Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for sox3

Gene Name Gene ID Reads Annotation
sox3 ENSDARG00000053569 12016 SRY (sex determining region Y)-box 3 [Source:ZFIN;Acc:ZDB-GENE-980526-333]










Genes with expression patterns similar to sox3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. sox3 ENSDARG00000053569 12016 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SRY (sex determining region Y)-box 3 [Source:ZFIN;Acc:ZDB-GENE-980526-333]
2. dla ENSDARG00000010791 9281 5.026 0.966 0.876 - - - 0.984 0.742 0.701 0.757 deltaA [Source:ZFIN;Acc:ZDB-GENE-980526-29]
3. pou3f1 ENSDARG00000009823, ENSDARG00000112302 7037 4.698 0.806 0.778 0.797 - 0.720 - - 0.849 0.748 POU class 3 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-372]
4. dld ENSDARG00000020219 4928 4.236 0.916 0.873 - - - 0.984 0.725 - 0.738 deltaD [Source:ZFIN;Acc:ZDB-GENE-990415-47]
5. gpm6aa ENSDARG00000055455, ENSDARG00000110942 9156 3.871 0.821 0.820 - - - - 0.747 0.750 0.733 glycoprotein M6Aa [Source:ZFIN;Acc:ZDB-GENE-030710-7]
6. dlb ENSDARG00000004232 5120 3.391 0.790 0.821 - - - 0.995 - - 0.785 deltaB [Source:ZFIN;Acc:ZDB-GENE-980526-114]
7. si:ch73-21g5.7 ENSDARG00000093156 9412 3.363 0.949 0.828 0.844 - - - 0.742 - - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
8. gnao1a ENSDARG00000016676 8184 3.359 0.859 0.820 - - - 0.970 0.710 - - guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O, a [Source:ZFIN;Acc:ZDB-GENE-040426-1757]
9. pcdh1gc5 ENSDARG00000104826 10052 3.303 0.902 0.864 0.804 - - - 0.733 - - protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
10. nova2 ENSDARG00000017673 7685 3.274 0.938 0.885 - - - - 0.739 - 0.712 neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
11. AGO1 ENSDARG00000092644 4521 3.257 0.936 0.786 0.818 - - - 0.717 - - argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
12. neurod4 ENSDARG00000003469, ENSDARG00000117149 1732 3.229 - 0.816 - - - 0.964 0.721 - 0.728 neuronal differentiation 4 [Source:ZFIN;Acc:ZDB-GENE-030730-1]
13. msi1 ENSDARG00000010710 2634 3.189 0.858 0.811 0.814 - - - 0.706 - - musashi RNA-binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050320-86]
14. hmgb1a ENSDARG00000099175, ENSDARG00000114353 17231 3.187 - - - 0.889 - 0.841 - 0.725 0.732 high mobility group box 1a [Source:ZFIN;Acc:ZDB-GENE-030131-341]
15. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 3.158 0.935 - 0.746 - - - 0.703 - 0.774 cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
16. C8H1orf106 C8H1orf106 2690 3.148 0.924 0.780 - - - - 0.714 - 0.730
17. cspg5a ENSDARG00000069981 1699 3.067 0.825 0.788 0.740 - - - 0.714 - - chondroitin sulfate proteoglycan 5a [Source:ZFIN;Acc:ZDB-GENE-080425-4]
18. tmem35 ENSDARG00000052567 5685 2.995 0.842 - - - - - 0.707 0.719 0.727 transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
19. CR936437.1 CR936437.1 6465 2.968 0.744 - 0.785 - - - - 0.727 0.712
20. HNRNPAB HNRNPAB 22267 2.591 - - - - - 0.979 - 0.852 0.760
21. wu:fc51f04 wu:fc51f04 7074 2.587 - 0.855 - - - - 0.962 - 0.770
22. cplx2l ENSDARG00000018997 3975 2.57 0.915 0.943 - - - - 0.712 - - complexin 2, like [Source:ZFIN;Acc:ZDB-GENE-040718-160]
23. hmp19 2554 2.563 0.847 - - 0.970 - - 0.746 - - HMP19 protein
24. neurog1 ENSDARG00000056130 3924 2.53 0.920 0.861 - - - - 0.749 - - neurogenin 1 [Source:ZFIN;Acc:ZDB-GENE-990415-174]
25. TUBB8P7_1 TUBB8P7_1 2722 2.499 0.856 0.919 - - - - 0.724 - -
26. sox2 ENSDARG00000070913 2763 2.497 0.926 0.831 - - - - 0.740 - - SRY (sex determining region Y)-box 2 [Source:ZFIN;Acc:ZDB-GENE-030909-1]
27. nadl1.1 1200 2.495 0.925 0.832 - - - - 0.738 - - neural adhesion molecule L1.1, transcript variant X1
28. nes ENSDARG00000088805 2710 2.491 0.915 0.833 - - - - 0.743 - - nestin [Source:ZFIN;Acc:ZDB-GENE-071119-2]
29. irx1b ENSDARG00000056594 2224 2.477 0.843 0.903 - - - - 0.731 - - iroquois homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-010716-1]
30. hdac1 ENSDARG00000015427 19804 2.476 0.820 - 0.838 - - - - 0.818 - histone deacetylase 1 [Source:ZFIN;Acc:ZDB-GENE-020419-32]
31. sox19a ENSDARG00000010770, ENSDARG00000110497 4683 2.466 0.921 - 0.807 - - - 0.738 - - SRY (sex determining region Y)-box 19a [Source:ZFIN;Acc:ZDB-GENE-980526-102]
32. rrm2_1 ENSDARG00000020711, ENSDARG00000078069 11634 2.445 - - 0.735 - - - 0.885 - 0.825 ribonucleotide reductase M2 polypeptide [Source:ZFIN;Acc:ZDB-GENE-990415-25]
33. fam131bb ENSDARG00000070575 1054 2.444 - 0.753 - - - 0.959 0.732 - - family with sequence similarity 131, member Bb [Source:ZFIN;Acc:ZDB-GENE-100922-12]
34. arnt2 ENSDARG00000103697 5731 2.437 - - 0.737 0.977 - - - - 0.723 aryl-hydrocarbon receptor nuclear translocator 2 [Source:ZFIN;Acc:ZDB-GENE-001207-3]
35. stx1b ENSDARG00000000503 2724 2.433 0.895 0.823 - - - - 0.715 - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
36. pcsk1nl ENSDARG00000076170 1232 2.427 0.852 0.841 - - - - 0.734 - - proprotein convertase subtilisin/kexin type 1 inhibitor, like [Source:ZFIN;Acc:ZDB-GENE-090427-2]
37. hmgb1b ENSDARG00000030479 10398 2.42 0.789 - 0.870 - - - - 0.761 - high mobility group box 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8480]
38. cdkn1c cdkn1c 17427 2.417 0.755 - - - - 0.929 - - 0.733
39. syt11a ENSDARG00000057913 1145 2.414 0.866 0.816 - - - - 0.732 - - synaptotagmin XIa [Source:ZFIN;Acc:ZDB-GENE-040426-2815]
40. dpysl5a ENSDARG00000011141 1827 2.413 0.905 - 0.796 - - - 0.712 - - dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
41. GLRA3 ENSDARG00000011066 242 2.413 0.937 0.746 - - - - 0.730 - - glycine receptor, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-020402-1]
42. sv2bb ENSDARG00000060711 196 2.411 0.865 0.821 - - - - 0.725 - - synaptic vesicle glycoprotein 2Bb [Source:ZFIN;Acc:ZDB-GENE-030131-2789]
43. CHL1 CHL1 1553 2.411 0.868 0.840 0.703 - - - - - -
44. TUBA1A ENSDARG00000001889 25294 2.409 0.799 - - - - - 0.733 0.877 - tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
45. zic1 ENSDARG00000015567 2520 2.408 0.773 0.765 0.870 - - - - - - zic family member 1 (odd-paired homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-000208-4]
46. tuba1c ENSDARG00000055216 8384 2.406 0.944 - - - - - 0.721 - 0.741 tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
47. dbx2 2971 2.406 0.862 0.816 - - - - 0.728 - - developing brain homeobox 2
48. mapk12b ENSDARG00000006409 2246 2.403 0.834 0.828 - - - - 0.741 - - mitogen-activated protein kinase 12b [Source:ZFIN;Acc:ZDB-GENE-041210-123]
49. stmn1b ENSDARG00000033655 9491 2.393 0.859 - - - - - 0.736 0.798 - stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
50. Sep-03 Sep-03 1124 2.392 0.735 0.854 0.803 - - - - - -
51. slc18a3a ENSDARG00000006356 1285 2.386 0.846 0.798 - - - - 0.742 - - solute carrier family 18 (vesicular acetylcholine transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-060929-990]
52. CABZ01070258.1 ENSDARG00000105687 3643 2.385 0.891 - 0.781 - - - 0.713 - -
53. sox21b ENSDARG00000008540 1460 2.374 0.865 0.770 - - - - 0.739 - - SRY (sex determining region Y)-box 21b [Source:ZFIN;Acc:ZDB-GENE-040429-1]
54. neurod neurod 1189 2.37 0.832 0.810 - - - - - 0.728 -
55. notch3 ENSDARG00000052139 15033 2.365 0.743 - - - - - 0.894 0.728 - notch 3 [Source:ZFIN;Acc:ZDB-GENE-000329-5]
56. sypa ENSDARG00000042974, ENSDARG00000110528 3217 2.365 0.893 0.746 - - - - 0.726 - - synaptophysin a [Source:ZFIN;Acc:ZDB-GENE-031104-2]
57. CABZ01111990.1 CABZ01111990.1 4374 2.365 0.840 - 0.812 - - - 0.713 - -
58. onecut1 ENSDARG00000007982, ENSDARG00000112251 6307 2.36 0.888 0.745 - - - - 0.727 - - one cut homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1469]
59. CU928222.1 ENSDARG00000097436 1662 2.355 0.838 0.799 - - - - 0.718 - -
60. myt1b ENSDARG00000102879 5411 2.352 0.852 0.795 - - - - 0.705 - - myelin transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-090313-67]
61. lfng ENSDARG00000037879 11783 2.345 0.891 0.717 - - - - - - 0.737 LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:ZFIN;Acc:ZDB-GENE-980605-16]
62. ctnnd2b ENSDARG00000003779 964 2.345 0.891 - 0.724 - - - 0.730 - - catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]
63. stmn1a ENSDARG00000004169 21169 2.343 0.760 - 0.722 - - - - - 0.861 stathmin 1a [Source:ZFIN;Acc:ZDB-GENE-031006-14]
64. gng3 ENSDARG00000009553 2530 2.341 0.868 0.750 - - - - 0.723 - - guanine nucleotide binding protein (G protein), gamma 3 [Source:ZFIN;Acc:ZDB-GENE-010705-1]
65. npas3b npas3b 1446 2.331 0.826 - 0.765 - - - 0.740 - -
66. slc35g2b ENSDARG00000045447 378 2.329 0.850 0.766 - - - - 0.713 - - solute carrier family 35, member G2b [Source:ZFIN;Acc:ZDB-GENE-050320-142]
67. slc1a2b ENSDARG00000102453 3136 2.315 0.790 0.821 - - - - 0.704 - - solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
68. marcksl1b ENSDARG00000035715 37390 2.313 0.733 - - - - - - 0.802 0.778 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
69. hmgb2b ENSDARG00000053990 11519 2.305 0.749 - - - - - - 0.768 0.788 high mobility group box 2b [Source:ZFIN;Acc:ZDB-GENE-040912-122]
70. scn2b ENSDARG00000101713 796 2.298 0.762 0.805 - - - - 0.731 - - sodium channel, voltage-gated, type II, beta [Source:ZFIN;Acc:ZDB-GENE-070920-1]
71. rrm1 ENSDARG00000014017 7296 2.295 0.844 0.721 - - - - - - 0.730 ribonucleotide reductase M1 polypeptide [Source:ZFIN;Acc:ZDB-GENE-990415-247]
72. pou3f2b ENSDARG00000076262, ENSDARG00000112713 2439 2.291 0.793 0.774 - - - - 0.724 - - POU class 3 homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-980526-370]
73. ptprna ENSDARG00000058646 1327 2.291 - 0.712 0.849 - - - 0.730 - - protein tyrosine phosphatase, receptor type, Na [Source:ZFIN;Acc:ZDB-GENE-030131-3511]
74. rheb ENSDARG00000090213 1432 2.289 0.808 0.779 - - - - 0.702 - - Ras homolog, mTORC1 binding [Source:ZFIN;Acc:ZDB-GENE-040426-1690]
75. eno2 ENSDARG00000014287 2162 2.288 0.815 0.727 - - - - 0.746 - - enolase 2 [Source:ZFIN;Acc:ZDB-GENE-040704-27]
76. hpca ENSDARG00000018397, ENSDARG00000110115 3866 2.276 0.811 0.764 - - - - 0.701 - - hippocalcin [Source:ZFIN;Acc:ZDB-GENE-040426-1683]
77. tmpob ENSDARG00000022978 8121 2.27 - - 0.799 - - - - 0.753 0.718 thymopoietin b [Source:ZFIN;Acc:ZDB-GENE-050522-8]
78. sox19b ENSDARG00000040266 532 2.269 0.834 0.727 - - - - 0.708 - - SRY (sex determining region Y)-box 19b [Source:ZFIN;Acc:ZDB-GENE-010111-1]
79. hnrnpab hnrnpab 72354 2.267 0.724 - - 0.727 - - - 0.816 -
80. st8sia2 ENSDARG00000018788 2183 2.26 0.732 - 0.813 - - - 0.715 - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-020919-4]
81. MAP6 MAP6 643 2.255 0.737 0.785 - - - - 0.733 - -
82. SLC5A7 SLC5A7 453 2.254 0.736 0.794 - - - - 0.724 - -
83. ilf2 ENSDARG00000014591 14543 2.252 - - 0.715 - 0.773 - - - 0.764 interleukin enhancer binding factor 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2345]
84. her13 ENSDARG00000007097 2000 2.249 0.821 - 0.715 - - - 0.713 - - hairy-related 13 [Source:ZFIN;Acc:ZDB-GENE-050228-1]
85. SNAP91 ENSDARG00000098809 556 2.248 0.711 0.810 - - - - 0.727 - - synaptosomal-associated protein 91 [Source:ZFIN;Acc:ZDB-GENE-100422-6]
86. hes6 ENSDARG00000019335 4754 2.244 0.800 0.705 - - - - - 0.739 - hes family bHLH transcription factor 6 [Source:ZFIN;Acc:ZDB-GENE-030828-5]
87. adam23a ENSDARG00000062323 580 2.242 0.786 0.740 - - - - 0.716 - - ADAM metallopeptidase domain 23a [Source:ZFIN;Acc:ZDB-GENE-070810-2]
88. parp1 ENSDARG00000019529 6787 2.241 0.701 - 0.768 0.772 - - - - - poly (ADP-ribose) polymerase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3955]
89. her4.1 ENSDARG00000056732 1264 2.231 0.771 - 0.745 - - - 0.715 - - hairy-related 4, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-980526-521]
90. rfx4 ENSDARG00000026395, ENSDARG00000116861 2047 2.225 0.747 0.737 0.741 - - - - - - regulatory factor X, 4 [Source:ZFIN;Acc:ZDB-GENE-040909-2]
91. calca ENSDARG00000056590 150 2.221 0.716 0.760 - - - - 0.745 - - calcitonin/calcitonin-related polypeptide, alpha [Source:ZFIN;Acc:ZDB-GENE-040718-173]
92. nhlh2 ENSDARG00000025495 1860 2.221 0.730 - - - - - 0.740 0.751 - nescient helix loop helix 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1809]
93. nrarpa ENSDARG00000091419, ENSDARG00000111485 7867 2.216 0.722 - 0.729 - - - - - 0.765 NOTCH regulated ankyrin repeat protein a [Source:ZFIN;Acc:ZDB-GENE-030515-6]
94. rbfox3 rbfox3 1443 2.208 0.731 0.775 - - - - 0.702 - -
95. dpysl4 ENSDARG00000103490 534 2.192 0.735 - 0.723 - - - 0.734 - - dihydropyrimidinase-like 4 [Source:ZFIN;Acc:ZDB-GENE-050720-3]
96. CR848045.1 CR848045.1 459 2.176 0.731 0.728 - - - - 0.717 - -
97. her4.2_1 ENSDARG00000056729, ENSDARG00000094426 2383 2.158 0.743 - 0.713 - - - - 0.702 - hairy-related 4, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060815-1]
98. myt1a ENSDARG00000074030, ENSDARG00000116035 2839 2.152 - 0.723 - - - - 0.717 - 0.712 myelin transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3885]
99. map2 ENSDARG00000055052 6062 1.902 0.932 - - 0.970 - - - - - microtubule-associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-041010-118]
100. CABZ01034848.1 CABZ01034848.1 9936 1.811 - - - 0.966 - 0.845 - - -

There are 1183 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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