Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for sox4a

Gene Name Gene ID Reads Annotation
sox4a ENSDARG00000004588, ENSDARG00000096389 2213 SRY (sex determining region Y)-box 4a [Source:ZFIN;Acc:ZDB-GENE-030131-8290]










Genes with expression patterns similar to sox4a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. sox4a ENSDARG00000004588, ENSDARG00000096389 2213 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SRY (sex determining region Y)-box 4a [Source:ZFIN;Acc:ZDB-GENE-030131-8290]
2. otx2 766 2.622 - - - - 0.991 - - 0.811 0.820 orthodenticle homeobox 2, transcript variant X2
3. lamtor5 ENSDARG00000090194, ENSDARG00000115255 2539 2.551 0.849 - - - 0.984 - 0.718 - - late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 [Source:ZFIN;Acc:ZDB-GENE-110411-193]
4. zgc:66475 ENSDARG00000099519 1348 2.545 0.965 0.718 - - - - 0.862 - - zgc:66475 [Source:ZFIN;Acc:ZDB-GENE-040426-1644]
5. gpm6ab ENSDARG00000004621 5825 2.534 0.815 - - - 0.972 - - - 0.747 glycoprotein M6Ab [Source:ZFIN;Acc:ZDB-GENE-030710-8]
6. stx6 ENSDARG00000042742, ENSDARG00000115635 1208 2.421 - - - - 0.993 - - 0.720 0.708 syntaxin 6 [Source:ZFIN;Acc:ZDB-GENE-030131-858]
7. vezf1a ENSDARG00000008247 1449 2.272 - - - 0.742 - - - 0.740 0.790 vascular endothelial zinc finger 1a [Source:ZFIN;Acc:ZDB-GENE-040108-4]
8. pcdh19 ENSDARG00000034344 2378 2.248 - 0.808 - - - - - 0.711 0.729 protocadherin 19 [Source:ZFIN;Acc:ZDB-GENE-030131-4218]
9. fam89a ENSDARG00000079979 4375 1.879 0.908 - - - 0.971 - - - - family with sequence similarity 89, member A [Source:ZFIN;Acc:ZDB-GENE-111019-1]
10. znf207a ENSDARG00000015538 2630 1.851 0.887 - - - 0.964 - - - - zinc finger protein 207, a [Source:ZFIN;Acc:ZDB-GENE-040426-2273]
11. glud1a ENSDARG00000008816, ENSDARG00000114252 3468 1.793 - 0.815 - - 0.978 - - - - glutamate dehydrogenase 1a [Source:ZFIN;Acc:ZDB-GENE-030114-2]
12. cdkn1a ENSDARG00000076554 591 1.792 - 0.804 - - 0.988 - - - - cyclin-dependent kinase inhibitor 1A [Source:ZFIN;Acc:ZDB-GENE-070705-7]
13. mad2l1 ENSDARG00000004713 3398 1.773 0.889 - - - 0.884 - - - - MAD2 mitotic arrest deficient-like 1 (yeast) [Source:ZFIN;Acc:ZDB-GENE-030515-3]
14. CABZ01092303.1 CABZ01092303.1 8825 1.769 0.877 - - - 0.892 - - - -
15. SLC7A5 ENSDARG00000099265, ENSDARG00000115845 2319 1.761 - - - - 0.991 - - - 0.770 solute carrier family 7 (amino acid transporter light chain, L system), member 5 [Source:ZFIN;Acc:ZDB-GENE-080818-4]
16. SCML2 ENSDARG00000012949 1310 1.753 0.959 - - - - - - - 0.794 Scm polycomb group protein like 2 [Source:ZFIN;Acc:ZDB-GENE-130530-546]
17. CT955967.1 ENSDARG00000099956 2885 1.739 - - - - 0.983 - - - 0.756
18. ptgr1 ENSDARG00000024877, ENSDARG00000115676 4312 1.735 - 0.749 - - 0.986 - - - - prostaglandin reductase 1 [Source:ZFIN;Acc:ZDB-GENE-041212-80]
19. adcyap1b ENSDARG00000027740 1539 1.731 - - - - 0.993 - - 0.738 - adenylate cyclase activating polypeptide 1b [Source:ZFIN;Acc:ZDB-GENE-041010-89]
20. eng2b eng2b 865 1.729 - - - - 0.982 - - - 0.747
21. BAZ1A ENSDARG00000063233, ENSDARG00000099745 1432 1.729 - - - - 0.990 - - - 0.739 bromodomain adjacent to zinc finger domain, 1A [Source:ZFIN;Acc:ZDB-GENE-030131-6105]
22. prrc1 ENSDARG00000044304 1567 1.728 - - - - 0.983 - 0.745 - - proline-rich coiled-coil 1 [Source:ZFIN;Acc:ZDB-GENE-041024-9]
23. mab21l1 ENSDARG00000102047 4665 1.722 - - - - 0.986 - - 0.736 - mab-21-like 1 [Source:ZFIN;Acc:ZDB-GENE-020516-1]
24. gnb4b ENSDARG00000115383 7457 1.721 0.941 - - - - - 0.780 - - guanine nucleotide binding protein (G protein), beta polypeptide 4b [Source:ZFIN;Acc:ZDB-GENE-041114-167]
25. commd2 ENSDARG00000003373 540 1.712 0.963 - - - - - 0.749 - - COMM domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-040718-118]
26. pdap1a ENSDARG00000092546, ENSDARG00000116115 7617 1.711 - - - - 0.959 - - 0.752 - pdgfa associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1693]
27. ALPK1 195 1.709 0.952 - - - - 0.757 - - - alpha-kinase 1
28. phf20b ENSDARG00000038737, ENSDARG00000111662, ENSDARG00000116554 1385 1.706 0.941 - - - - - - 0.765 - PHD finger protein 20, b [Source:ZFIN;Acc:ZDB-GENE-040822-33]
29. irf2bp2a ENSDARG00000004702 6719 1.706 - 0.765 - - 0.941 - - - - interferon regulatory factor 2 binding protein 2a [Source:ZFIN;Acc:ZDB-GENE-030131-7809]
30. tmem198a ENSDARG00000042115 1694 1.698 - - - - 0.961 - - - 0.737 transmembrane protein 198a [Source:ZFIN;Acc:ZDB-GENE-070912-716]
31. sf1 ENSDARG00000008188 5142 1.698 - - - - 0.955 - - - 0.743 splicing factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2492]
32. paip2b ENSDARG00000008706 4255 1.694 0.904 0.790 - - - - - - - poly(A) binding protein interacting protein 2B [Source:ZFIN;Acc:ZDB-GENE-040426-1736]
33. sap130b ENSDARG00000079352 1468 1.692 - 0.703 - - 0.989 - - - - Sin3A-associated protein b [Source:ZFIN;Acc:ZDB-GENE-070912-570]
34. barhl1a ENSDARG00000035508, ENSDARG00000110061, ENSDARG00000112355 374 1.689 - - - 0.798 - - - - 0.891 BarH-like homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-050417-212]
35. cndp2 ENSDARG00000003931 1177 1.682 0.868 0.814 - - - - - - - carnosine dipeptidase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5499]
36. zgc:92313 ENSDARG00000040513 790 1.68 0.975 - - - - - 0.705 - - zgc:92313 [Source:ZFIN;Acc:ZDB-GENE-040718-339]
37. stmn1b ENSDARG00000033655 9491 1.679 - - - - 0.936 - - 0.743 - stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
38. tax1bp3 ENSDARG00000059177 4324 1.677 0.954 - - - - - 0.723 - - Tax1 (human T-cell leukemia virus type I) binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2830]
39. cpsf5 cpsf5 1841 1.677 0.965 0.712 - - - - - - -
40. fam208b ENSDARG00000074168 2244 1.662 0.884 0.778 - - - - - - - family with sequence similarity 208, member B [Source:ZFIN;Acc:ZDB-GENE-041111-225]
41. USO1 ENSDARG00000019581 1617 1.659 0.952 - - - - - 0.707 - - USO1 vesicle transport factor [Source:ZFIN;Acc:ZDB-GENE-040426-688]
42. celf3a ENSDARG00000034668 2432 1.656 - - - - - - - 0.816 0.840 cugbp, Elav-like family member 3a [Source:ZFIN;Acc:ZDB-GENE-000501-2]
43. fez1 ENSDARG00000023174 701 1.655 - - - - - - - 0.850 0.805 fasciculation and elongation protein zeta 1 (zygin I) [Source:ZFIN;Acc:ZDB-GENE-040426-2723]
44. hmgb1a ENSDARG00000099175, ENSDARG00000114353 17231 1.653 - - - - - - - 0.821 0.832 high mobility group box 1a [Source:ZFIN;Acc:ZDB-GENE-030131-341]
45. nfia ENSDARG00000062420 573 1.65 - - - - - - - 0.759 0.891 nuclear factor I/A [Source:ZFIN;Acc:ZDB-GENE-050208-501]
46. ddx39aa ENSDARG00000006225, ENSDARG00000116665 6675 1.645 - - - - 0.935 - - - 0.710 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Aa [Source:ZFIN;Acc:ZDB-GENE-030131-4275]
47. rgl2 ENSDARG00000007727 1096 1.643 0.919 - - - - - 0.724 - - ral guanine nucleotide dissociation stimulator-like 2 [Source:ZFIN;Acc:ZDB-GENE-010131-1]
48. foxg1a ENSDARG00000070769 928 1.616 - - - 0.810 - - - - 0.806 forkhead box G1a [Source:ZFIN;Acc:ZDB-GENE-990415-267]
49. bcl11ba ENSDARG00000062510 169 1.613 - - - 0.755 - - - - 0.858 B cell CLL/lymphoma 11Ba [Source:ZFIN;Acc:ZDB-GENE-061207-62]
50. tpm1 ENSDARG00000087402 1666 1.604 0.860 0.744 - - - - - - - tropomyosin 1 (alpha) [Source:ZFIN;Acc:ZDB-GENE-040426-854]
51. nup188 ENSDARG00000030022 2398 1.598 - 0.807 - - - - 0.791 - - nucleoporin 188 [Source:ZFIN;Acc:ZDB-GENE-030131-7184]
52. fam60al 2846 1.585 - - - - - - - 0.840 0.745 family with sequence similarity 60, member A, like
53. si:dkey-235h8.1 si:dkey-235h8.1 2457 1.584 - - - - - - - 0.880 0.704
54. ppih ENSDARG00000041530 2085 1.579 0.868 - - - - 0.711 - - - peptidylprolyl isomerase H (cyclophilin H) [Source:ZFIN;Acc:ZDB-GENE-040625-127]
55. polr2k ENSDARG00000075616 2047 1.571 0.826 - - - - - 0.745 - - polymerase (RNA) II (DNA directed) polypeptide K [Source:ZFIN;Acc:ZDB-GENE-070820-18]
56. pou3f2a ENSDARG00000070220 817 1.567 - - - - - - - 0.797 0.770 POU class 3 homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-980526-139]
57. DSCAML1 ENSDARG00000098057 321 1.565 - - - - - - - 0.807 0.758 Down syndrome cell adhesion molecule like 1 [Source:ZFIN;Acc:ZDB-GENE-110601-1]
58. TMEM57 TMEM57 260 1.564 - - - 0.814 - - - - 0.750
59. BX324132.5 BX324132.5 115 1.564 - - - - - - - 0.830 0.734
60. slbp ENSDARG00000100558 3405 1.561 - - - - - - 0.705 0.856 - stem-loop binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-9686]
61. zbtb18 ENSDARG00000028228 3653 1.558 - - - - - - - 0.779 0.779 zinc finger and BTB domain containing 18 [Source:ZFIN;Acc:ZDB-GENE-050419-73]
62. hnrnpub ENSDARG00000004735 16496 1.551 - - - - - - - 0.779 0.772 heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
63. tmem35 ENSDARG00000052567 5685 1.549 - - - - - - - 0.779 0.770 transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
64. ctnnb1 ENSDARG00000014571 12004 1.549 - 0.750 - - 0.799 - - - - catenin (cadherin-associated protein), beta 1 [Source:ZFIN;Acc:ZDB-GENE-980526-362]
65. apbb2b ENSDARG00000099995 1397 1.547 0.789 - - - - 0.758 - - - amyloid beta (A4) precursor protein-binding, family B, member 2b [Source:ZFIN;Acc:ZDB-GENE-090313-73]
66. cntnap2b ENSDARG00000074558, ENSDARG00000109616, ENSDARG00000116850 559 1.542 - - - - - - - 0.769 0.773 contactin associated protein like 2b [Source:NCBI gene;Acc:563345]
67. SATB1 SATB1 928 1.54 - - - - - - - 0.796 0.744
68. dpysl5a ENSDARG00000011141 1827 1.539 - - - - - - - 0.754 0.785 dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
69. arrdc2 ENSDARG00000020761 621 1.535 - 0.807 - - - 0.728 - - - arrestin domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-030131-7146]
70. zgc:109889 ENSDARG00000069600, ENSDARG00000113538 554 1.535 - - - - - - - 0.810 0.725 zgc:109889 [Source:ZFIN;Acc:ZDB-GENE-050522-547]
71. chmp1a ENSDARG00000102643 1078 1.534 0.830 - - - - - 0.704 - - charged multivesicular body protein 1A [Source:ZFIN;Acc:ZDB-GENE-040426-1474]
72. gpsm1a ENSDARG00000092517 784 1.533 - - - - - - - 0.793 0.740 G protein signaling modulator 1a [Source:ZFIN;Acc:ZDB-GENE-060526-302]
73. ube2d1b ENSDARG00000038576 5971 1.528 0.772 - - - - - - 0.756 - ubiquitin-conjugating enzyme E2D 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2735]
74. wu:fc51f04 wu:fc51f04 7074 1.527 - - - - - - - 0.761 0.766
75. tia1 ENSDARG00000052536, ENSDARG00000114478 4392 1.527 - - - - - - - 0.721 0.806 TIA1 cytotoxic granule-associated RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-1506]
76. arf2 arf2 12369 1.525 0.747 0.778 - - - - - - -
77. zgc:65895 ENSDARG00000034086 1258 1.525 - - - - - - - 0.794 0.731 zgc:65895 [Source:ZFIN;Acc:ZDB-GENE-040426-1466]
78. arhgef18a ENSDARG00000011157 1702 1.523 0.798 - - - - 0.725 - - - rho/rac guanine nucleotide exchange factor (GEF) 18a [Source:ZFIN;Acc:ZDB-GENE-040516-14]
79. xpr1 xpr1 840 1.523 - - - 0.728 - - - 0.795 -
80. ubr5 ENSDARG00000018192 9267 1.514 - - - - 0.810 - - 0.704 - ubiquitin protein ligase E3 component n-recognin 5 [Source:ZFIN;Acc:ZDB-GENE-030131-6559]
81. myt1la ENSDARG00000008209 120 1.511 - - - 0.746 - - - - 0.765 myelin transcription factor 1-like, a [Source:ZFIN;Acc:ZDB-GENE-041001-172]
82. lingo1b ENSDARG00000035899 86 1.51 - - - - - - - 0.754 0.756 leucine rich repeat and Ig domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-040912-136]
83. slc17a6a ENSDARG00000001127 337 1.508 - - - - - - - 0.769 0.739 solute carrier family 17 (vesicular glutamate transporter), member 6a [Source:ZFIN;Acc:ZDB-GENE-050105-4]
84. nono ENSDARG00000020482, ENSDARG00000115783 12482 1.504 - - - - - - - 0.704 0.800 non-POU domain containing, octamer-binding [Source:ZFIN;Acc:ZDB-GENE-030131-713]
85. zswim5 ENSDARG00000055900 4243 1.501 - - - - - - - 0.737 0.764 zinc finger, SWIM-type containing 5 [Source:ZFIN;Acc:ZDB-GENE-030925-30]
86. marcksa ENSDARG00000004049 2518 1.496 - - - - - - - 0.748 0.748 myristoylated alanine-rich protein kinase C substrate a [Source:ZFIN;Acc:ZDB-GENE-050522-145]
87. rbm4.3 ENSDARG00000022129 28571 1.495 - - - - 0.758 - - 0.737 - RNA binding motif protein 4.3 [Source:ZFIN;Acc:ZDB-GENE-040426-1938]
88. FBXW12 FBXW12 658 1.492 0.712 - - - - - 0.780 - -
89. gas7a ENSDARG00000074443, ENSDARG00000111294 250 1.489 - - - 0.742 - - - 0.747 - growth arrest-specific 7a [Source:ZFIN;Acc:ZDB-GENE-130128-1]
90. axin2 ENSDARG00000100149 4223 1.487 0.756 0.731 - - - - - - - axin 2 (conductin, axil) [Source:ZFIN;Acc:ZDB-GENE-000403-2]
91. nbeaa ENSDARG00000070080 862 1.486 - - - 0.768 - - - - 0.718 neurobeachin a [Source:ZFIN;Acc:ZDB-GENE-050320-68]
92. ttc9b ENSDARG00000068421 251 1.485 - - - - - - - 0.765 0.720 tetratricopeptide repeat domain 9B [Source:ZFIN;Acc:ZDB-GENE-050419-67]
93. insm1b ENSDARG00000053301 2032 1.484 - - - 0.719 - - - - 0.765 insulinoma-associated 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2602]
94. cldnj ENSDARG00000058880 59 1.483 - - - 0.776 - 0.707 - - - claudin j [Source:ZFIN;Acc:ZDB-GENE-010328-10]
95. akirin2 ENSDARG00000058729 13245 1.479 0.775 - - - - - - 0.704 - akirin 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2944]
96. cyp24a1 ENSDARG00000103277 181 1.477 0.759 - - - - 0.718 - - - cytochrome P450, family 24, subfamily A, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-060825-1]
97. clvs2 ENSDARG00000053122 1390 1.476 - - - - - - - 0.763 0.713 clavesin 2 [Source:ZFIN;Acc:ZDB-GENE-041014-313]
98. rnf144aa ENSDARG00000020600 768 1.476 - - - - - 0.744 0.732 - - ring finger protein 144aa [Source:ZFIN;Acc:ZDB-GENE-041001-88]
99. fbxl16 ENSDARG00000060915 259 1.467 - - - - - - - 0.752 0.715 F-box and leucine-rich repeat protein 16 [Source:ZFIN;Acc:ZDB-GENE-120215-180]
100. csdc2a ENSDARG00000041323, ENSDARG00000115932 490 1.466 - - - - - - - 0.744 0.722 cold shock domain containing C2, RNA binding a [Source:ZFIN;Acc:ZDB-GENE-040718-442]

There are 1383 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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