Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for sox18

Gene Name Gene ID Reads Annotation
sox18 ENSDARG00000058598 678 SRY (sex determining region Y)-box 18 [Source:ZFIN;Acc:ZDB-GENE-080725-1]










Genes with expression patterns similar to sox18

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. sox18 ENSDARG00000058598 678 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SRY (sex determining region Y)-box 18 [Source:ZFIN;Acc:ZDB-GENE-080725-1]
2. CABZ01018247.1 CABZ01018247.1 609 3.228 0.878 0.787 - - - 0.707 0.856 - -
3. vsg1 1870 3.088 0.797 0.705 - - - 0.774 0.812 - - vessel-specific 1
4. gpr182 ENSDARG00000036616 455 3.073 0.800 0.826 - - - 0.718 0.729 - - G protein-coupled receptor 182 [Source:ZFIN;Acc:ZDB-GENE-030131-2361]
5. ecscr ENSDARG00000087457 319 2.538 0.932 - - - - 0.800 0.806 - - endothelial cell surface expressed chemotaxis and apoptosis regulator [Source:ZFIN;Acc:ZDB-GENE-050411-37]
6. clec14a ENSDARG00000103533 718 2.444 0.845 - - - - 0.798 0.801 - - C-type lectin domain containing 14A [Source:ZFIN;Acc:ZDB-GENE-030131-5536]
7. mrc1a ENSDARG00000102100 1260 2.406 0.864 - - - - 0.723 0.819 - - mannose receptor, C type 1a [Source:ZFIN;Acc:ZDB-GENE-090915-4]
8. prcp ENSDARG00000037883 473 2.354 0.817 - - - - 0.800 0.737 - - prolylcarboxypeptidase (angiotensinase C) [Source:ZFIN;Acc:ZDB-GENE-040718-447]
9. col8a2 ENSDARG00000060893 504 2.252 0.810 0.703 - - - - 0.739 - - collagen, type VIII, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-060503-488]
10. tgfb1b ENSDARG00000034895 608 1.775 0.900 0.875 - - - - - - - transforming growth factor, beta 1b [Source:ZFIN;Acc:ZDB-GENE-091028-1]
11. cdh5 ENSDARG00000075549 2288 1.733 0.882 - - - - - 0.851 - - cadherin 5 [Source:ZFIN;Acc:ZDB-GENE-040816-1]
12. tie1 ENSDARG00000004105 400 1.692 0.857 - - - - - 0.835 - - tyrosine kinase with immunoglobulin-like and EGF-like domains 1 [Source:ZFIN;Acc:ZDB-GENE-990415-55]
13. CABZ01080142.1 CABZ01080142.1 52 1.685 0.908 - - - - - 0.777 - -
14. cxcl12b ENSDARG00000055100, ENSDARG00000113088 4476 1.68 - - - - - 0.825 0.855 - - chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1) [Source:ZFIN;Acc:ZDB-GENE-030721-1]
15. exoc3l2a ENSDARG00000008414 227 1.659 - - - - - 0.838 0.821 - - exocyst complex component 3-like 2a [Source:ZFIN;Acc:ZDB-GENE-060526-343]
16. aplnrb ENSDARG00000036670 546 1.643 0.828 - - - - 0.815 - - - apelin receptor b [Source:ZFIN;Acc:ZDB-GENE-050913-90]
17. lmo2 ENSDARG00000095019 1098 1.598 0.773 - - - - - 0.825 - - LIM domain only 2 (rhombotin-like 1) [Source:ZFIN;Acc:ZDB-GENE-980526-419]
18. foxc1a ENSDARG00000091481 1059 1.582 - 0.765 - - - - 0.817 - - forkhead box C1a [Source:ZFIN;Acc:ZDB-GENE-010302-1]
19. fli1a ENSDARG00000054632 330 1.569 0.770 - - - - - 0.799 - - Fli-1 proto-oncogene, ETS transcription factor a [Source:ZFIN;Acc:ZDB-GENE-980526-426]
20. she ENSDARG00000087956 941 1.567 - - - - - 0.712 0.855 - - Src homology 2 domain containing E [Source:ZFIN;Acc:ZDB-GENE-090915-6]
21. stab2 ENSDARG00000045748, ENSDARG00000111479 2952 1.554 0.734 - - - - - 0.820 - - stabilin 2 [Source:ZFIN;Acc:ZDB-GENE-041210-336]
22. fli1b ENSDARG00000040080 348 1.553 - - - - - 0.849 0.704 - - Fli-1 proto-oncogene, ETS transcription factor b [Source:ZFIN;Acc:ZDB-GENE-031114-3]
23. CR391997.1 CR391997.1 62 1.551 0.832 0.719 - - - - - - -
24. etv2 ENSDARG00000053868 715 1.539 - 0.811 - - - 0.728 - - - ets variant 2 [Source:ZFIN;Acc:ZDB-GENE-050622-14]
25. gp1bb ENSDARG00000074441 116 1.536 0.721 0.815 - - - - - - - glycoprotein Ib platelet subunit beta [Source:ZFIN;Acc:ZDB-GENE-081104-406]
26. sele ENSDARG00000009123 122 1.536 0.721 0.815 - - - - - - - selectin E [Source:ZFIN;Acc:ZDB-GENE-041014-221]
27. C8H9orf116 C8H9orf116 379 1.519 - 0.805 - - - 0.714 - - -
28. il13ra2 ENSDARG00000039436, ENSDARG00000111925 286 1.496 - 0.709 - - - - 0.787 - - interleukin 13 receptor, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030521-10]
29. PXMP4 ENSDARG00000114885 212 1.478 - 0.736 - - - - 0.742 - - peroxisomal membrane protein 4 [Source:HGNC Symbol;Acc:HGNC:15920]
30. scn4bb ENSDARG00000060319, ENSDARG00000112427 63 1.462 0.721 - - - - - 0.741 - - sodium channel, voltage-gated, type IV, beta b [Source:ZFIN;Acc:ZDB-GENE-031116-71]
31. CR847543.1 ENSDARG00000086708 155 1.461 0.721 - - - - 0.740 - - -
32. irgq2 ENSDARG00000068657 4 1.461 0.721 - - - - 0.740 - - - immunity-related GTPase family, q2 [Source:ZFIN;Acc:ZDB-GENE-051212-7]
33. si:dkey-261h17.1 ENSDARG00000095268 11403 1.458 0.744 - - - - - 0.714 - - si:dkey-261h17.1 [Source:ZFIN;Acc:ZDB-GENE-030829-14]
34. SNORA54 SNORA54 232 1.446 - - - - - 0.730 0.716 - -
35. cacng6b ENSDARG00000046079 258 1.444 0.703 - - - - - 0.741 - - calcium channel, voltage-dependent, gamma subunit 6b [Source:ZFIN;Acc:ZDB-GENE-100922-272]
36. cyp26b1 ENSDARG00000077121 1364 0.933 0.933 - - - - - - - - cytochrome P450, family 26, subfamily b, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2908]
37. hsd17b3 ENSDARG00000023287, ENSDARG00000115935, ENSDARG00000116671 134 0.924 - - - - - 0.924 - - - hydroxysteroid (17-beta) dehydrogenase 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1339]
38. foxj1b ENSDARG00000088290 343 0.921 - - - - - 0.921 - - - forkhead box J1b [Source:ZFIN;Acc:ZDB-GENE-041212-76]
39. slc26a1 ENSDARG00000029832 328 0.92 - - - - - 0.920 - - - solute carrier family 26 (anion exchanger), member 1 [Source:ZFIN;Acc:ZDB-GENE-070112-2182]
40. si:rp71-17i16.6 ENSDARG00000095453 167 0.916 - - - - - 0.916 - - - si:rp71-17i16.6 [Source:ZFIN;Acc:ZDB-GENE-090313-410]
41. si:dkey-25o16.2 1990 0.913 - - - - - 0.913 - - - si:dkey-25o16.2, transcript variant X1
42. aak1 aak1 81 0.912 0.912 - - - - - - - -
43. mylka ENSDARG00000034801 133 0.911 - 0.911 - - - - - - - myosin, light chain kinase a [Source:ZFIN;Acc:ZDB-GENE-030131-8207]
44. tnfaip2b ENSDARG00000058160 622 0.906 - - - - - 0.906 - - - tumor necrosis factor, alpha-induced protein 2b [Source:ZFIN;Acc:ZDB-GENE-081107-56]
45. NTN5 ENSDARG00000036422 371 0.897 0.897 - - - - - - - - netrin 5 [Source:ZFIN;Acc:ZDB-GENE-130530-593]
46. gfi1aa ENSDARG00000020746 30 0.897 0.897 - - - - - - - - growth factor independent 1A transcription repressor a [Source:ZFIN;Acc:ZDB-GENE-050522-534]
47. cox5b2 ENSDARG00000068738 182 0.896 - 0.896 - - - - - - - cytochrome c oxidase subunit 5B2 [Source:ZFIN;Acc:ZDB-GENE-060825-71]
48. ndufaf6 ENSDARG00000053652 351 0.892 - - - - - - 0.892 - - NADH:ubiquinone oxidoreductase complex assembly factor 6 [Source:ZFIN;Acc:ZDB-GENE-100112-1]
49. pttg1 ENSDARG00000075421 166 0.891 - 0.891 - - - - - - - pituitary tumor-transforming 1 [Source:ZFIN;Acc:ZDB-GENE-081104-345]
50. NFRKB ENSDARG00000091512 646 0.891 - 0.891 - - - - - - - nuclear factor related to kappaB binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-6419]
51. fkbp10a ENSDARG00000099183 314 0.885 - 0.885 - - - - - - - FK506 binding protein 10a [Source:ZFIN;Acc:ZDB-GENE-100921-75]
52. mrps9 ENSDARG00000061505 1636 0.885 - - - - - - 0.885 - - mitochondrial ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-060825-257]
53. pam16 ENSDARG00000102822 860 0.885 - 0.885 - - - - - - - presequence translocase associated motor 16 [Source:ZFIN;Acc:ZDB-GENE-040426-1776]
54. si:ch1073-291c23.2 ENSDARG00000074869 585 0.884 - - - - - - 0.884 - - si:ch1073-291c23.2 [Source:ZFIN;Acc:ZDB-GENE-081107-2]
55. dnal4a ENSDARG00000031116, ENSDARG00000117095 411 0.884 - 0.884 - - - - - - - dynein, axonemal, light chain 4a [Source:ZFIN;Acc:ZDB-GENE-040801-122]
56. ppa2 ENSDARG00000009685 209 0.883 - 0.883 - - - - - - - pyrophosphatase (inorganic) 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1857]
57. pdzk1 ENSDARG00000022261 398 0.883 - - - - - 0.883 - - - PDZ domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-031222-1]
58. mfsd4b ENSDARG00000079571 556 0.883 - - - - - 0.883 - - - major facilitator superfamily domain containing 4B [Source:ZFIN;Acc:ZDB-GENE-070410-26]
59. SMAD4_1 SMAD4_1 377 0.883 - - - - - - 0.883 - -
60. tpcn1 ENSDARG00000062362 563 0.88 - - - - - - 0.880 - - two pore segment channel 1 [Source:ZFIN;Acc:ZDB-GENE-060526-199]
61. ggctb ENSDARG00000005085 704 0.877 - - - - - - 0.877 - - gamma-glutamylcyclotransferase b [Source:ZFIN;Acc:ZDB-GENE-040426-1939]
62. foxf1 ENSDARG00000015399 205 0.876 0.876 - - - - - - - - forkhead box F1 [Source:ZFIN;Acc:ZDB-GENE-050419-153]
63. VPS37B ENSDARG00000039319, ENSDARG00000109293 150 0.875 - 0.875 - - - - - - - vacuolar protein sorting 37 homolog B (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060526-254]
64. SLC47A1_1 SLC47A1_1 130 0.874 - - - - - 0.874 - - -
65. si:ch73-334d15.2 ENSDARG00000087020 441 0.871 0.871 - - - - - - - - si:ch73-334d15.2 [Source:ZFIN;Acc:ZDB-GENE-091204-158]
66. nras ENSDARG00000038225 450 0.87 - 0.870 - - - - - - - NRAS proto-oncogene, GTPase [Source:ZFIN;Acc:ZDB-GENE-990415-166]
67. gtdc2 gtdc2 523 0.868 - 0.868 - - - - - - -
68. c1qtnf6a ENSDARG00000055175 335 0.867 - - - - - 0.867 - - - C1q and TNF related 6a [Source:ZFIN;Acc:ZDB-GENE-080108-3]
69. ptn ENSDARG00000102340 229 0.864 - 0.864 - - - - - - - pleiotrophin [Source:ZFIN;Acc:ZDB-GENE-030624-1]
70. si:dkey-261j4.3 ENSDARG00000035151 156 0.861 - - - - - - 0.861 - - si:dkey-261j4.3 [Source:ZFIN;Acc:ZDB-GENE-060531-124]
71. LMAN2L LMAN2L 555 0.86 - 0.860 - - - - - - -
72. hmha1 hmha1 58 0.858 - - - - - - 0.858 - -
73. egfl7 ENSDARG00000100657 776 0.857 - - - - - - 0.857 - - EGF-like-domain, multiple 7 [Source:ZFIN;Acc:ZDB-GENE-040429-2]
74. cluap1 ENSDARG00000079110 280 0.857 - 0.857 - - - - - - - clusterin associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1943]
75. si:ch73-299h12.3 ENSDARG00000101790 590 0.855 - - - - - - 0.855 - - si:ch73-299h12.3 [Source:ZFIN;Acc:ZDB-GENE-081031-93]
76. socs8 socs8 128 0.854 - 0.854 - - - - - - -
77. rnf44 ENSDARG00000068582 1612 0.852 - 0.852 - - - - - - - ring finger protein 44 [Source:ZFIN;Acc:ZDB-GENE-060929-604]
78. CAMK2G CAMK2G 3537 0.85 - 0.850 - - - - - - -
79. dusp5 ENSDARG00000019307, ENSDARG00000110831 476 0.85 - - - - - - 0.850 - - dual specificity phosphatase 5 [Source:ZFIN;Acc:ZDB-GENE-010625-1]
80. kdelc1 ENSDARG00000031971, ENSDARG00000109619, ENSDARG00000112803 249 0.849 - 0.849 - - - - - - - KDEL (Lys-Asp-Glu-Leu) containing 1 [Source:ZFIN;Acc:ZDB-GENE-040426-878]
81. trdmt1 ENSDARG00000034518 169 0.847 - - - - - - 0.847 - - tRNA aspartic acid methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-041008-138]
82. ampd1 ENSDARG00000033832 221 0.846 - - - - - 0.846 - - - adenosine monophosphate deaminase 1 (isoform M) [Source:ZFIN;Acc:ZDB-GENE-040426-1906]
83. slc26a6 ENSDARG00000055835, ENSDARG00000097292 66 0.846 - - - - - 0.846 - - - solute carrier family 26, member 6 [Source:ZFIN;Acc:ZDB-GENE-081105-83]
84. SBK1 SBK1 154 0.843 - 0.843 - - - - - - -
85. adra1d ENSDARG00000024101 387 0.842 - - - - - 0.842 - - - adrenoceptor alpha 1D [Source:ZFIN;Acc:ZDB-GENE-090312-203]
86. ATP5SL ATP5SL 130 0.842 - 0.842 - - - - - - -
87. plek ENSDARG00000104325 21 0.841 - - - - - 0.841 - - - pleckstrin [Source:ZFIN;Acc:ZDB-GENE-040426-1506]
88. mre11a ENSDARG00000105014 278 0.841 - 0.841 - - - - - - - MRE11 homolog A, double strand break repair nuclease [Source:ZFIN;Acc:ZDB-GENE-040426-2638]
89. inpp5d ENSDARG00000074283, ENSDARG00000116834 12 0.841 - - - - - 0.841 - - - inositol polyphosphate-5-phosphatase D [Source:ZFIN;Acc:ZDB-GENE-100922-30]
90. RAB19 83 0.841 - 0.841 - - - - - - - RAB19, member RAS oncogene family
91. si:ch211-113e8.9 ENSDARG00000095065 33 0.84 - - - - - 0.840 - - - si:ch211-113e8.9 [Source:ZFIN;Acc:ZDB-GENE-090313-14]
92. mfng ENSDARG00000042925 104 0.839 0.839 - - - - - - - - MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:ZFIN;Acc:ZDB-GENE-041130-1]
93. si:dkey-222o15.5 si:dkey-222o15.5 27 0.839 0.839 - - - - - - - -
94. si:ch1073-185p12.2 ENSDARG00000100199 7 0.839 0.839 - - - - - - - - si:ch1073-185p12.2 [Source:ZFIN;Acc:ZDB-GENE-110411-196]
95. nmt1b ENSDARG00000057206 654 0.838 - - - - - 0.838 - - - N-myristoyltransferase 1b [Source:ZFIN;Acc:ZDB-GENE-081222-3]
96. FASN ENSDARG00000087657 18 0.837 - - - - - - 0.837 - - fatty acid synthase [Source:ZFIN;Acc:ZDB-GENE-030131-7802]
97. aqp1a.1 ENSDARG00000023713 3237 0.837 0.837 - - - - - - - - aquaporin 1a (Colton blood group), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7764]
98. RSBN1 RSBN1 599 0.837 - - - - - - 0.837 - -
99. CT573348.1 CT573348.1 37 0.835 - - - - - - 0.835 - -
100. rnf175 ENSDARG00000037647 1233 0.835 - 0.835 - - - - - - - ring finger protein 175 [Source:ZFIN;Acc:ZDB-GENE-040426-1104]

There are 796 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA