 [Source:ZFIN;Acc:ZDB-GENE-050417-434]
70. nck1b ENSDARG00000075369 1596 0.808 - 0.808 - - - - - - - NCK adaptor protein 1b [Source:ZFIN;Acc:ZDB-GENE-090317-1]
71. caprin1a ENSDARG00000009346, ENSDARG00000112212 9675 0.808 - 0.808 - - - - - - - cell cycle associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-040801-226]
72. huwe1 ENSDARG00000016782 6493 0.807 - - - - - - 0.807 - - HECT, UBA and WWE domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-081104-387]
73. SYDE2 ENSDARG00000099479 1891 0.806 - - - - - - 0.806 - - synapse defective Rho GTPase homolog 2 [Source:HGNC Symbol;Acc:HGNC:25841]
74. CUTA CUTA 1149 0.805 - - - - - - - 0.805 -
75. col6a2 ENSDARG00000061436 5063 0.805 - 0.805 - - - - - - - collagen, type VI, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-070501-7]
76. fcho2 ENSDARG00000035389, ENSDARG00000112245 1996 0.804 - - - - - - 0.804 - - FCH domain only 2 [Source:ZFIN;Acc:ZDB-GENE-050522-228]
77. slc40a1 ENSDARG00000000241 4882 0.803 - 0.803 - - - - - - - solute carrier family 40 (iron-regulated transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-000511-8]
78. rimkla ENSDARG00000016830, ENSDARG00000112193 4111 0.803 - 0.803 - - - - - - - ribosomal modification protein rimK-like family member A [Source:ZFIN;Acc:ZDB-GENE-040912-20]
79. rbm25 rbm25 3629 0.803 - 0.803 - - - - - - -
80. exosc1 ENSDARG00000059841 6895 0.802 - 0.802 - - - - - - - exosome component 1 [Source:ZFIN;Acc:ZDB-GENE-080926-3]
81. slc30a7 ENSDARG00000019998, ENSDARG00000112372 2967 0.801 - - - - - - 0.801 - - solute carrier family 30 (zinc transporter), member 7 [Source:ZFIN;Acc:ZDB-GENE-030131-5650]
82. sdc4 ENSDARG00000059906 10105 0.801 - 0.801 - - - - - - - syndecan 4 [Source:ZFIN;Acc:ZDB-GENE-061111-1]
83. lats2 ENSDARG00000078864, ENSDARG00000115103 2063 0.8 - 0.800 - - - - - - - large tumor suppressor kinase 2 [Source:ZFIN;Acc:ZDB-GENE-050119-6]
84. hnrnpk ENSDARG00000018914 8841 0.8 - - - - - - 0.800 - - heterogeneous nuclear ribonucleoprotein K [Source:ZFIN;Acc:ZDB-GENE-040426-1926]
85. mycn ENSDARG00000006837 1616 0.799 - 0.799 - - - - - - - MYCN proto-oncogene, bHLH transcription factor [Source:ZFIN;Acc:ZDB-GENE-020711-1]
86. hoxa9b ENSDARG00000056819 3081 0.799 - 0.799 - - - - - - - homeobox A9b [Source:ZFIN;Acc:ZDB-GENE-000823-2]
87. vps28 ENSDARG00000103203 4991 0.798 - - - - - - 0.798 - - vacuolar protein sorting 28 (yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-1527]
88. ap2b1 ENSDARG00000035152 2912 0.797 - - - - - - 0.797 - - adaptor related protein complex 2 subunit beta 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6564]
89. maff ENSDARG00000028957, ENSDARG00000111050 1809 0.797 - 0.797 - - - - - - - v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog F [Source:ZFIN;Acc:ZDB-GENE-040426-1280]
90. psenen ENSDARG00000068698 2777 0.797 - 0.797 - - - - - - - presenilin enhancer, gamma-secretase subunit [Source:ZFIN;Acc:ZDB-GENE-040218-1]
91. fam65a 731 0.795 - 0.795 - - - - - - - family with sequence similarity 65, member A, transcript variant X5
92. ptgs2b ENSDARG00000010276 692 0.795 - 0.795 - - - - - - - prostaglandin-endoperoxide synthase 2b [Source:ZFIN;Acc:ZDB-GENE-041014-323]
93. si:ch211-288g17.3 ENSDARG00000070959 2425 0.795 - 0.795 - - - - - - - si:ch211-288g17.3 [Source:ZFIN;Acc:ZDB-GENE-030131-461]
94. hirip3 ENSDARG00000027749, ENSDARG00000115688 5875 0.794 - - - - - - - 0.794 - HIRA interacting protein 3 [Source:ZFIN;Acc:ZDB-GENE-030131-5753]
95. esco2 ENSDARG00000014685 1971 0.794 - - - - - - - 0.794 - establishment of sister chromatid cohesion N-acetyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-050913-156]
96. rnf41 ENSDARG00000036831, ENSDARG00000111636 872 0.794 - 0.794 - - - - - - - ring finger protein 41 [Source:ZFIN;Acc:ZDB-GENE-040426-2920]
97. chd9 ENSDARG00000074498, ENSDARG00000112964 2603 0.794 - 0.794 - - - - - - - chromodomain helicase DNA binding protein 9 [Source:ZFIN;Acc:ZDB-GENE-030131-497]
98. clptm1l ENSDARG00000021048 1234 0.793 - - - - - - - - 0.793 CLPTM1-like [Source:ZFIN;Acc:ZDB-GENE-040718-75]
99. si:ch73-46j18.5 ENSDARG00000092467 6002 0.793 - 0.793 - - - - - - - si:ch73-46j18.5 [Source:ZFIN;Acc:ZDB-GENE-030131-7892]
100. slc37a2 ENSDARG00000023394 3997 0.793 - - - - - 0.793 - - - solute carrier family 37 (glucose-6-phosphate transporter), member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1949]

There are 581 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA