Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for smn1

Gene Name Gene ID Reads Annotation
smn1 ENSDARG00000018494 1024 survival of motor neuron 1, telomeric [Source:ZFIN;Acc:ZDB-GENE-990715-16]










Genes with expression patterns similar to smn1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. smn1 ENSDARG00000018494 1024 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 survival of motor neuron 1, telomeric [Source:ZFIN;Acc:ZDB-GENE-990715-16]
2. CR548630.1 CR548630.1 3301 2.69 - 0.901 - 0.809 0.980 - - - -
3. edc4 ENSDARG00000062266, ENSDARG00000114070 2505 2.487 - - - 0.807 0.974 - 0.706 - - enhancer of mRNA decapping 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5032]
4. loxl2b ENSDARG00000044074 1919 1.869 - 0.899 - - 0.970 - - - - lysyl oxidase-like 2b [Source:ZFIN;Acc:ZDB-GENE-050208-29]
5. gabpa ENSDARG00000069289, ENSDARG00000110923 1536 1.846 - 0.866 - - 0.980 - - - - GA binding protein transcription factor subunit alpha [Source:ZFIN;Acc:ZDB-GENE-011010-2]
6. tbl1x ENSDARG00000060438 1386 1.823 - - - - 0.981 - 0.842 - - transducin beta like 1 X-linked [Source:ZFIN;Acc:ZDB-GENE-070209-131]
7. nol9 ENSDARG00000077751 2471 1.809 - 0.840 - - 0.969 - - - - nucleolar protein 9 [Source:ZFIN;Acc:ZDB-GENE-070629-1]
8. larp7 ENSDARG00000017315 1194 1.805 - - - 0.816 0.989 - - - - La ribonucleoprotein domain family, member 7 [Source:ZFIN;Acc:ZDB-GENE-030131-6896]
9. aldh16a1 ENSDARG00000037935 617 1.804 - 0.822 - - 0.982 - - - - aldehyde dehydrogenase 16 family, member A1 [Source:ZFIN;Acc:ZDB-GENE-070112-2062]
10. zic5 ENSDARG00000016022 1034 1.784 - 0.805 - - 0.979 - - - - zic family member 5 (odd-paired homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040622-1]
11. tom1l2 ENSDARG00000009217, ENSDARG00000111492 1639 1.784 - - - - 0.972 - 0.812 - - target of myb1 like 2 membrane trafficking protein [Source:ZFIN;Acc:ZDB-GENE-061013-3]
12. BX005008.2 BX005008.2 708 1.761 - 0.772 - - 0.989 - - - -
13. nuf2 ENSDARG00000034624 2252 1.761 - 0.794 - - 0.967 - - - - NUF2, NDC80 kinetochore complex component, homolog [Source:ZFIN;Acc:ZDB-GENE-040426-1121]
14. txlna ENSDARG00000077037 2614 1.725 - 0.746 - - 0.979 - - - - taxilin alpha [Source:ZFIN;Acc:ZDB-GENE-030131-2900]
15. FBXO33 ENSDARG00000075400 1164 1.715 - 0.730 - - 0.985 - - - - F-box protein 33 [Source:ZFIN;Acc:ZDB-GENE-100618-2]
16. lrrn1 ENSDARG00000060115, ENSDARG00000115960 5175 1.71 - 0.913 - - 0.797 - - - - leucine rich repeat neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-071126-1]
17. smo ENSDARG00000002952 6411 1.706 - - - 0.725 0.981 - - - - smoothened, frizzled class receptor [Source:ZFIN;Acc:ZDB-GENE-980526-89]
18. zgc:113442 ENSDARG00000101906 3092 1.704 - 0.739 - - 0.965 - - - - zgc:113442 [Source:ZFIN;Acc:ZDB-GENE-050227-2]
19. tab1 ENSDARG00000036613 445 1.698 - 0.713 - - 0.985 - - - - TGF-beta activated kinase 1/MAP3K7 binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-060628-1]
20. h1fx ENSDARG00000054058 4075 1.691 - 0.737 - - 0.954 - - - - H1 histone family, member X [Source:ZFIN;Acc:ZDB-GENE-030131-1228]
21. rhogc ENSDARG00000028401 2671 1.682 - - - 0.710 0.972 - - - - ras homolog gene family, member Gc [Source:ZFIN;Acc:ZDB-GENE-030131-3402]
22. h2afx ENSDARG00000029406 2116 1.673 - - - 0.719 0.954 - - - - H2A histone family, member X [Source:ZFIN;Acc:ZDB-GENE-040426-987]
23. prdm10 ENSDARG00000104251 510 1.667 - 0.807 - - - - 0.860 - - PR domain containing 10 [Source:ZFIN;Acc:ZDB-GENE-050419-74]
24. marcksa ENSDARG00000004049 2518 1.667 - - - 0.723 0.944 - - - - myristoylated alanine-rich protein kinase C substrate a [Source:ZFIN;Acc:ZDB-GENE-050522-145]
25. zzz3 ENSDARG00000077581 1343 1.665 - 0.901 - 0.764 - - - - - zinc finger, ZZ-type containing 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6450]
26. tubg1 ENSDARG00000015610 2433 1.628 0.772 0.856 - - - - - - - tubulin, gamma 1 [Source:ZFIN;Acc:ZDB-GENE-040426-836]
27. zdhhc6 ENSDARG00000075721 1494 1.627 - 0.867 - 0.760 - - - - - zinc finger, DHHC-type containing 6 [Source:ZFIN;Acc:ZDB-GENE-030131-3189]
28. igbp1 ENSDARG00000002184, ENSDARG00000117141 879 1.627 - - 0.818 0.809 - - - - - immunoglobulin (CD79A) binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2928]
29. ube2e2 ENSDARG00000034670 5918 1.621 - - - 0.762 0.859 - - - - ubiquitin-conjugating enzyme E2E 2 [Source:ZFIN;Acc:ZDB-GENE-040801-237]
30. crfb12 ENSDARG00000052413 47 1.617 0.778 0.839 - - - - - - - cytokine receptor family member B12 [Source:ZFIN;Acc:ZDB-GENE-060421-4184]
31. epb41l4a ENSDARG00000040087 1013 1.617 - 0.875 - 0.742 - - - - - erythrocyte membrane protein band 4.1 like 4A [Source:ZFIN;Acc:ZDB-GENE-990415-20]
32. tdrd3 ENSDARG00000025421 633 1.615 - 0.863 - 0.752 - - - - - tudor domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-040426-19]
33. smndc1 ENSDARG00000056235, ENSDARG00000117084 3509 1.614 - 0.735 - - 0.879 - - - - survival motor neuron domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-614]
34. cxxc1 cxxc1 914 1.614 - 0.855 - 0.759 - - - - -
35. rbmx2 ENSDARG00000044380, ENSDARG00000115698 2528 1.612 - - - 0.854 - 0.758 - - - RNA binding motif protein X-linked 2 [Source:ZFIN;Acc:ZDB-GENE-050626-88]
36. usp1 ENSDARG00000056414 1816 1.605 - 0.833 - 0.772 - - - - - ubiquitin specific peptidase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-726]
37. ldb1a ENSDARG00000010137 3035 1.602 - 0.888 - 0.714 - - - - - LIM domain binding 1a [Source:ZFIN;Acc:ZDB-GENE-990415-138]
38. endog ENSDARG00000058865 679 1.598 0.732 0.866 - - - - - - - endonuclease G [Source:ZFIN;Acc:ZDB-GENE-050522-402]
39. lhfp 700 1.59 - 0.872 - - - - 0.718 - - lipoma HMGIC fusion partner
40. dus4l ENSDARG00000006567 261 1.578 - 0.830 - - - - 0.748 - - dihydrouridine synthase 4-like (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040801-233]
41. rac3b ENSDARG00000020795 1523 1.571 - 0.839 - 0.732 - - - - - Rac family small GTPase 3b [Source:ZFIN;Acc:ZDB-GENE-080220-21]
42. zdhhc17 ENSDARG00000070441 1073 1.569 - 0.815 - 0.754 - - - - - zinc finger, DHHC-type containing 17 [Source:ZFIN;Acc:ZDB-GENE-070424-194]
43. bbs4 ENSDARG00000063522 247 1.569 - 0.837 - 0.732 - - - - - Bardet-Biedl syndrome 4 [Source:ZFIN;Acc:ZDB-GENE-060126-2]
44. PARD3B PARD3B 401 1.567 - 0.820 - 0.747 - - - - -
45. uchl5 ENSDARG00000103404, ENSDARG00000110434 4029 1.555 - 0.801 - 0.754 - - - - - ubiquitin carboxyl-terminal hydrolase L5 [Source:ZFIN;Acc:ZDB-GENE-040426-2051]
46. bnip3la ENSDARG00000025468 3097 1.549 - 0.793 - - - - 0.756 - - BCL2 interacting protein 3 like a [Source:ZFIN;Acc:ZDB-GENE-030131-2283]
47. usp42 ENSDARG00000077300 926 1.544 0.756 - - 0.788 - - - - - ubiquitin specific peptidase 42 [Source:ZFIN;Acc:ZDB-GENE-030131-5739]
48. anapc7 ENSDARG00000063005 1139 1.543 - - 0.723 0.820 - - - - - anaphase promoting complex subunit 7 [Source:ZFIN;Acc:ZDB-GENE-081104-113]
49. ncor1 ENSDARG00000035285, ENSDARG00000113129 4234 1.54 - 0.832 - - - - 0.708 - - nuclear receptor corepressor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-993]
50. fam151b ENSDARG00000020024 255 1.538 - - - 0.740 - - 0.798 - - family with sequence similarity 151, member B [Source:ZFIN;Acc:ZDB-GENE-040801-38]
51. WAPAL WAPAL 1888 1.533 - 0.816 - 0.717 - - - - -
52. egr2a ENSDARG00000044098 1101 1.523 0.745 - - 0.778 - - - - - early growth response 2a [Source:ZFIN;Acc:ZDB-GENE-030723-6]
53. znf710a ENSDARG00000014680 582 1.521 - 0.756 - 0.765 - - - - - zinc finger protein 710a [Source:ZFIN;Acc:ZDB-GENE-030131-5559]
54. atrnl1b ENSDARG00000006420 641 1.498 0.730 - - 0.768 - - - - - attractin-like 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8092]
55. NHSL1 NHSL1 182 1.497 - - 0.730 0.767 - - - - -
56. ttc13 ENSDARG00000063242 1360 1.49 0.746 0.744 - - - - - - - tetratricopeptide repeat domain 13 [Source:ZFIN;Acc:ZDB-GENE-080722-25]
57. supt20 ENSDARG00000078658 713 1.49 - - - 0.754 - - 0.736 - - SPT20 homolog, SAGA complex component [Source:ZFIN;Acc:ZDB-GENE-091204-264]
58. phf21ab ENSDARG00000021378 1706 1.467 - 0.744 - - 0.723 - - - - PHD finger protein 21Ab [Source:ZFIN;Acc:ZDB-GENE-030131-6456]
59. NDST1 NDST1 1584 1.463 - - - 0.726 - - 0.737 - -
60. BX927290.1 BX927290.1 389 1.455 - - - 0.700 - - 0.755 - -
61. gadd45g gadd45g 510 1.442 - - - 0.731 - - 0.711 - -
62. tm9sf3 ENSDARG00000028748, ENSDARG00000111288 4546 1.441 - 0.737 - - - - 0.704 - - transmembrane 9 superfamily member 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2714]
63. sf3b3_1 ENSDARG00000103553 1191 1.424 - 0.718 0.706 - - - - - - splicing factor 3b, subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2901]
64. MUM1L1 MUM1L1 968 1.423 0.723 - - - - - 0.700 - -
65. pip5k1bb ENSDARG00000006508 2812 0.992 - - - - 0.992 - - - - phosphatidylinositol-4-phosphate 5-kinase, type I, beta b [Source:ZFIN;Acc:ZDB-GENE-040912-141]
66. toporsb ENSDARG00000105028 1898 0.992 - - - - 0.992 - - - - topoisomerase I binding, arginine/serine-rich b [Source:ZFIN;Acc:ZDB-GENE-110728-3]
67. SENP1 SENP1 1122 0.991 - - - - 0.991 - - - -
68. rfc1 ENSDARG00000054799 1416 0.991 - - - - 0.991 - - - - replication factor C (activator 1) 1 [Source:ZFIN;Acc:ZDB-GENE-070410-99]
69. lgi1a ENSDARG00000020493 1218 0.991 - - - - 0.991 - - - - leucine-rich, glioma inactivated 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1731]
70. ercc6 ENSDARG00000075612 1175 0.99 - - - - 0.990 - - - - excision repair cross-complementation group 6 [Source:ZFIN;Acc:ZDB-GENE-070228-1]
71. cuedc2 ENSDARG00000039365 484 0.99 - - - - 0.990 - - - - CUE domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6283]
72. pfkpb ENSDARG00000012801 223 0.989 - - - - 0.989 - - - - phosphofructokinase, platelet b [Source:ZFIN;Acc:ZDB-GENE-070912-634]
73. lrch2 ENSDARG00000075580, ENSDARG00000116418 255 0.989 - - - - 0.989 - - - - leucine-rich repeats and calponin homology (CH) domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-080114-1]
74. tmem88a ENSDARG00000056920 536 0.989 - - - - 0.989 - - - - transmembrane protein 88 a [Source:ZFIN;Acc:ZDB-GENE-040426-1808]
75. msh2 ENSDARG00000018022, ENSDARG00000115185 1301 0.989 - - - - 0.989 - - - - mutS homolog 2 (E. coli) [Source:ZFIN;Acc:ZDB-GENE-040426-2932]
76. slc2a15b ENSDARG00000053269 899 0.989 - - - - 0.989 - - - - solute carrier family 2 (facilitated glucose transporter), member 15b [Source:ZFIN;Acc:ZDB-GENE-050508-1]
77. ccdc28b ENSDARG00000011222 528 0.989 - - - - 0.989 - - - - coiled-coil domain containing 28B [Source:ZFIN;Acc:ZDB-GENE-060208-3]
78. ccr10 ENSDARG00000040643 255 0.989 - - - - 0.989 - - - - chemokine (C-C motif) receptor 10 [Source:ZFIN;Acc:ZDB-GENE-040718-424]
79. lin54 ENSDARG00000063194 2583 0.989 - - - - 0.989 - - - - lin-54 DREAM MuvB core complex component [Source:ZFIN;Acc:ZDB-GENE-060929-440]
80. FOXL2 239 0.989 - - - - 0.989 - - - - forkhead box L2, transcript variant X1
81. gorab ENSDARG00000042031 483 0.989 - - - - 0.989 - - - - golgin, rab6-interacting [Source:ZFIN;Acc:ZDB-GENE-040426-1384]
82. fam193b ENSDARG00000102831 442 0.988 - - - - 0.988 - - - - family with sequence similarity 193, member B [Source:ZFIN;Acc:ZDB-GENE-111102-1]
83. dopey1 438 0.988 - - - - 0.988 - - - - dopey family member 1, transcript variant X4
84. ago4 ENSDARG00000100854 496 0.988 - - - - 0.988 - - - - argonaute RISC catalytic component 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5357]
85. atxn7l3 ENSDARG00000029331 531 0.988 - - - - 0.988 - - - - ataxin 7-like 3 [Source:ZFIN;Acc:ZDB-GENE-030616-253]
86. wdr24 ENSDARG00000025507 505 0.988 - - - - 0.988 - - - - WD repeat domain 24 [Source:ZFIN;Acc:ZDB-GENE-040426-2012]
87. sox1a ENSDARG00000069866, ENSDARG00000110682, ENSDARG00000114571 576 0.988 - - - - 0.988 - - - - SRY (sex determining region Y)-box 1a [Source:ZFIN;Acc:ZDB-GENE-040718-186]
88. aatf ENSDARG00000025467, ENSDARG00000109548 796 0.988 - - - - 0.988 - - - - apoptosis antagonizing transcription factor [Source:ZFIN;Acc:ZDB-GENE-030131-9654]
89. myl2b ENSDARG00000053424 226 0.988 - - - - 0.988 - - - - myosin, light chain 2b, regulatory, cardiac, slow [Source:ZFIN;Acc:ZDB-GENE-060331-137]
90. med13b ENSDARG00000003910 1143 0.988 - - - - 0.988 - - - - mediator complex subunit 13b [Source:ZFIN;Acc:ZDB-GENE-030131-3529]
91. nefma ENSDARG00000021351 790 0.988 - - - - 0.988 - - - - neurofilament, medium polypeptide a [Source:ZFIN;Acc:ZDB-GENE-050522-205]
92. aspg ENSDARG00000052942 1406 0.988 - - - - 0.988 - - - - asparaginase homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-070820-14]
93. lig4 ENSDARG00000060620 369 0.988 - - - - 0.988 - - - - ligase IV, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-070820-10]
94. smurf1 ENSDARG00000016086 878 0.988 - - - - 0.988 - - - - SMAD specific E3 ubiquitin protein ligase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2744]
95. exoc3l4 ENSDARG00000058180 923 0.988 - - - - 0.988 - - - - exocyst complex component 3-like 4 [Source:ZFIN;Acc:ZDB-GENE-081028-71]
96. atp2a2a ENSDARG00000029439 940 0.987 - - - - 0.987 - - - - ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2a [Source:ZFIN;Acc:ZDB-GENE-040426-702]
97. clu ENSDARG00000010434 498 0.987 - - - - 0.987 - - - - clusterin [Source:ZFIN;Acc:ZDB-GENE-040426-1774]
98. odz4 odz4 822 0.987 - - - - 0.987 - - - -
99. UBE2QL1 ENSDARG00000079276 3474 0.987 - - - - 0.987 - - - - ubiquitin-conjugating enzyme E2Q family-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8137]
100. spag7 ENSDARG00000011555 3224 0.987 - - - - 0.987 - - - - sperm associated antigen 7 [Source:ZFIN;Acc:ZDB-GENE-040426-1632]

There are 1311 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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