Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for sox9b

Gene Name Gene ID Reads Annotation
sox9b ENSDARG00000043923 5375 SRY (sex determining region Y)-box 9b [Source:ZFIN;Acc:ZDB-GENE-001103-2]










Genes with expression patterns similar to sox9b

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. sox9b ENSDARG00000043923 5375 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SRY (sex determining region Y)-box 9b [Source:ZFIN;Acc:ZDB-GENE-001103-2]
2. slc4a2b ENSDARG00000052330 1900 1.923 - - 0.951 - 0.972 - - - - solute carrier family 4 (anion exchanger), member 2b [Source:ZFIN;Acc:ZDB-GENE-030429-14]
3. map2k6 ENSDARG00000099184 8741 1.84 - - 0.852 - - - 0.988 - - mitogen-activated protein kinase kinase 6 [Source:ZFIN;Acc:ZDB-GENE-010202-3]
4. arl6ip1 ENSDARG00000054578, ENSDARG00000112340 11714 1.809 - - 0.878 - 0.931 - - - - ADP-ribosylation factor-like 6 interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1087]
5. errfi1 errfi1 979 1.795 - 0.821 - - 0.974 - - - -
6. synm ENSDARG00000062350, ENSDARG00000113948, ENSDARG00000114029 483 1.78 - 0.807 - - 0.973 - - - - synemin, intermediate filament protein [Source:ZFIN;Acc:ZDB-GENE-050419-81]
7. ier5l ENSDARG00000054906, ENSDARG00000110793, ENSDARG00000114072 4216 1.779 - - - - - - 0.989 - 0.790 immediate early response 5-like [Source:ZFIN;Acc:ZDB-GENE-030131-5134]
8. hdac1 ENSDARG00000015427 19804 1.771 - - - - - - 0.971 - 0.800 histone deacetylase 1 [Source:ZFIN;Acc:ZDB-GENE-020419-32]
9. tardbpl ENSDARG00000004452, ENSDARG00000116205 12160 1.762 - - - - 0.963 - - 0.799 - TAR DNA binding protein, like [Source:ZFIN;Acc:ZDB-GENE-031030-1]
10. hint1 ENSDARG00000103824, ENSDARG00000110789 8302 1.746 0.757 - - - - - 0.989 - - histidine triad nucleotide binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040927-8]
11. zgc:110329 ENSDARG00000035532, ENSDARG00000110423 2229 1.738 - - - - - - 0.991 - 0.747 zgc:110329 [Source:ZFIN;Acc:ZDB-GENE-050417-334]
12. wdr33 ENSDARG00000018272 4076 1.737 - - - - - - 0.990 - 0.747 WD repeat domain 33 [Source:ZFIN;Acc:ZDB-GENE-040924-3]
13. suz12a ENSDARG00000070256 2229 1.736 - - 0.950 - - 0.786 - - - SUZ12, polycomb repressive complex 2 subunit a [Source:ZFIN;Acc:ZDB-GENE-040801-36]
14. zgc:101846 15202 1.733 - - 0.917 - - - - - 0.816 zgc:101846
15. psmb6 ENSDARG00000002240 8015 1.729 - - - - - - 0.989 - 0.740 proteasome subunit beta 6 [Source:ZFIN;Acc:ZDB-GENE-990415-216]
16. inab ENSDARG00000053248 3239 1.728 - - - - - - 0.991 - 0.737 internexin neuronal intermediate filament protein, alpha b [Source:ZFIN;Acc:ZDB-GENE-990415-83]
17. pds5b ENSDARG00000098897 1732 1.724 - 0.748 - - 0.976 - - - - PDS5 cohesin associated factor B [Source:ZFIN;Acc:ZDB-GENE-091217-2]
18. snrpa ENSDARG00000018890 4593 1.719 - - - - 0.929 - - - 0.790 small nuclear ribonucleoprotein polypeptide A [Source:ZFIN;Acc:ZDB-GENE-030131-2841]
19. puf60b ENSDARG00000001241 13827 1.716 - - - - - - 0.984 - 0.732 poly-U binding splicing factor b [Source:ZFIN;Acc:ZDB-GENE-040625-116]
20. ube2d1b ENSDARG00000038576 5971 1.715 - - - - - - 0.985 - 0.730 ubiquitin-conjugating enzyme E2D 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2735]
21. snrpc ENSDARG00000009871 9567 1.712 - - - - 0.887 - - - 0.825 small nuclear ribonucleoprotein polypeptide C [Source:ZFIN;Acc:ZDB-GENE-020419-26]
22. DENND4B ENSDARG00000102914 1001 1.702 - - - - 0.967 0.735 - - - DENN/MADD domain containing 4B [Source:ZFIN;Acc:ZDB-GENE-130530-684]
23. loxl3b ENSDARG00000039563 1657 1.701 - 0.710 - - - - 0.991 - - lysyl oxidase-like 3b [Source:ZFIN;Acc:ZDB-GENE-030131-8210]
24. nol12 ENSDARG00000038027 2288 1.696 - 0.755 - - 0.941 - - - - nucleolar protein 12 [Source:ZFIN;Acc:ZDB-GENE-040426-1035]
25. dnaja1l dnaja1l 1536 1.696 - 0.705 - - - - 0.991 - -
26. prpf40a ENSDARG00000058467 6565 1.695 - - 0.863 - - - - - 0.832 PRP40 pre-mRNA processing factor 40 homolog A [Source:ZFIN;Acc:ZDB-GENE-030131-274]
27. onecut1 ENSDARG00000007982, ENSDARG00000112251 6307 1.686 - - - - 0.969 0.717 - - - one cut homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1469]
28. calm2a ENSDARG00000031427, ENSDARG00000111871 43643 1.682 - - 0.759 - - - 0.923 - - calmodulin 2a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030804-3]
29. smek1 ENSDARG00000042187 3509 1.675 - - - - 0.961 - - - 0.714 SMEK homolog 1, suppressor of mek1 (Dictyostelium) [Source:ZFIN;Acc:ZDB-GENE-030131-3958]
30. gnl3 ENSDARG00000006219 3854 1.67 - 0.734 0.936 - - - - - - guanine nucleotide binding protein-like 3 (nucleolar) [Source:ZFIN;Acc:ZDB-GENE-030131-616]
31. ache ENSDARG00000031796 1985 1.666 - 0.871 - - - 0.795 - - - acetylcholinesterase [Source:ZFIN;Acc:ZDB-GENE-010906-1]
32. pgam5 ENSDARG00000035608 4044 1.662 0.712 - 0.950 - - - - - - PGAM family member 5, serine/threonine protein phosphatase, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-030131-683]
33. unc119b ENSDARG00000044362 1528 1.658 - - 0.911 - - - - - 0.747 unc-119 homolog b (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-050201-2]
34. rpl28 ENSDARG00000005791 61993 1.658 0.781 - - - - - 0.877 - - ribosomal protein L28 [Source:ZFIN;Acc:ZDB-GENE-040930-10]
35. psma6b ENSDARG00000013966 4410 1.653 0.711 - 0.942 - - - - - - proteasome subunit alpha 6b [Source:ZFIN;Acc:ZDB-GENE-040718-329]
36. kpnb3 ENSDARG00000040245 7967 1.65 - - 0.927 - 0.723 - - - - karyopherin (importin) beta 3 [Source:ZFIN;Acc:ZDB-GENE-030424-2]
37. cdk2 ENSDARG00000026577 2835 1.645 - - 0.944 - - - - - 0.701 cyclin-dependent kinase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2741]
38. lsm4 ENSDARG00000023852 6083 1.639 - - - - 0.931 - - - 0.708 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:ZFIN;Acc:ZDB-GENE-040426-1652]
39. smarca5 ENSDARG00000052348 15433 1.635 - - - - - 0.807 - - 0.828 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 [Source:ZFIN;Acc:ZDB-GENE-021125-1]
40. rab11a ENSDARG00000041450, ENSDARG00000109465 7418 1.618 - - - - 0.917 - - - 0.701 RAB11a, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-041114-53]
41. stac3 ENSDARG00000098883 1765 1.617 0.742 0.875 - - - - - - - SH3 and cysteine rich domain 3 [Source:ZFIN;Acc:ZDB-GENE-040801-248]
42. atp5a1 48823 1.598 - - 0.798 - - - 0.800 - - ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle
43. pou3f1 ENSDARG00000009823, ENSDARG00000112302 7037 1.583 - - - - - 0.755 - - 0.828 POU class 3 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-372]
44. insm1b ENSDARG00000053301 2032 1.582 - - - - - 0.774 - - 0.808 insulinoma-associated 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2602]
45. col18a1 col18a1 20555 1.582 - - 0.830 - 0.752 - - - -
46. syt11b ENSDARG00000056105 578 1.58 - - - - - 0.872 - - 0.708 synaptotagmin XIb [Source:ZFIN;Acc:ZDB-GENE-090601-7]
47. si:ch211-152c2.3 ENSDARG00000045898 3448 1.575 0.864 - - - - 0.711 - - - si:ch211-152c2.3 [Source:ZFIN;Acc:ZDB-GENE-030131-9914]
48. rassf8b ENSDARG00000045485 1568 1.572 0.746 0.826 - - - - - - - Ras association (RalGDS/AF-6) domain family (N-terminal) member 8b [Source:ZFIN;Acc:ZDB-GENE-040426-1338]
49. nono ENSDARG00000020482, ENSDARG00000115783 12482 1.564 - - - 0.758 - - - - 0.806 non-POU domain containing, octamer-binding [Source:ZFIN;Acc:ZDB-GENE-030131-713]
50. hnrnpa0b ENSDARG00000036162, ENSDARG00000112653 27740 1.56 - - - - 0.761 - - - 0.799 heterogeneous nuclear ribonucleoprotein A0b [Source:ZFIN;Acc:ZDB-GENE-030131-6154]
51. SNRPG ENSDARG00000099667 18697 1.555 - - 0.743 - - - - - 0.812 small nuclear ribonucleoprotein polypeptide G [Source:ZFIN;Acc:ZDB-GENE-040912-105]
52. TAF15 ENSDARG00000070019 5102 1.554 - - - - - - - 0.722 0.832 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-061215-102]
53. git2a ENSDARG00000061915 884 1.543 - 0.791 - - - 0.752 - - - G protein-coupled receptor kinase interacting ArfGAP 2a [Source:ZFIN;Acc:ZDB-GENE-060526-267]
54. tmem35 ENSDARG00000052567 5685 1.539 - - - - - 0.721 - - 0.818 transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
55. ttk ENSDARG00000041361 3911 1.536 - - - 0.726 0.810 - - - - ttk protein kinase [Source:ZFIN;Acc:ZDB-GENE-030123-1]
56. rbm25 rbm25 3629 1.536 - - - - - 0.720 - - 0.816
57. mybpc2b ENSDARG00000021265 9618 1.533 0.756 0.777 - - - - - - - myosin binding protein C, fast type b [Source:ZFIN;Acc:ZDB-GENE-050320-80]
58. peli1b ENSDARG00000044083, ENSDARG00000112797 3801 1.53 - - - 0.716 - - - - 0.814 pellino E3 ubiquitin protein ligase 1b [Source:ZFIN;Acc:ZDB-GENE-061027-372]
59. hnrnpm ENSDARG00000061735 19428 1.528 - - 0.803 - - - - - 0.725 heterogeneous nuclear ribonucleoprotein M [Source:ZFIN;Acc:ZDB-GENE-030131-6898]
60. ncl ENSDARG00000002710 16951 1.527 - - - - - - - 0.766 0.761 nucleolin [Source:ZFIN;Acc:ZDB-GENE-030131-6986]
61. nhlh2 ENSDARG00000025495 1860 1.526 - - - - - 0.815 - - 0.711 nescient helix loop helix 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1809]
62. myo16 ENSDARG00000078582 714 1.523 - 0.782 - - - 0.741 - - - myosin XVI [Source:ZFIN;Acc:ZDB-GENE-070912-470]
63. ywhag2 ENSDARG00000071658, ENSDARG00000116741 3326 1.522 0.734 0.788 - - - - - - - 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-061023-2]
64. ipo7 ENSDARG00000035751 7095 1.519 - - - - 0.812 - - - 0.707 importin 7 [Source:ZFIN;Acc:ZDB-GENE-030131-458]
65. auts2 auts2 1538 1.518 - 0.789 - - - 0.729 - - -
66. TNRC6C_2 TNRC6C_2 2444 1.518 - - - 0.774 - 0.744 - - -
67. rps29 ENSDARG00000041232 71334 1.517 0.784 - 0.733 - - - - - - ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
68. smyd2b ENSDARG00000005629 8181 1.515 0.726 0.789 - - - - - - - SET and MYND domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-041001-201]
69. tnc ENSDARG00000021948, ENSDARG00000113518 12162 1.511 0.711 0.800 - - - - - - - tenascin C [Source:ZFIN;Acc:ZDB-GENE-980526-104]
70. pygma ENSDARG00000055518 15972 1.509 0.712 0.797 - - - - - - - phosphorylase, glycogen, muscle A [Source:ZFIN;Acc:ZDB-GENE-050522-482]
71. palm1a ENSDARG00000026882, ENSDARG00000115356 3425 1.508 0.719 0.789 - - - - - - - paralemmin 1a [Source:ZFIN;Acc:ZDB-GENE-050417-409]
72. zgc:92907 ENSDARG00000011026 986 1.508 0.723 0.785 - - - - - - - zgc:92907 [Source:ZFIN;Acc:ZDB-GENE-040718-161]
73. pcdh19 ENSDARG00000034344 2378 1.504 - - - - - 0.761 - - 0.743 protocadherin 19 [Source:ZFIN;Acc:ZDB-GENE-030131-4218]
74. trim55a ENSDARG00000029596 2858 1.503 0.716 0.787 - - - - - - - tripartite motif containing 55a [Source:ZFIN;Acc:ZDB-GENE-040718-50]
75. CABZ01071911.2 CABZ01071911.2 64 1.5 - 0.772 - - - 0.728 - - -
76. camk2d2 ENSDARG00000014273 2840 1.499 - 0.774 - - - 0.725 - - - calcium/calmodulin-dependent protein kinase (CaM kinase) II delta 2 [Source:ZFIN;Acc:ZDB-GENE-040718-277]
77. gap43 ENSDARG00000099744 4114 1.498 - - - - - - - 0.716 0.782 growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
78. hnrpl 6412 1.498 - - - - - 0.713 - - 0.785 heterogeneous nuclear ribonucleoprotein L, transcript variant X1
79. rpl32 ENSDARG00000054818, ENSDARG00000110237, ENSDARG00000115707 37036 1.493 0.708 - - - 0.785 - - - - ribosomal protein L32 [Source:ZFIN;Acc:ZDB-GENE-060331-105]
80. gpr98 gpr98 717 1.49 - - - - - 0.772 - - 0.718
81. SPTBN4_1 ENSDARG00000092624 473 1.488 - - - - - 0.755 - - 0.733 spectrin beta, non-erythrocytic 4 [Source:HGNC Symbol;Acc:HGNC:14896]
82. hspb11 ENSDARG00000002204 879 1.487 0.736 0.751 - - - - - - - heat shock protein, alpha-crystallin-related, b11 [Source:ZFIN;Acc:ZDB-GENE-030131-5148]
83. cx43.4 ENSDARG00000007099 16369 1.48 0.735 - - - - 0.745 - - - connexin 43.4 [Source:ZFIN;Acc:ZDB-GENE-990415-38]
84. ehbp1l1b ENSDARG00000079895 559 1.475 0.754 0.721 - - - - - - - EH domain binding protein 1-like 1b [Source:ZFIN;Acc:ZDB-GENE-091204-238]
85. gdf11 ENSDARG00000044924 534 1.471 - - - - - 0.760 - - 0.711 growth differentiation factor 11 [Source:ZFIN;Acc:ZDB-GENE-040427-2]
86. nkx6.1 ENSDARG00000022569 3779 1.469 - 0.718 - - - 0.751 - - - NK6 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040718-178]
87. elavl4 ENSDARG00000045639 998 1.467 - - - - - 0.718 - - 0.749 ELAV like neuron-specific RNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-990415-246]
88. tmem198a ENSDARG00000042115 1694 1.467 - - - - - 0.711 - - 0.756 transmembrane protein 198a [Source:ZFIN;Acc:ZDB-GENE-070912-716]
89. kpna2 ENSDARG00000038066 7954 1.466 - - - 0.724 - - - - 0.742 karyopherin alpha 2 (RAG cohort 1, importin alpha 1) [Source:ZFIN;Acc:ZDB-GENE-040718-22]
90. her4.3 ENSDARG00000070770 613 1.463 - - - - - 0.724 - - 0.739 hairy-related 4, tandem duplicate 3 [Source:ZFIN;Acc:ZDB-GENE-081030-7]
91. ascl1a ENSDARG00000038386 1290 1.461 - - - - - 0.757 - - 0.704 achaete-scute family bHLH transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-980526-90]
92. ctnnd2b ENSDARG00000003779 964 1.46 - - - - - 0.735 - - 0.725 catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]
93. tma7 ENSDARG00000071670 13372 1.458 0.727 - - - - - - - 0.731 translation machinery associated 7 homolog [Source:ZFIN;Acc:ZDB-GENE-061027-176]
94. CR847973.1 ENSDARG00000115516 8754 1.455 0.720 0.735 - - - - - - -
95. casc4 ENSDARG00000074490 2019 1.454 - 0.753 - - - 0.701 - - - cancer susceptibility candidate 4 [Source:ZFIN;Acc:ZDB-GENE-091130-1]
96. si:ch211-241o7.5 si:ch211-241o7.5 1387 1.452 0.703 0.749 - - - - - - -
97. SNORA74 SNORA74 284 1.446 - 0.713 - - - 0.733 - - -
98. vamp2 ENSDARG00000056877 2158 1.441 - - - - - 0.704 - - 0.737 vesicle-associated membrane protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8225]
99. cdh2 ENSDARG00000018693, ENSDARG00000117201 9869 1.441 - - - - - - - 0.705 0.736 cadherin 2, type 1, N-cadherin (neuronal) [Source:ZFIN;Acc:ZDB-GENE-990415-171]
100. pou3f3a ENSDARG00000042032 2835 1.439 - - - - - 0.725 - - 0.714 POU class 3 homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-980526-220]

There are 1476 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA