Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for smim12

Gene Name Gene ID Reads Annotation
smim12 ENSDARG00000070358 895 small integral membrane protein 12 [Source:ZFIN;Acc:ZDB-GENE-050320-101]










Genes with expression patterns similar to smim12

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. smim12 ENSDARG00000070358 895 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 small integral membrane protein 12 [Source:ZFIN;Acc:ZDB-GENE-050320-101]
2. CU633479.5 ENSDARG00000114818 1815 1.702 - 0.894 - - - 0.808 - - -
3. MYOM3 2720 1.59 - 0.828 - - - 0.762 - - - myomesin 3, transcript variant X2
4. mmp14a ENSDARG00000002235 911 1.567 0.779 - - - - - 0.788 - - matrix metallopeptidase 14a (membrane-inserted) [Source:ZFIN;Acc:ZDB-GENE-030901-1]
5. sgsh ENSDARG00000032087 294 1.564 0.824 0.740 - - - - - - - N-sulfoglucosamine sulfohydrolase (sulfamidase) [Source:ZFIN;Acc:ZDB-GENE-030131-4958]
6. myog ENSDARG00000009438 2368 1.555 - 0.779 - - - 0.776 - - - myogenin [Source:ZFIN;Acc:ZDB-GENE-980526-265]
7. ntmt1 ENSDARG00000022399 5779 1.549 - 0.776 - - - 0.773 - - - N-terminal Xaa-Pro-Lys N-methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2055]
8. timm13 ENSDARG00000058297 4447 1.546 - 0.763 - - - 0.783 - - - translocase of inner mitochondrial membrane 13 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040718-167]
9. dnajc11 1939 1.535 - 0.790 - - - - 0.745 - - DnaJ heat shock protein family (Hsp40) member C11
10. snapc3 ENSDARG00000101474 367 1.533 0.748 0.785 - - - - - - - small nuclear RNA activating complex, polypeptide 3 [Source:ZFIN;Acc:ZDB-GENE-040426-971]
11. ecsit ENSDARG00000062834 896 1.521 - 0.819 - - - - 0.702 - - ECSIT signalling integrator [Source:ZFIN;Acc:ZDB-GENE-030131-1332]
12. tsfm ENSDARG00000060748, ENSDARG00000110047 1003 1.511 - - - 0.781 - 0.730 - - - Ts translation elongation factor, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-061215-17]
13. DLGAP4 DLGAP4 443 1.497 0.796 - - - - - - 0.701 -
14. timm9 ENSDARG00000043865 2456 1.483 - 0.729 - - - 0.754 - - - translocase of inner mitochondrial membrane 9 homolog [Source:ZFIN;Acc:ZDB-GENE-021206-14]
15. rpap1 ENSDARG00000075072, ENSDARG00000117161 250 1.481 0.753 - - - - - 0.728 - - RNA polymerase II associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-090914-1]
16. rnf141 ENSDARG00000041802, ENSDARG00000113109 531 1.478 0.748 - - - - 0.730 - - - ring finger protein 141 [Source:ZFIN;Acc:ZDB-GENE-040625-71]
17. ehbp1l1b ENSDARG00000079895 559 1.465 - 0.751 - 0.714 - - - - - EH domain binding protein 1-like 1b [Source:ZFIN;Acc:ZDB-GENE-091204-238]
18. senp6a ENSDARG00000102923 908 1.46 0.725 0.735 - - - - - - - SUMO specific peptidase 6a [Source:ZFIN;Acc:ZDB-GENE-080204-25]
19. txlnbb ENSDARG00000076241 6396 1.448 - 0.732 - - - 0.716 - - - taxilin beta b [Source:ZFIN;Acc:ZDB-GENE-070424-77]
20. BX927164.2 BX927164.2 279 1.445 - 0.713 - - - 0.732 - - -
21. mapre3b ENSDARG00000102878 362 1.444 - 0.709 - - - 0.735 - - - microtubule-associated protein, RP/EB family, member 3b [Source:ZFIN;Acc:ZDB-GENE-040704-6]
22. txnipb ENSDARG00000070000 2365 1.441 - 0.737 - - - 0.704 - - - thioredoxin interacting protein b [Source:ZFIN;Acc:ZDB-GENE-040917-1]
23. ndufa5 ENSDARG00000039346 2617 1.44 - - - - - 0.714 0.726 - - NADH:ubiquinone oxidoreductase subunit A5 [Source:ZFIN;Acc:ZDB-GENE-050320-17]
24. sars ENSDARG00000008237 3330 1.439 - 0.702 - - - 0.737 - - - seryl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-040831-1]
25. lnpa ENSDARG00000063646, ENSDARG00000115902 2373 1.437 - 0.730 - - - 0.707 - - - limb and neural patterns a [Source:ZFIN;Acc:ZDB-GENE-030131-4960]
26. TMEM55B_1 TMEM55B_1 495 1.434 0.710 0.724 - - - - - - -
27. RAB33A ENSDARG00000057394, ENSDARG00000115279 380 0.92 - 0.920 - - - - - - - RAB33A, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-060825-283]
28. PRIMPOL ENSDARG00000033273, ENSDARG00000111555 918 0.918 0.918 - - - - - - - - primase and polymerase (DNA-directed) [Source:ZFIN;Acc:ZDB-GENE-051113-100]
29. st14b ENSDARG00000044655 415 0.906 0.906 - - - - - - - - suppression of tumorigenicity 14 (colon carcinoma) b [Source:ZFIN;Acc:ZDB-GENE-061103-613]
30. pld1b ENSDARG00000057125 325 0.904 0.904 - - - - - - - - phospholipase D1b [Source:ZFIN;Acc:ZDB-GENE-070510-3]
31. neil3 ENSDARG00000020079, ENSDARG00000111296 397 0.897 0.897 - - - - - - - - nei-like DNA glycosylase 3 [Source:ZFIN;Acc:ZDB-GENE-041114-18]
32. dexi ENSDARG00000055474 468 0.894 - 0.894 - - - - - - - Dexi homolog (mouse) [Source:ZFIN;Acc:ZDB-GENE-040808-20]
33. cilp ENSDARG00000053362 1429 0.892 - 0.892 - - - - - - - cartilage intermediate layer protein, nucleotide pyrophosphohydrolase [Source:ZFIN;Acc:ZDB-GENE-050208-76]
34. si:dkeyp-75b4.9 ENSDARG00000015678 36 0.888 0.888 - - - - - - - - si:dkeyp-75b4.9 [Source:ZFIN;Acc:ZDB-GENE-090313-396]
35. MCOLN3_1 MCOLN3_1 192 0.886 0.886 - - - - - - - -
36. adra2a ENSDARG00000040841, ENSDARG00000111717, ENSDARG00000114002 44 0.885 0.885 - - - - - - - - adrenoceptor alpha 2A [Source:ZFIN;Acc:ZDB-GENE-021010-1]
37. spry2 ENSDARG00000078308 1200 0.884 0.884 - - - - - - - - sprouty RTK signaling antagonist 2 [Source:ZFIN;Acc:ZDB-GENE-030131-7038]
38. zdhhc4 ENSDARG00000045159, ENSDARG00000117124 625 0.884 0.884 - - - - - - - - zinc finger, DHHC-type containing 4 [Source:ZFIN;Acc:ZDB-GENE-030131-9031]
39. epb41b ENSDARG00000029019 1472 0.883 - 0.883 - - - - - - - erythrocyte membrane protein band 4.1b [Source:ZFIN;Acc:ZDB-GENE-030130-1]
40. baz2a ENSDARG00000102974 266 0.879 - 0.879 - - - - - - - bromodomain adjacent to zinc finger domain, 2A [Source:ZFIN;Acc:ZDB-GENE-041010-202]
41. RPS6KA5 ENSDARG00000060551 109 0.873 0.873 - - - - - - - - ribosomal protein S6 kinase, polypeptide 5 [Source:ZFIN;Acc:ZDB-GENE-130530-693]
42. tmsb ENSDARG00000054911 6411 0.871 - 0.871 - - - - - - - thymosin, beta [Source:ZFIN;Acc:ZDB-GENE-050307-5]
43. GPR161 ENSDARG00000055659 1067 0.869 - 0.869 - - - - - - - G protein-coupled receptor 161 [Source:ZFIN;Acc:ZDB-GENE-030616-58]
44. ranbp3 ranbp3 1009 0.866 - 0.866 - - - - - - -
45. clip1a ENSDARG00000078722 677 0.865 0.865 - - - - - - - - CAP-GLY domain containing linker protein 1a [Source:ZFIN;Acc:ZDB-GENE-060526-282]
46. cnp ENSDARG00000070822 649 0.862 0.862 - - - - - - - - 2',3'-cyclic nucleotide 3' phosphodiesterase [Source:ZFIN;Acc:ZDB-GENE-030521-29]
47. si:ch211-266d19.4 ENSDARG00000012642 1251 0.861 - - - - - - 0.861 - - si:ch211-266d19.4 [Source:ZFIN;Acc:ZDB-GENE-091204-74]
48. hmbsb ENSDARG00000055991 3037 0.861 - 0.861 - - - - - - - hydroxymethylbilane synthase, b [Source:ZFIN;Acc:ZDB-GENE-050522-491]
49. bora ENSDARG00000042688, ENSDARG00000112916 402 0.86 - - - - - - - 0.860 - bora, aurora kinase A activator [Source:ZFIN;Acc:ZDB-GENE-041114-165]
50. si:ch211-66k16.28 ENSDARG00000088423 80 0.858 0.858 - - - - - - - - si:ch211-66k16.28 [Source:ZFIN;Acc:ZDB-GENE-120709-59]
51. rft1 ENSDARG00000060398 146 0.858 0.858 - - - - - - - - RFT1 homolog [Source:ZFIN;Acc:ZDB-GENE-110411-126]
52. ccdc88b ENSDARG00000076189 123 0.856 0.856 - - - - - - - - coiled-coil domain containing 88B [Source:ZFIN;Acc:ZDB-GENE-080303-31]
53. reep3l reep3l 608 0.854 0.854 - - - - - - - -
54. afg3l2 ENSDARG00000062272 864 0.854 - 0.854 - - - - - - - AFG3-like AAA ATPase 2 [Source:ZFIN;Acc:ZDB-GENE-070912-46]
55. zgc:171759_2 ENSDARG00000100259, ENSDARG00000109737, ENSDARG00000111964, ENSDARG00000114195, ENSDARG00000115938 48 0.853 0.853 - - - - - - - - zgc:171759 [Source:ZFIN;Acc:ZDB-GENE-071004-32]
56. vasna ENSDARG00000099266, ENSDARG00000111629 488 0.852 0.852 - - - - - - - - vasorin a [Source:ZFIN;Acc:ZDB-GENE-050522-43]
57. MRPL21 ENSDARG00000003846 3244 0.851 - 0.851 - - - - - - - mitochondrial ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-061027-183]
58. rnf6 ENSDARG00000077955 442 0.85 0.850 - - - - - - - - ring finger protein (C3H2C3 type) 6 [Source:ZFIN;Acc:ZDB-GENE-100209-1]
59. malt1a malt1a 903 0.847 0.847 - - - - - - - -
60. igsf9b ENSDARG00000010408 786 0.846 0.846 - - - - - - - - immunoglobulin superfamily, member 9b [Source:ZFIN;Acc:ZDB-GENE-060810-28]
61. zgc:103508 ENSDARG00000099273 50 0.846 0.846 - - - - - - - - zgc:103508 [Source:ZFIN;Acc:ZDB-GENE-041212-28]
62. prkrip1 ENSDARG00000033126, ENSDARG00000113803 1634 0.845 - 0.845 - - - - - - - PRKR interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-111011-2]
63. smtnl ENSDARG00000055632, ENSDARG00000109489 788 0.845 - 0.845 - - - - - - - smoothelin, like [Source:ZFIN;Acc:ZDB-GENE-040212-1]
64. tph1b ENSDARG00000036082, ENSDARG00000112888 79 0.844 0.844 - - - - - - - - tryptophan hydroxylase 1b [Source:ZFIN;Acc:ZDB-GENE-030805-6]
65. zgc:162184 ENSDARG00000077217 47 0.844 0.844 - - - - - - - - zgc:162184 [Source:ZFIN;Acc:ZDB-GENE-070424-83]
66. UBL7 UBL7 197 0.843 0.843 - - - - - - - -
67. hbbe2 ENSDARG00000045143, ENSDARG00000109554 5244 0.842 - 0.842 - - - - - - - hemoglobin beta embryonic-2 [Source:ZFIN;Acc:ZDB-GENE-040702-1]
68. hbae1_1 37308 0.842 - 0.842 - - - - - - - hemoglobin, alpha embryonic 1
69. RLIM ENSDARG00000079306 514 0.842 - - - - - - 0.842 - - ring finger protein, LIM domain interacting [Source:ZFIN;Acc:ZDB-GENE-120809-2]
70. ftr51 ENSDARG00000029105 103 0.84 0.840 - - - - - - - - finTRIM family, member 51 [Source:ZFIN;Acc:ZDB-GENE-081104-54]
71. si:dkey-11f4.14 ENSDARG00000098461 35 0.84 0.840 - - - - - - - - si:dkey-11f4.14 [Source:ZFIN;Acc:ZDB-GENE-070912-355]
72. RIN2 ENSDARG00000074589 255 0.839 - 0.839 - - - - - - - Ras and Rab interactor 2 [Source:ZFIN;Acc:ZDB-GENE-090312-194]
73. ZNF784_4 ZNF784_4 113 0.839 0.839 - - - - - - - -
74. mtmr6 ENSDARG00000016794 425 0.839 0.839 - - - - - - - - myotubularin related protein 6 [Source:ZFIN;Acc:ZDB-GENE-030131-5557]
75. mrpl46 ENSDARG00000016307 613 0.838 - 0.838 - - - - - - - mitochondrial ribosomal protein L46 [Source:ZFIN;Acc:ZDB-GENE-040718-224]
76. LPHN3 LPHN3 195 0.837 0.837 - - - - - - - -
77. CU638740.1_1 CU638740.1_1 387 0.835 - - - - - 0.835 - - -
78. matr3l1.1_1 ENSDARG00000000394, ENSDARG00000001162 1860 0.835 - 0.835 - - - - - - - matrin 3-like 1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-40]
79. pdhx ENSDARG00000051756 924 0.835 - 0.835 - - - - - - - pyruvate dehydrogenase complex, component X [Source:ZFIN;Acc:ZDB-GENE-040426-1539]
80. FMN1_2 FMN1_2 305 0.835 0.835 - - - - - - - -
81. ccdc113 ENSDARG00000006981 67 0.835 0.835 - - - - - - - - coiled-coil domain containing 113 [Source:ZFIN;Acc:ZDB-GENE-041010-163]
82. si:ch73-249k16.1 si:ch73-249k16.1 36 0.835 0.835 - - - - - - - -
83. stat6 ENSDARG00000015902, ENSDARG00000115859 377 0.835 0.835 - - - - - - - - signal transducer and activator of transcription 6, interleukin-4 induced [Source:ZFIN;Acc:ZDB-GENE-030131-9359]
84. opn1sw2 ENSDARG00000017274, ENSDARG00000115330 37 0.835 0.835 - - - - - - - - opsin 1 (cone pigments), short-wave-sensitive 2 [Source:ZFIN;Acc:ZDB-GENE-990604-40]
85. slc30a10 ENSDARG00000103983 46 0.834 0.834 - - - - - - - - solute carrier family 30, member 10 [Source:ZFIN;Acc:ZDB-GENE-060608-2]
86. MYOM1 MYOM1 3870 0.834 - 0.834 - - - - - - -
87. has3 ENSDARG00000057210, ENSDARG00000116537 108 0.834 0.834 - - - - - - - - hyaluronan synthase 3 [Source:ZFIN;Acc:ZDB-GENE-021118-1]
88. fam84a ENSDARG00000018921 375 0.834 - 0.834 - - - - - - - family with sequence similarity 84, member A [Source:ZFIN;Acc:ZDB-GENE-040426-1247]
89. flt4 ENSDARG00000104453 557 0.834 0.834 - - - - - - - - fms-related tyrosine kinase 4 [Source:ZFIN;Acc:ZDB-GENE-980526-326]
90. creb5b ENSDARG00000070536 9 0.833 0.833 - - - - - - - - cAMP responsive element binding protein 5b [Source:ZFIN;Acc:ZDB-GENE-091020-6]
91. TAF1C TAF1C 41 0.833 0.833 - - - - - - - -
92. foxq1b ENSDARG00000055395 549 0.833 0.833 - - - - - - - - forkhead box Q1b [Source:ZFIN;Acc:ZDB-GENE-040426-2090]
93. lysmd3 ENSDARG00000024693 754 0.833 - - - - - - - 0.833 - LysM, putative peptidoglycan-binding, domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-040625-88]
94. dusp12 ENSDARG00000076330 173 0.832 - 0.832 - - - - - - - dual specificity phosphatase 12 [Source:ZFIN;Acc:ZDB-GENE-050626-91]
95. CABZ01045618.2 CABZ01045618.2 1663 0.832 - 0.832 - - - - - - -
96. ube2g1a ENSDARG00000015292, ENSDARG00000112281 3207 0.832 - 0.832 - - - - - - - ubiquitin-conjugating enzyme E2G 1a (UBC7 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-6065]
97. hira ENSDARG00000013434 2204 0.832 - 0.832 - - - - - - - histone cell cycle regulator a [Source:ZFIN;Acc:ZDB-GENE-030131-6296]
98. slc25a5 ENSDARG00000092553 626 0.831 - - - - - 0.831 - - - solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 [Source:ZFIN;Acc:ZDB-GENE-020419-9]
99. kif11 ENSDARG00000010948 4973 0.831 0.831 - - - - - - - - kinesin family member 11 [Source:ZFIN;Acc:ZDB-GENE-020426-1]
100. MRPS36 ENSDARG00000079823, ENSDARG00000113427 3694 0.831 - - - - - 0.831 - - - mitochondrial ribosomal protein S36 [Source:ZFIN;Acc:ZDB-GENE-081104-343]

There are 767 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA