Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for sox5

Gene Name Gene ID Reads Annotation
sox5 ENSDARG00000011582 3632 SRY (sex determining region Y)-box 5 [Source:ZFIN;Acc:ZDB-GENE-000607-13]










Genes with expression patterns similar to sox5

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. sox5 ENSDARG00000011582 3632 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SRY (sex determining region Y)-box 5 [Source:ZFIN;Acc:ZDB-GENE-000607-13]
2. loxl2a ENSDARG00000044010 1906 2.328 0.737 - - - - 0.722 - - 0.869 lysyl oxidase-like 2a [Source:ZFIN;Acc:ZDB-GENE-070818-1]
3. ndufa6 ENSDARG00000038028 2653 2.291 - 0.711 - - - 0.776 - - 0.804 NADH:ubiquinone oxidoreductase subunit A6 [Source:ZFIN;Acc:ZDB-GENE-040426-1124]
4. tm9sf4 ENSDARG00000002536 1684 1.878 - - - - 0.970 - - - 0.908 transmembrane 9 superfamily protein member 4 [Source:ZFIN;Acc:ZDB-GENE-040426-1575]
5. kcnq5a ENSDARG00000069954 492 1.868 - - - - 0.946 - - - 0.922 potassium voltage-gated channel, KQT-like subfamily, member 5a [Source:ZFIN;Acc:ZDB-GENE-090312-185]
6. ifrd1 ENSDARG00000068708 2858 1.868 - - - - 0.938 - - - 0.930 interferon-related developmental regulator 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6132]
7. cwc22 ENSDARG00000014008 2385 1.835 - - - - 0.929 - - - 0.906 CWC22 spliceosome-associated protein homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060929-452]
8. ARID3A ENSDARG00000070843 1613 1.815 - - - - 0.940 - - - 0.875 AT rich interactive domain 3A (BRIGHT-like) [Source:ZFIN;Acc:ZDB-GENE-140106-97]
9. 5S_rRNA_21 5S_rRNA_21 1323 1.785 - - - - 0.942 - - - 0.843
10. nup62l ENSDARG00000020527, ENSDARG00000111836, ENSDARG00000112620 3763 1.729 - - - - 0.915 - - - 0.814 nucleoporin 62 like [Source:ZFIN;Acc:ZDB-GENE-030131-8491]
11. memo1 ENSDARG00000010823 1681 1.724 - 0.803 - - - - - - 0.921 mediator of cell motility 1 [Source:ZFIN;Acc:ZDB-GENE-030131-5571]
12. itga5 ENSDARG00000006353 1876 1.72 - 0.780 - - 0.940 - - - - integrin, alpha 5 (fibronectin receptor, alpha polypeptide) [Source:ZFIN;Acc:ZDB-GENE-031116-52]
13. csgalnact2 ENSDARG00000061400 741 1.718 - - - - - 0.792 - - 0.926 chondroitin sulfate N-acetylgalactosaminyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5186]
14. cltcb ENSDARG00000090716 5544 1.715 - - - - 0.917 - - - 0.798 clathrin, heavy chain b (Hc) [Source:ZFIN;Acc:ZDB-GENE-050227-12]
15. birc2 ENSDARG00000044619, ENSDARG00000117094 1376 1.706 - 0.829 - - - - - - 0.877 baculoviral IAP repeat containing 2 [Source:ZFIN;Acc:ZDB-GENE-030825-6]
16. stau1 ENSDARG00000044182, ENSDARG00000115476 6121 1.695 - - - - 0.902 - - - 0.793 staufen double-stranded RNA binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6372]
17. snrpe ENSDARG00000033175 7462 1.684 - 0.752 - - 0.932 - - - - small nuclear ribonucleoprotein polypeptide E [Source:ZFIN;Acc:ZDB-GENE-040426-1112]
18. acvr2aa ENSDARG00000011188 1454 1.682 - 0.737 - - 0.945 - - - - activin A receptor type 2Aa [Source:ZFIN;Acc:ZDB-GENE-980526-227]
19. ntn1a ENSDARG00000105112, ENSDARG00000111684 2553 1.677 0.755 - - - - - - - 0.922 netrin 1a [Source:ZFIN;Acc:ZDB-GENE-990415-169]
20. rbm45 ENSDARG00000063731 504 1.663 - 0.728 - - - - - - 0.935 RNA binding motif protein 45 [Source:ZFIN;Acc:ZDB-GENE-070122-4]
21. caly ENSDARG00000036008 1002 1.661 - 0.751 - - - - - - 0.910 calcyon neuron-specific vesicular protein [Source:ZFIN;Acc:ZDB-GENE-090313-405]
22. NDUFA3 ENSDARG00000041400 7939 1.648 - - - - 0.903 0.745 - - - NADH:ubiquinone oxidoreductase subunit A3 [Source:ZFIN;Acc:ZDB-GENE-040801-18]
23. mafg2 mafg2 1041 1.648 0.706 - - - - - - - 0.942
24. PHB2 PHB2 3755 1.634 0.781 - - - - - - - 0.853
25. smyd1b ENSDARG00000091253 4964 1.633 0.769 - - - 0.864 - - - - SET and MYND domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-060522-1]
26. MZT1 ENSDARG00000096668 2514 1.629 - 0.854 - - - - - - 0.775 mitotic spindle organizing protein 1 [Source:HGNC Symbol;Acc:HGNC:33830]
27. nfkbiab ENSDARG00000007693 1345 1.627 - - - - - - 0.754 - 0.873 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-1819]
28. CABZ01059390.1 CABZ01059390.1 4340 1.615 - - - - 0.896 - - - 0.719
29. loxl3b ENSDARG00000039563 1657 1.611 0.803 0.808 - - - - - - - lysyl oxidase-like 3b [Source:ZFIN;Acc:ZDB-GENE-030131-8210]
30. ankhd1 ENSDARG00000077860 5510 1.611 - - - - - - 0.723 - 0.888 ankyrin repeat and KH domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-090421-1]
31. pbxip1b ENSDARG00000011824 3726 1.611 0.788 - - - - - - - 0.823 pre-B-cell leukemia homeobox interacting protein 1b [Source:ZFIN;Acc:ZDB-GENE-070112-2032]
32. ttc14 ENSDARG00000013845 1192 1.606 - - - - - - 0.718 - 0.888 tetratricopeptide repeat domain 14 [Source:ZFIN;Acc:ZDB-GENE-050327-26]
33. ell ENSDARG00000000568 1404 1.605 - - - - - - 0.714 - 0.891 elongation factor RNA polymerase II [Source:ZFIN;Acc:ZDB-GENE-030131-3946]
34. stard8 ENSDARG00000014003, ENSDARG00000114410 1237 1.596 - - - - - - 0.713 - 0.883 StAR-related lipid transfer (START) domain containing 8 [Source:ZFIN;Acc:ZDB-GENE-030131-9447]
35. TNRC6B ENSDARG00000074161 2464 1.594 - 0.722 - - - - - - 0.872 trinucleotide repeat containing 6b [Source:ZFIN;Acc:ZDB-GENE-030131-13]
36. PAX7 PAX7 1658 1.592 - 0.785 - - - - - - 0.807
37. EIF1B ENSDARG00000029445 5034 1.59 - - - - - 0.723 - - 0.867 eukaryotic translation initiation factor 1B [Source:HGNC Symbol;Acc:HGNC:30792]
38. ipo7 ENSDARG00000035751 7095 1.584 - 0.762 - - 0.822 - - - - importin 7 [Source:ZFIN;Acc:ZDB-GENE-030131-458]
39. pbdc1 ENSDARG00000057299, ENSDARG00000111256, ENSDARG00000112544 5960 1.576 - - - - 0.867 - 0.709 - - polysaccharide biosynthesis domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040718-459]
40. wu:fb55g09 6015 1.575 - 0.742 - - - - 0.833 - - wu:fb55g09
41. BX511013.1 ENSDARG00000112403 1018 1.564 - - - - - - 0.704 - 0.860 uncharacterized LOC103908633 [Source:NCBI gene;Acc:103908633]
42. BDP1 BDP1 2514 1.544 - - - - - 0.764 0.780 - -
43. loxl5b ENSDARG00000076904 468 1.541 0.801 - - - - 0.740 - - - lysyl oxidase-like 5b [Source:ZFIN;Acc:ZDB-GENE-070818-3]
44. sulf1 ENSDARG00000038428 2748 1.539 0.734 0.805 - - - - - - - sulfatase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9242]
45. dnajc19 ENSDARG00000044420 1756 1.539 - - - - - - 0.709 - 0.830 DnaJ (Hsp40) homolog, subfamily C, member 19 [Source:ZFIN;Acc:ZDB-GENE-040426-1730]
46. nrp1a ENSDARG00000102153 4154 1.533 - - - - 0.793 - - - 0.740 neuropilin 1a [Source:ZFIN;Acc:ZDB-GENE-030519-2]
47. abi2b ENSDARG00000014875 2259 1.53 - - - - - - - 0.720 0.810 abl-interactor 2b [Source:ZFIN;Acc:ZDB-GENE-060519-5]
48. BX248510.1 ENSDARG00000075422 1449 1.528 0.721 0.807 - - - - - - - mitochondrial ribosomal protein L49 [Source:NCBI gene;Acc:558658]
49. arfgap3 ENSDARG00000097583 1087 1.515 0.764 - - - - 0.751 - - - ADP-ribosylation factor GTPase activating protein 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1]
50. C7H16orf87 C7H16orf87 5197 1.503 - 0.784 - - - - - - 0.719
51. pkn2 ENSDARG00000101983 1211 1.5 - - - - - 0.794 0.706 - - protein kinase N2 [Source:ZFIN;Acc:ZDB-GENE-061207-42]
52. serpinh1b ENSDARG00000019949 11693 1.488 0.712 - - - - - 0.776 - - serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b [Source:ZFIN;Acc:ZDB-GENE-990415-93]
53. psmd1 ENSDARG00000003189 4373 1.488 - 0.779 - - - - - - 0.709 proteasome 26S subunit, non-ATPase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-810]
54. stau2 ENSDARG00000026801, ENSDARG00000112268 5161 1.487 - 0.748 - - - - 0.739 - - staufen double-stranded RNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-687]
55. zgc:153662 zgc:153662 4604 1.486 0.750 0.736 - - - - - - -
56. pomp ENSDARG00000032296 4439 1.482 - 0.732 - - - - - - 0.750 proteasome maturation protein [Source:ZFIN;Acc:ZDB-GENE-040801-10]
57. RANBP3 RANBP3 2513 1.477 - 0.737 - - - - - - 0.740
58. anxa13 ENSDARG00000013976 2476 1.467 0.731 0.736 - - - - - - - annexin A13 [Source:ZFIN;Acc:ZDB-GENE-010406-1]
59. eif4e2 ENSDARG00000038585 2116 1.455 0.747 - - - - - 0.708 - - eukaryotic translation initiation factor 4E family member 2 [Source:ZFIN;Acc:ZDB-GENE-050327-59]
60. qkia ENSDARG00000097478 18572 1.438 0.703 - - - 0.735 - - - - QKI, KH domain containing, RNA binding a [Source:ZFIN;Acc:ZDB-GENE-990415-230]
61. brd2a ENSDARG00000022280 3481 1.432 - - - - - - 0.713 - 0.719 bromodomain containing 2a [Source:ZFIN;Acc:ZDB-GENE-990415-248]
62. abl1 ENSDARG00000035187 3553 1.429 - - - - - 0.714 - - 0.715 c-abl oncogene 1, non-receptor tyrosine kinase [Source:ZFIN;Acc:ZDB-GENE-100812-9]
63. rap2c ENSDARG00000015649 4709 1.418 - - - - - 0.716 0.702 - - RAP2C, member of RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-041024-1]
64. ppp3ccb ENSDARG00000057456, ENSDARG00000116250 6265 1.411 0.700 - - - - 0.711 - - - protein phosphatase 3, catalytic subunit, gamma isozyme, b [Source:ZFIN;Acc:ZDB-GENE-070112-1102]
65. ctnnbip1 ENSDARG00000038954 2519 1.406 - 0.704 - - - - - - 0.702 catenin, beta interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-000906-3]
66. dnttip2 ENSDARG00000057648 2381 0.977 - - - - 0.977 - - - - deoxynucleotidyltransferase, terminal, interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080513-5]
67. UBL4A UBL4A 1115 0.974 - - - - - - - - 0.974
68. ppp4r2b ENSDARG00000053447 2506 0.973 - - - - 0.973 - - - - protein phosphatase 4, regulatory subunit 2b [Source:ZFIN;Acc:ZDB-GENE-030131-3008]
69. E2F6 E2F6 1271 0.972 - - - - 0.972 - - - -
70. nol12 ENSDARG00000038027 2288 0.969 - - - - 0.969 - - - - nucleolar protein 12 [Source:ZFIN;Acc:ZDB-GENE-040426-1035]
71. arhgdia ENSDARG00000043795 14642 0.967 - - - - 0.967 - - - - Rho GDP dissociation inhibitor (GDI) alpha [Source:ZFIN;Acc:ZDB-GENE-040426-2816]
72. polr1d ENSDARG00000037570 860 0.965 - - - - - - - - 0.965 RNA polymerase I and III subunit D [Source:ZFIN;Acc:ZDB-GENE-040930-4]
73. aip ENSDARG00000104437 3574 0.964 - - - - 0.964 - - - - aryl hydrocarbon receptor interacting protein [Source:ZFIN;Acc:ZDB-GENE-030131-6735]
74. ppp1r7 ENSDARG00000009740 2606 0.963 - - - - 0.963 - - - - protein phosphatase 1, regulatory (inhibitor) subunit 7 [Source:ZFIN;Acc:ZDB-GENE-051113-288]
75. FRMPD3 ENSDARG00000074865, ENSDARG00000109705 276 0.962 - - - - - - - - 0.962 FERM and PDZ domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-100316-9]
76. foxred2 ENSDARG00000061354 718 0.96 - - - - - - - - 0.960 FAD-dependent oxidoreductase domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-060929-1026]
77. wsb1 ENSDARG00000021343 3828 0.959 - - - - 0.959 - - - - WD repeat and SOCS box containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1946]
78. spata13 ENSDARG00000062837 5330 0.959 - - - - 0.959 - - - - spermatogenesis associated 13 [Source:ZFIN;Acc:ZDB-GENE-091116-25]
79. ikbkb ENSDARG00000079123 498 0.957 - - - - - - - - 0.957 inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta [Source:ZFIN;Acc:ZDB-GENE-071115-2]
80. klhdc10 ENSDARG00000007764 529 0.955 - - - - - - - - 0.955 kelch domain containing 10 [Source:ZFIN;Acc:ZDB-GENE-040426-776]
81. rab11a ENSDARG00000041450, ENSDARG00000109465 7418 0.954 - - - - 0.954 - - - - RAB11a, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-041114-53]
82. rnd3a ENSDARG00000076799 4705 0.954 - - - - 0.954 - - - - Rho family GTPase 3a [Source:ZFIN;Acc:ZDB-GENE-010319-40]
83. CABZ01072607.1 ENSDARG00000113761 784 0.953 - - - - 0.953 - - - - dynein cytoplasmic 2 heavy chain 1 [Source:NCBI gene;Acc:100332402]
84. prpf4ba ENSDARG00000008784 936 0.951 - - - - - - - - 0.951 pre-mRNA processing factor 4Ba [Source:ZFIN;Acc:ZDB-GENE-040426-947]
85. CR678040.1 CR678040.1 117 0.951 - - - - - - - - 0.951
86. TUBB8P7_2 TUBB8P7_2 565 0.95 - - - - - - - - 0.950
87. CR361563.1 CR361563.1 1355 0.95 - - - - 0.950 - - - -
88. flrt2 ENSDARG00000079355, ENSDARG00000097299, ENSDARG00000116552 1464 0.949 - - - - - - - - 0.949 fibronectin leucine rich transmembrane protein 2 [Source:ZFIN;Acc:ZDB-GENE-070705-267]
89. pif1 ENSDARG00000020289 216 0.949 - - - - - - - - 0.949 PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-4928]
90. rnf121 ENSDARG00000060282 1809 0.949 - - - - - - - - 0.949 ring finger protein 121 [Source:ZFIN;Acc:ZDB-GENE-050809-3]
91. cenpk ENSDARG00000039616 744 0.949 - - - - - - - - 0.949 centromere protein K [Source:ZFIN;Acc:ZDB-GENE-090313-204]
92. sema3fa ENSDARG00000011163 759 0.949 - - - - 0.949 - - - - sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa [Source:ZFIN;Acc:ZDB-GENE-050513-1]
93. hoxc11a ENSDARG00000070351 1783 0.949 - - - - 0.949 - - - - homeobox C11a [Source:ZFIN;Acc:ZDB-GENE-990415-111]
94. hic1l ENSDARG00000045660 1489 0.948 - - - - - - - - 0.948 hypermethylated in cancer 1 like [Source:ZFIN;Acc:ZDB-GENE-030620-1]
95. st8sia5 ENSDARG00000036584 529 0.948 - - - - - - - - 0.948 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 [Source:ZFIN;Acc:ZDB-GENE-060322-8]
96. KIF4A KIF4A 3322 0.948 - - - - 0.948 - - - -
97. SNAP91 ENSDARG00000098809 556 0.948 - - - - - - - - 0.948 synaptosomal-associated protein 91 [Source:ZFIN;Acc:ZDB-GENE-100422-6]
98. slc9a3r1 slc9a3r1 743 0.948 - - - - 0.948 - - - -
99. CENPF ENSDARG00000055133 436 0.948 - - - - - - - - 0.948 centromere protein F [Source:ZFIN;Acc:ZDB-GENE-041111-205]
100. pbx1a ENSDARG00000100494 854 0.947 - - - - 0.947 - - - - pre-B-cell leukemia homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-000405-1]

There are 1085 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA