Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for sox1a

Gene Name Gene ID Reads Annotation
sox1a ENSDARG00000069866, ENSDARG00000110682, ENSDARG00000114571 576 SRY (sex determining region Y)-box 1a [Source:ZFIN;Acc:ZDB-GENE-040718-186]










Genes with expression patterns similar to sox1a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. sox1a ENSDARG00000069866, ENSDARG00000110682, ENSDARG00000114571 576 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SRY (sex determining region Y)-box 1a [Source:ZFIN;Acc:ZDB-GENE-040718-186]
2. cdh7 582 3.052 0.726 0.853 - - - 0.711 0.762 - - cadherin 7, type 2, transcript variant X1
3. clu ENSDARG00000010434 498 2.596 - 0.853 - - 0.989 - 0.754 - - clusterin [Source:ZFIN;Acc:ZDB-GENE-040426-1774]
4. urp2 ENSDARG00000067781 85 2.526 - 0.833 - - - 0.792 0.901 - - urotensin II-related peptide [Source:ZFIN;Acc:ZDB-GENE-110718-3]
5. lgi1a ENSDARG00000020493 1218 2.515 - 0.742 - - 0.993 - 0.780 - - leucine-rich, glioma inactivated 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1731]
6. nkx6.1 ENSDARG00000022569 3779 2.488 - 0.883 - - - 0.722 0.883 - - NK6 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040718-178]
7. sst1.1 ENSDARG00000040799 677 2.479 - 0.858 - - - 0.786 0.835 - - somatostatin 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4743]
8. TUBB8P7_1 TUBB8P7_1 2722 2.477 - 0.765 - - 0.981 - 0.731 - -
9. neurod4 ENSDARG00000003469, ENSDARG00000117149 1732 2.472 - 0.877 - - - - 0.860 - 0.735 neuronal differentiation 4 [Source:ZFIN;Acc:ZDB-GENE-030730-1]
10. pkd2l1 ENSDARG00000022503 372 2.447 - 0.811 - - - 0.772 0.864 - - polycystic kidney disease 2-like 1 [Source:ZFIN;Acc:ZDB-GENE-030616-558]
11. msi1 ENSDARG00000010710 2634 2.439 - 0.712 - - 0.900 - 0.827 - - musashi RNA-binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050320-86]
12. nrarpb ENSDARG00000018958 6225 2.425 - 0.712 - - 0.913 - 0.800 - - NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
13. ADAMTS3 ENSDARG00000060127 2839 2.416 - 0.839 - - - 0.766 0.811 - - ADAM metallopeptidase with thrombospondin type 1 motif, 3 [Source:ZFIN;Acc:ZDB-GENE-110223-1]
14. gpr98 gpr98 717 2.412 - - - - - 0.718 0.870 0.824 -
15. epha3l epha3l 1441 2.386 0.705 0.849 - - - - 0.832 - -
16. rhbdl3 ENSDARG00000105190, ENSDARG00000112687, ENSDARG00000116222 977 2.377 - 0.792 - - - 0.768 0.817 - - rhomboid, veinlet-like 3 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-050417-2]
17. vsx1 ENSDARG00000056292, ENSDARG00000109766 442 2.301 - 0.723 - - - 0.750 - - 0.828 visual system homeobox 1 homolog, chx10-like [Source:ZFIN;Acc:ZDB-GENE-990415-205]
18. ank2b ENSDARG00000043313 3065 2.272 - 0.793 - - - 0.741 0.738 - - ankyrin 2b, neuronal [Source:ZFIN;Acc:ZDB-GENE-041010-165]
19. zic5 ENSDARG00000016022 1034 1.937 - - - - 0.977 - 0.960 - - zic family member 5 (odd-paired homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040622-1]
20. kera ENSDARG00000056938 2434 1.904 - 0.941 - - 0.963 - - - - keratocan [Source:ZFIN;Acc:ZDB-GENE-041210-165]
21. ccdc28b ENSDARG00000011222 528 1.832 - - - - 0.993 - 0.839 - - coiled-coil domain containing 28B [Source:ZFIN;Acc:ZDB-GENE-060208-3]
22. rfc1 ENSDARG00000054799 1416 1.817 - 0.831 - - 0.986 - - - - replication factor C (activator 1) 1 [Source:ZFIN;Acc:ZDB-GENE-070410-99]
23. zic4 ENSDARG00000031307 1228 1.811 - 0.857 - - - - 0.954 - - zic family member 4 [Source:ZFIN;Acc:ZDB-GENE-040622-4]
24. TUSC5_1 TUSC5_1 320 1.795 - 0.804 - - 0.991 - - - -
25. dpysl2b ENSDARG00000032083, ENSDARG00000109782 3487 1.794 - - - - 0.974 - 0.820 - - dihydropyrimidinase-like 2b [Source:ZFIN;Acc:ZDB-GENE-031105-1]
26. grm2a ENSDARG00000004150 64 1.778 - - - - - 0.802 0.976 - - glutamate receptor, metabotropic 2a [Source:ZFIN;Acc:ZDB-GENE-030131-8097]
27. atp6v0cb ENSDARG00000036577 3472 1.777 - - - - 0.971 - 0.806 - - ATPase H+ transporting V0 subunit cb [Source:ZFIN;Acc:ZDB-GENE-030131-4127]
28. FAM168B ENSDARG00000101733, ENSDARG00000113953, ENSDARG00000115746 2175 1.768 - - - - 0.973 - 0.795 - - family with sequence similarity 168, member B [Source:ZFIN;Acc:ZDB-GENE-060929-180]
29. scg2a 800 1.767 - 0.891 - - - - 0.876 - - secretogranin II (chromogranin C) a
30. UBE2QL1 ENSDARG00000079276 3474 1.743 - - - - 0.984 - 0.759 - - ubiquitin-conjugating enzyme E2Q family-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8137]
31. fabp7a ENSDARG00000007697 5211 1.74 - - - - - 0.780 0.960 - - fatty acid binding protein 7, brain, a [Source:ZFIN;Acc:ZDB-GENE-000627-1]
32. cuedc2 ENSDARG00000039365 484 1.739 0.746 - - - 0.993 - - - - CUE domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6283]
33. dtnbb ENSDARG00000013020 280 1.738 - 0.812 - - - - 0.926 - - dystrobrevin, beta b [Source:ZFIN;Acc:ZDB-GENE-070117-3]
34. odz4 odz4 822 1.736 - - - - 0.989 - 0.747 - -
35. C24H17orf96 C24H17orf96 1538 1.728 - - - - 0.978 - 0.750 - -
36. SYT2 ENSDARG00000014169 265 1.727 - 0.766 - - - - 0.961 - - synaptotagmin 2 [Source:HGNC Symbol;Acc:HGNC:11510]
37. pou3f2b ENSDARG00000076262, ENSDARG00000112713 2439 1.719 - 0.820 - - - - 0.899 - - POU class 3 homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-980526-370]
38. srpk1b ENSDARG00000031560 2079 1.714 - 0.759 - - 0.955 - - - - SRSF protein kinase 1b [Source:ZFIN;Acc:ZDB-GENE-070112-2292]
39. tnika ENSDARG00000056218 728 1.708 - 0.903 - - - - 0.805 - - TRAF2 and NCK interacting kinase a [Source:ZFIN;Acc:ZDB-GENE-030131-3767]
40. crb1 ENSDARG00000100506, ENSDARG00000110621 373 1.696 - 0.912 - - - - 0.784 - - crumbs family member 1, photoreceptor morphogenesis associated [Source:ZFIN;Acc:ZDB-GENE-050208-382]
41. pcsk1nl ENSDARG00000076170 1232 1.695 - 0.910 - - - - 0.785 - - proprotein convertase subtilisin/kexin type 1 inhibitor, like [Source:ZFIN;Acc:ZDB-GENE-090427-2]
42. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 1.692 - - - - 0.973 - - - 0.719 cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
43. nadl1.1 1200 1.687 - 0.916 - - - - 0.771 - - neural adhesion molecule L1.1, transcript variant X1
44. marcksa ENSDARG00000004049 2518 1.687 - - - - 0.953 - 0.734 - - myristoylated alanine-rich protein kinase C substrate a [Source:ZFIN;Acc:ZDB-GENE-050522-145]
45. mnx1 ENSDARG00000035984, ENSDARG00000109419 1014 1.686 - - - - - 0.820 0.866 - - motor neuron and pancreas homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040409-1]
46. atp1b4 ENSDARG00000053262 1337 1.679 0.848 - - - - - 0.831 - - ATPase Na+/K+ transporting subunit beta 4 [Source:ZFIN;Acc:ZDB-GENE-070412-1]
47. slc18a3a ENSDARG00000006356 1285 1.678 - 0.879 - - - - 0.799 - - solute carrier family 18 (vesicular acetylcholine transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-060929-990]
48. myt1b ENSDARG00000102879 5411 1.672 - 0.823 - - - - 0.849 - - myelin transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-090313-67]
