Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for sox2

Gene Name Gene ID Reads Annotation
sox2 ENSDARG00000070913 2763 SRY (sex determining region Y)-box 2 [Source:ZFIN;Acc:ZDB-GENE-030909-1]










Genes with expression patterns similar to sox2

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. sox2 ENSDARG00000070913 2763 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SRY (sex determining region Y)-box 2 [Source:ZFIN;Acc:ZDB-GENE-030909-1]
2. myt1b ENSDARG00000102879 5411 4.799 0.798 0.888 - 0.736 - 0.748 0.912 0.717 - myelin transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-090313-67]
3. fam60al 2846 4.537 0.728 - 0.703 0.829 0.749 0.767 0.761 - - family with sequence similarity 60, member A, like
4. gpm6aa ENSDARG00000055455, ENSDARG00000110942 9156 4.447 0.918 0.968 - - 0.806 - 0.976 0.779 - glycoprotein M6Aa [Source:ZFIN;Acc:ZDB-GENE-030710-7]
5. nrarpb ENSDARG00000018958 6225 4.205 0.916 0.752 - 0.823 - 0.741 0.973 - - NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
6. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 4.096 0.864 0.712 0.846 0.789 - - 0.885 - - cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
7. ctnnd2b ENSDARG00000003779 964 4.093 0.911 0.748 0.723 0.749 - - 0.962 - - catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]
8. TUBA1A ENSDARG00000001889 25294 4.043 0.753 - - 0.771 - 0.715 0.968 0.836 - tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
9. npas3b npas3b 1446 3.972 0.761 - 0.775 0.754 - 0.702 0.980 - -
10. neurod neurod 1189 3.962 0.801 0.774 - 0.733 - - 0.817 0.837 -
11. stmn2b ENSDARG00000070537 1586 3.919 0.810 0.791 - - - 0.721 0.760 0.837 - stathmin 2b [Source:ZFIN;Acc:ZDB-GENE-050522-207]
12. si:ch73-21g5.7 ENSDARG00000093156 9412 3.742 0.908 0.926 - - - 0.940 0.968 - - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
13. mapk12b ENSDARG00000006409 2246 3.643 0.877 0.879 - - - 0.930 0.957 - - mitogen-activated protein kinase 12b [Source:ZFIN;Acc:ZDB-GENE-041210-123]
14. nova2 ENSDARG00000017673 7685 3.617 0.965 0.915 - 0.763 - - 0.974 - - neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
15. pcdh1gc5 ENSDARG00000104826 10052 3.559 0.880 0.903 - - - 0.809 0.967 - - protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
16. atp1b4 ENSDARG00000053262 1337 3.555 0.844 0.858 - - - 0.896 0.957 - - ATPase Na+/K+ transporting subunit beta 4 [Source:ZFIN;Acc:ZDB-GENE-070412-1]
17. CLIP3 ENSDARG00000054456 734 3.554 0.762 0.922 - - - 0.976 0.894 - - CAP-GLY domain containing linker protein 3 [Source:ZFIN;Acc:ZDB-GENE-131127-193]
18. pcsk1nl ENSDARG00000076170 1232 3.515 0.753 0.934 - - - 0.885 0.943 - - proprotein convertase subtilisin/kexin type 1 inhibitor, like [Source:ZFIN;Acc:ZDB-GENE-090427-2]
19. syt11a ENSDARG00000057913 1145 3.513 0.803 0.837 - - - 0.898 0.975 - - synaptotagmin XIa [Source:ZFIN;Acc:ZDB-GENE-040426-2815]
20. tnika ENSDARG00000056218 728 3.491 0.747 0.846 - - - 0.964 0.934 - - TRAF2 and NCK interacting kinase a [Source:ZFIN;Acc:ZDB-GENE-030131-3767]
21. MAP6 MAP6 643 3.482 0.829 0.780 - - - 0.922 0.951 - -
22. gpr144 gpr144 479 3.479 0.924 0.740 - - - 0.924 0.891 - -
23. nhlh2 ENSDARG00000025495 1860 3.478 0.843 0.807 - - - - 0.977 0.851 - nescient helix loop helix 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1809]
24. mir10d-1 mir10d-1 860 3.461 0.770 0.969 - - - 0.832 0.890 - -
25. stmn2a ENSDARG00000033234 2272 3.445 0.775 0.908 - - - 0.888 0.874 - - stathmin 2a [Source:ZFIN;Acc:ZDB-GENE-041010-85]
26. rfx4 ENSDARG00000026395, ENSDARG00000116861 2047 3.433 0.820 0.880 - - - 0.822 0.911 - - regulatory factor X, 4 [Source:ZFIN;Acc:ZDB-GENE-040909-2]
27. atp1a1b ENSDARG00000019856, ENSDARG00000115121 1953 3.432 0.847 0.868 - - - 0.833 0.884 - - ATPase Na+/K+ transporting subunit alpha 1b [Source:ZFIN;Acc:ZDB-GENE-001212-5]
28. hpca ENSDARG00000018397, ENSDARG00000110115 3866 3.416 0.784 0.787 - - - 0.916 0.929 - - hippocalcin [Source:ZFIN;Acc:ZDB-GENE-040426-1683]
29. slc6a1b ENSDARG00000039647 1301 3.411 0.759 - - - - 0.973 0.938 0.741 - solute carrier family 6 (neurotransmitter transporter), member 1b [Source:ZFIN;Acc:ZDB-GENE-041114-57]
30. BX957337.1 BX957337.1 1685 3.411 0.784 0.876 - - - 0.879 0.872 - -
31. dpysl5a ENSDARG00000011141 1827 3.39 0.905 0.766 - - - 0.816 0.903 - - dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
32. cnrip1a ENSDARG00000091683 1491 3.369 0.714 0.744 - - - 0.958 0.953 - - cannabinoid receptor interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-040801-126]
33. zic4 ENSDARG00000031307 1228 3.365 0.752 0.949 - - - 0.814 0.850 - - zic family member 4 [Source:ZFIN;Acc:ZDB-GENE-040622-4]
34. onecut1 ENSDARG00000007982, ENSDARG00000112251 6307 3.361 0.891 0.818 - 0.703 - - 0.949 - - one cut homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1469]
35. amph ENSDARG00000007663 599 3.357 0.876 0.887 - - - 0.724 0.870 - - amphiphysin [Source:ZFIN;Acc:ZDB-GENE-040426-1711]
36. slc1a3a ENSDARG00000104431 9888 3.355 0.832 0.798 - - - 0.775 0.950 - - solute carrier family 1 (glial high affinity glutamate transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-030131-2159]
37. cldn5a ENSDARG00000043716 3865 3.344 0.838 0.732 - - - 0.823 0.951 - - claudin 5a [Source:ZFIN;Acc:ZDB-GENE-040426-2442]
38. vezf1a ENSDARG00000008247 1449 3.341 - - 0.835 0.873 - 0.798 0.835 - - vascular endothelial zinc finger 1a [Source:ZFIN;Acc:ZDB-GENE-040108-4]
39. ROBO3_1 ROBO3_1 468 3.338 0.755 0.797 - - - 0.906 0.880 - -
40. snap25a ENSDARG00000020609 4537 3.335 0.877 0.874 - - - 0.703 0.881 - - synaptosomal-associated protein, 25a [Source:ZFIN;Acc:ZDB-GENE-980526-468]
41. gap43 ENSDARG00000099744 4114 3.329 0.812 0.822 - - - 0.777 0.918 - - growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
42. scrt2 ENSDARG00000056175 4331 3.329 0.856 0.897 - - - 0.763 0.813 - - scratch family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4097]
43. TUSC5 TUSC5 1436 3.328 0.778 0.885 - - - 0.845 0.820 - -
44. slc32a1 ENSDARG00000059775 1092 3.322 0.868 0.862 - - - 0.719 0.873 - - solute carrier family 32 (GABA vesicular transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-061201-1]
45. tuba1c ENSDARG00000055216 8384 3.31 0.948 - - - 0.722 0.716 0.924 - - tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
46. mbd3b ENSDARG00000042029, ENSDARG00000061810 4561 3.31 0.854 - - - - 0.771 0.824 0.861 - methyl-CpG binding domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9792]
47. vsnl1a ENSDARG00000023228 1584 3.307 0.754 0.906 - - - 0.841 0.806 - - visinin-like 1a [Source:ZFIN;Acc:ZDB-GENE-041001-211]
48. pax6a ENSDARG00000103379 3061 3.296 0.783 0.881 0.778 - - - 0.854 - - paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
49. tubb5 ENSDARG00000037997 18691 3.273 0.850 - - 0.776 - - 0.903 0.744 - tubulin, beta 5 [Source:ZFIN;Acc:ZDB-GENE-031110-4]
50. dpysl2b ENSDARG00000032083, ENSDARG00000109782 3487 3.254 0.819 0.707 - - - 0.791 0.937 - - dihydropyrimidinase-like 2b [Source:ZFIN;Acc:ZDB-GENE-031105-1]
51. fzd3a ENSDARG00000021664 1958 3.234 0.829 - 0.770 - - - 0.902 0.733 - frizzled class receptor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-225]
52. MAP1A MAP1A 847 3.228 0.716 0.925 - - - 0.770 0.817 - -
53. dlb ENSDARG00000004232 5120 3.226 0.821 0.982 - 0.712 0.711 - - - - deltaB [Source:ZFIN;Acc:ZDB-GENE-980526-114]
54. slc1a2b ENSDARG00000102453 3136 3.224 0.803 0.824 0.708 - - - 0.889 - - solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
55. SV2B SV2B 208 3.219 0.724 0.887 - - - 0.799 0.809 - -
56. ptbp2b ENSDARG00000015901 2458 3.191 0.712 - 0.715 - - 0.906 0.858 - - polypyrimidine tract binding protein 2b [Source:ZFIN;Acc:ZDB-GENE-060810-49]
57. unc13c 197 3.135 0.726 0.833 - - - 0.739 0.837 - - unc-13 homolog C (C. elegans)
58. slc29a1a ENSDARG00000101289 2074 3.1 - - 0.829 0.736 0.775 0.760 - - - solute carrier family 29 (equilibrative nucleoside transporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-050913-138]
59. relnl relnl 863 3.096 - 0.781 0.743 - - 0.700 0.872 - -
60. hes6 ENSDARG00000019335 4754 3.091 0.780 0.796 - 0.770 - 0.745 - - - hes family bHLH transcription factor 6 [Source:ZFIN;Acc:ZDB-GENE-030828-5]
61. aplp1 ENSDARG00000098368 2317 3.091 0.773 0.733 - - - 0.882 - 0.703 - amyloid beta (A4) precursor-like protein 1 [Source:ZFIN;Acc:ZDB-GENE-040319-1]
62. LIG1 ENSDARG00000060041, ENSDARG00000110159, ENSDARG00000113788 8110 3.077 0.766 - - 0.772 - - 0.712 0.827 - ligase I, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-110404-2]
63. tle2 5014 3.045 0.789 - - 0.749 - 0.703 0.804 - - transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila), transcript variant X4
64. tmem47 ENSDARG00000057322 4691 2.991 0.741 0.816 - - - 0.714 0.720 - - transmembrane protein 47 [Source:ZFIN;Acc:ZDB-GENE-040426-2644]
65. pebp1 ENSDARG00000042069 6651 2.95 0.717 0.750 - - 0.701 - 0.782 - - phosphatidylethanolamine binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2621]
66. gsx2 ENSDARG00000043322, ENSDARG00000116417 329 2.92 - - 0.721 - 0.704 0.703 0.792 - - GS homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-041001-114]
67. nes ENSDARG00000088805 2710 2.909 0.945 0.971 - - - - 0.993 - - nestin [Source:ZFIN;Acc:ZDB-GENE-071119-2]
68. her15.2 her15.2 1701 2.886 - 0.951 - - - 0.966 0.969 - -
69. celf4 ENSDARG00000070045 1537 2.87 0.919 - - - - - 0.957 - 0.994 CUGBP, Elav-like family member 4 [Source:ZFIN;Acc:ZDB-GENE-040718-300]
70. st18 663 2.816 - 0.942 - - - 0.895 0.979 - - suppression of tumorigenicity 18, zinc finger
71. plp1a ENSDARG00000103732 3544 2.796 0.938 - - - - 0.886 0.972 - - proteolipid protein 1a [Source:ZFIN;Acc:ZDB-GENE-001202-1]
72. ptprnb ENSDARG00000077047 2743 2.789 0.949 0.940 - - - - 0.900 - - protein tyrosine phosphatase, receptor type, Nb [Source:ZFIN;Acc:ZDB-GENE-100505-1]
73. dla ENSDARG00000010791 9281 2.787 0.937 0.884 - - - - 0.966 - - deltaA [Source:ZFIN;Acc:ZDB-GENE-980526-29]
74. CU928222.1 ENSDARG00000097436 1662 2.782 0.866 0.958 - - - - 0.958 - -
75. PROCA1 ENSDARG00000069823 343 2.779 0.872 - - - - 0.964 0.943 - - protein interacting with cyclin A1 [Source:ZFIN;Acc:ZDB-GENE-110418-1]
76. sox21b ENSDARG00000008540 1460 2.77 0.912 0.897 - - - - 0.961 - - SRY (sex determining region Y)-box 21b [Source:ZFIN;Acc:ZDB-GENE-040429-1]
77. hmp19 2554 2.767 0.909 - - - - 0.872 0.986 - - HMP19 protein
78. neurog1 ENSDARG00000056130 3924 2.766 0.876 0.916 - - - - 0.974 - - neurogenin 1 [Source:ZFIN;Acc:ZDB-GENE-990415-174]
79. epb41a ENSDARG00000099283 860 2.75 - - - 0.806 - - 0.960 - 0.984 erythrocyte membrane protein band 4.1a [Source:ZFIN;Acc:ZDB-GENE-070705-81]
80. nadl1.1 1200 2.749 0.824 0.967 - - - - 0.958 - - neural adhesion molecule L1.1, transcript variant X1
81. slc18a3a ENSDARG00000006356 1285 2.747 0.831 0.955 - - - - 0.961 - - solute carrier family 18 (vesicular acetylcholine transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-060929-990]
82. zeb2a ENSDARG00000062338, ENSDARG00000111349, ENSDARG00000115964 6087 2.74 0.848 - - - - - 0.902 - 0.990 zinc finger E-box binding homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-070912-553]
83. stmn1b ENSDARG00000033655 9491 2.735 0.857 - - - - 0.921 0.957 - - stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
84. jagn1a ENSDARG00000041071, ENSDARG00000109427 397 2.729 - 0.909 - - - 0.910 0.910 - - jagunal homolog 1a [Source:ZFIN;Acc:ZDB-GENE-041010-80]
85. her4.2_1 ENSDARG00000056729, ENSDARG00000094426 2383 2.727 - 0.826 - - - 0.966 0.935 - - hairy-related 4, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060815-1]
86. slc35g2b ENSDARG00000045447 378 2.713 0.851 0.914 - - - - 0.948 - - solute carrier family 35, member G2b [Source:ZFIN;Acc:ZDB-GENE-050320-142]
87. atp2b3b ENSDARG00000023445 1424 2.713 - 0.880 - - - 0.862 0.971 - - ATPase plasma membrane Ca2+ transporting 3b [Source:ZFIN;Acc:ZDB-GENE-080409-2]
88. CHL1 CHL1 1553 2.707 0.886 0.928 - - - - 0.893 - -
89. eno2 ENSDARG00000014287 2162 2.705 0.833 - - - - 0.882 0.990 - - enolase 2 [Source:ZFIN;Acc:ZDB-GENE-040704-27]
90. stx1b ENSDARG00000000503 2724 2.69 0.861 0.926 - - - - 0.903 - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
91. GLRA3 ENSDARG00000011066 242 2.686 0.932 0.824 - - - - 0.930 - - glycine receptor, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-020402-1]
92. stxbp1a ENSDARG00000001994 5154 2.673 - 0.932 - - - 0.822 0.919 - - syntaxin binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-050626-106]
93. lrrn1 ENSDARG00000060115, ENSDARG00000115960 5175 2.672 0.911 - - 0.802 - - 0.959 - - leucine rich repeat neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-071126-1]
94. nrn1a ENSDARG00000071860 1311 2.67 - 0.812 - - - 0.868 0.990 - - neuritin 1a [Source:ZFIN;Acc:ZDB-GENE-040718-212]
95. UBE2QL1 ENSDARG00000079276 3474 2.667 0.847 - - - - - 0.851 - 0.969 ubiquitin-conjugating enzyme E2Q family-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8137]
96. mapta ENSDARG00000089314 2038 2.665 0.920 0.802 - - - 0.943 - - - microtubule-associated protein tau a [Source:ZFIN;Acc:ZDB-GENE-081027-1]
97. calca ENSDARG00000056590 150 2.654 0.738 0.951 - - - - 0.965 - - calcitonin/calcitonin-related polypeptide, alpha [Source:ZFIN;Acc:ZDB-GENE-040718-173]
98. sypa ENSDARG00000042974, ENSDARG00000110528 3217 2.652 0.886 - - - - 0.835 0.931 - - synaptophysin a [Source:ZFIN;Acc:ZDB-GENE-031104-2]
99. nrsn1 ENSDARG00000111235 123 2.647 - 0.771 - - - 0.962 0.914 - - neurensin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7491]
100. SNAP91 ENSDARG00000098809 556 2.64 0.794 0.925 - - - - 0.921 - - synaptosomal-associated protein 91 [Source:ZFIN;Acc:ZDB-GENE-100422-6]

There are 2786 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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