49. CU928222.1 ENSDARG00000097436 1662 1.67 - 0.813 - - - - 0.857 - -
50. zgc:113531 ENSDARG00000038794 2063 1.67 - - - - - 0.760 0.910 - - zgc:113531 [Source:ZFIN;Acc:ZDB-GENE-050320-52]
51. syt11a ENSDARG00000057913 1145 1.668 - 0.863 - - - - 0.805 - - synaptotagmin XIa [Source:ZFIN;Acc:ZDB-GENE-040426-2815]
52. ptprn2 ENSDARG00000035970, ENSDARG00000114075 354 1.668 - - - - - 0.845 - 0.823 - protein tyrosine phosphatase, receptor type, N polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-030131-3758]
53. cadm3 ENSDARG00000057013 1545 1.667 - 0.867 - - - - - - 0.800 cell adhesion molecule 3 [Source:ZFIN;Acc:ZDB-GENE-060512-196]
54. urp1 ENSDARG00000093493, ENSDARG00000109394, ENSDARG00000114654 637 1.666 - 0.837 - - - - 0.829 - - urotensin-related peptide 1 [Source:ZFIN;Acc:ZDB-GENE-100922-138]
55. her15.2 her15.2 1701 1.666 - 0.779 - - - - 0.887 - -
56. wu:fc51f04 wu:fc51f04 7074 1.662 - 0.782 - - 0.880 - - - -
57. ptprnb ENSDARG00000077047 2743 1.657 - 0.882 - - - - 0.775 - - protein tyrosine phosphatase, receptor type, Nb [Source:ZFIN;Acc:ZDB-GENE-100505-1]
58. cldn5a ENSDARG00000043716 3865 1.654 - 0.792 - - - - 0.862 - - claudin 5a [Source:ZFIN;Acc:ZDB-GENE-040426-2442]
59. foxa2 ENSDARG00000003411 2309 1.651 - - - - - 0.845 0.806 - - forkhead box A2 [Source:ZFIN;Acc:ZDB-GENE-980526-404]
60. syngr3a ENSDARG00000014871 405 1.65 - 0.833 - - - - 0.817 - - synaptogyrin 3a [Source:ZFIN;Acc:ZDB-GENE-050522-541]
61. jagn1a ENSDARG00000041071, ENSDARG00000109427 397 1.649 - 0.887 - - - - 0.762 - - jagunal homolog 1a [Source:ZFIN;Acc:ZDB-GENE-041010-80]
62. si:ch73-21g5.7 ENSDARG00000093156 9412 1.646 - 0.852 - - - - 0.794 - - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
63. slc1a3a ENSDARG00000104431 9888 1.643 - 0.772 - - - - 0.871 - - solute carrier family 1 (glial high affinity glutamate transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-030131-2159]
64. sox2 ENSDARG00000070913 2763 1.64 - 0.868 - - - - 0.772 - - SRY (sex determining region Y)-box 2 [Source:ZFIN;Acc:ZDB-GENE-030909-1]
65. nkx2.2a ENSDARG00000053298 747 1.64 - 0.776 - - - - 0.864 - - NK2 homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-980526-403]
66. prph ENSDARG00000028306 242 1.64 - 0.828 - - - - 0.812 - - peripherin [Source:ZFIN;Acc:ZDB-GENE-990415-207]
67. dld ENSDARG00000020219 4928 1.639 - 0.781 - - - - 0.858 - - deltaD [Source:ZFIN;Acc:ZDB-GENE-990415-47]
68. mnx2b ENSDARG00000030350 484 1.635 - 0.758 - - - - 0.877 - - motor neuron and pancreas homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-040415-2]
69. stxbp1a ENSDARG00000001994 5154 1.634 - 0.880 - - - - 0.754 - - syntaxin binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-050626-106]
70. pcdh1gc5 ENSDARG00000104826 10052 1.631 - 0.804 - - - - 0.827 - - protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
71. nr2f1a ENSDARG00000052695 5037 1.624 0.769 - - - 0.855 - - - - nuclear receptor subfamily 2, group F, member 1a [Source:ZFIN;Acc:ZDB-GENE-980526-115]
72. cntn4 ENSDARG00000098161, ENSDARG00000109387 437 1.621 - 0.899 - - - - 0.722 - - contactin 4 [Source:ZFIN;Acc:ZDB-GENE-060929-776]
73. ctnnd2b ENSDARG00000003779 964 1.62 - 0.791 - - - - 0.829 - - catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]
74. pkd1b ENSDARG00000033029 461 1.619 - - - - - 0.858 0.761 - - polycystic kidney disease 1b [Source:ZFIN;Acc:ZDB-GENE-100707-2]
75. CLIP3 ENSDARG00000054456 734 1.616 - 0.711 - - - - 0.905 - - CAP-GLY domain containing linker protein 3 [Source:ZFIN;Acc:ZDB-GENE-131127-193]
76. nova2 ENSDARG00000017673 7685 1.615 - 0.792 - - - - 0.823 - - neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
77. DHX32 DHX32 181 1.615 - - - - - 0.789 0.826 - -
78. tac3a ENSDARG00000093089, ENSDARG00000110723 75 1.613 - - - - - 0.754 0.859 - - tachykinin 3a [Source:ZFIN;Acc:ZDB-GENE-090313-253]
79. nes ENSDARG00000088805 2710 1.611 - 0.806 - - - - 0.805 - - nestin [Source:ZFIN;Acc:ZDB-GENE-071119-2]
80. CABZ01080599.2 CABZ01080599.2 192 1.61 - - - - - 0.741 0.869 - -
81. ek1 ENSDARG00000020080 742 1.609 - 0.815 - - - - 0.794 - - eph-like kinase 1 [Source:ZFIN;Acc:ZDB-GENE-990415-58]
82. stx1b ENSDARG00000000503 2724 1.608 - 0.896 - - - - 0.712 - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
83. mapk12b ENSDARG00000006409 2246 1.604 - 0.842 - - - - 0.762 - - mitogen-activated protein kinase 12b [Source:ZFIN;Acc:ZDB-GENE-041210-123]
84. tmem240 tmem240 180 1.603 - - - - - 0.716 0.887 - -
85. SLC5A7 SLC5A7 453 1.602 - 0.839 - - - - 0.763 - -
86. gng3 ENSDARG00000009553 2530 1.6 - 0.791 - - - - 0.809 - - guanine nucleotide binding protein (G protein), gamma 3 [Source:ZFIN;Acc:ZDB-GENE-010705-1]
87. lrrn1 ENSDARG00000060115, ENSDARG00000115960 5175 1.599 - - - - 0.792 - 0.807 - - leucine rich repeat neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-071126-1]
88. calm1a ENSDARG00000021811 4791 1.597 - - - - 0.886 - 0.711 - - calmodulin 1a [Source:ZFIN;Acc:ZDB-GENE-030131-8308]
89. CU658147.1 CU658147.1 69 1.597 - 0.731 - - - - 0.866 - -
90. atp2b3b ENSDARG00000023445 1424 1.596 - 0.791 - - - - 0.805 - - ATPase plasma membrane Ca2+ transporting 3b [Source:ZFIN;Acc:ZDB-GENE-080409-2]
91. meis2b ENSDARG00000077840 5166 1.595 - - - - 0.833 - 0.762 - - Meis homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-000210-23]
92. irx1b ENSDARG00000056594 2224 1.595 - 0.741 - - - - 0.854 - - iroquois homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-010716-1]
93. islr2 ENSDARG00000051875, ENSDARG00000109523 2288 1.593 - - - - - 0.748 0.845 - - immunoglobulin superfamily containing leucine-rich repeat 2 [Source:ZFIN;Acc:ZDB-GENE-050320-95]
94. atp1a1b ENSDARG00000019856, ENSDARG00000115121 1953 1.593 - 0.747 - - - - 0.846 - - ATPase Na+/K+ transporting subunit alpha 1b [Source:ZFIN;Acc:ZDB-GENE-001212-5]
95. hpca ENSDARG00000018397, ENSDARG00000110115 3866 1.589 - 0.825 - - - - 0.764 - - hippocalcin [Source:ZFIN;Acc:ZDB-GENE-040426-1683]
96. gpm6aa ENSDARG00000055455, ENSDARG00000110942 9156 1.588 - 0.774 - - - - 0.814 - - glycoprotein M6Aa [Source:ZFIN;Acc:ZDB-GENE-030710-7]
97. tmem35 ENSDARG00000052567 5685 1.587 - - - - 0.744 - 0.843 - - transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
98. sox21b ENSDARG00000008540 1460 1.586 - 0.802 - - - - 0.784 - - SRY (sex determining region Y)-box 21b [Source:ZFIN;Acc:ZDB-GENE-040429-1]
99. cacna2d3 ENSDARG00000078760 211 1.584 - 0.787 - - - - 0.797 - - calcium channel, voltage dependent, alpha2/delta subunit 3 [Source:ZFIN;Acc:ZDB-GENE-030616-133]
100. atp1b2a ENSDARG00000099203 4010 1.581 - 0.832 - - - - 0.749 - - ATPase Na+/K+ transporting subunit beta 2a [Source:ZFIN;Acc:ZDB-GENE-001127-2]

There are 1357 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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