Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for smg7

Gene Name Gene ID Reads Annotation
smg7 ENSDARG00000060767 2759 SMG7 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-030131-9122]










Genes with expression patterns similar to smg7

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. smg7 ENSDARG00000060767 2759 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SMG7 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-030131-9122]
2. tmem50a ENSDARG00000015757 3244 2.679 - - - - - 0.917 0.879 0.883 - transmembrane protein 50A [Source:ZFIN;Acc:ZDB-GENE-040426-2937]
3. yipf4 ENSDARG00000030957, ENSDARG00000109994 4665 2.524 - - - - - 0.909 0.726 0.889 - Yip1 domain family, member 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2253]
4. samm50l ENSDARG00000039681 2465 2.513 - - - - 0.936 0.816 0.761 - - sorting and assembly machinery component 50 homolog, like [Source:ZFIN;Acc:ZDB-GENE-041114-30]
5. sbds ENSDARG00000027803 846 2.508 - 0.803 - - - 0.822 - 0.883 - SBDS, ribosome maturation factor [Source:ZFIN;Acc:ZDB-GENE-040426-1116]
6. cx30.3 ENSDARG00000042707, ENSDARG00000116331 2399 2.46 - - 0.728 - - 0.921 - 0.811 - connexin 30.3 [Source:ZFIN;Acc:ZDB-GENE-040406-1]
7. psmd8 ENSDARG00000020454 6645 2.438 - - - - - 0.873 0.737 0.828 - proteasome 26S subunit, non-ATPase 8 [Source:ZFIN;Acc:ZDB-GENE-040625-136]
8. U2_6 U2_6 1155 2.431 - 0.808 - - - 0.913 0.710 - -
9. smarca5 ENSDARG00000052348 15433 2.391 - - - - - - 0.814 0.842 0.735 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 [Source:ZFIN;Acc:ZDB-GENE-021125-1]
10. lbr ENSDARG00000014013 4835 2.371 - - - - - - 0.755 0.880 0.736 lamin B receptor [Source:ZFIN;Acc:ZDB-GENE-030804-11]
11. atrx ENSDARG00000042236, ENSDARG00000112921, ENSDARG00000116878 7922 2.317 - - - 0.768 - 0.804 0.745 - - alpha thalassemia/mental retardation syndrome X-linked homolog (human) [Source:ZFIN;Acc:ZDB-GENE-030912-11]
12. sf1 ENSDARG00000008188 5142 2.279 - - - 0.718 - - 0.819 - 0.742 splicing factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2492]
13. prkar1aa ENSDARG00000076128 6565 2.247 - - - - - 0.730 0.767 0.750 - protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) a [Source:ZFIN;Acc:ZDB-GENE-050116-2]
14. ndc1 ENSDARG00000021120 2417 2.241 - 0.738 - 0.733 - - 0.770 - - NDC1 transmembrane nucleoporin [Source:ZFIN;Acc:ZDB-GENE-030131-7176]
15. usp7 ENSDARG00000073710 7017 2.195 - - - - - 0.702 0.732 - 0.761 ubiquitin specific peptidase 7 (herpes virus-associated) [Source:ZFIN;Acc:ZDB-GENE-030131-3656]
16. dhfr ENSDARG00000004251 1824 2.185 - 0.740 0.742 0.703 - - - - - dihydrofolate reductase [Source:ZFIN;Acc:ZDB-GENE-010406-5]
17. bcl11ab ENSDARG00000063153 3032 2.144 - - - 0.733 - - 0.705 - 0.706 B cell CLL/lymphoma 11Ab [Source:ZFIN;Acc:ZDB-GENE-061009-4]
18. smurf2 ENSDARG00000038067 2057 1.904 - - - - 0.963 0.941 - - - SMAD specific E3 ubiquitin protein ligase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1830]
19. arhgap29b ENSDARG00000017748 812 1.898 - - - - 0.952 0.946 - - - Rho GTPase activating protein 29b [Source:ZFIN;Acc:ZDB-GENE-031010-44]
20. polb ENSDARG00000003749 2049 1.846 - - - - 0.959 - - 0.887 - polymerase (DNA directed), beta [Source:ZFIN;Acc:ZDB-GENE-040830-1]
21. nop10 ENSDARG00000104227 2463 1.829 - - - - 0.941 - - 0.888 - NOP10 ribonucleoprotein homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-041007-4]
22. btbd10b ENSDARG00000020252 7251 1.825 - - - - 0.955 - - 0.870 - BTB (POZ) domain containing 10b [Source:ZFIN;Acc:ZDB-GENE-080104-5]
23. ccnb1 ENSDARG00000051923 3226 1.808 - - - - 0.978 0.830 - - - cyclin B1 [Source:ZFIN;Acc:ZDB-GENE-000406-10]
24. rngtt ENSDARG00000032261 833 1.781 - - - - - 0.887 - 0.894 - RNA guanylyltransferase and 5'-phosphatase [Source:ZFIN;Acc:ZDB-GENE-040426-2087]
25. CABZ01003826.1_1 CABZ01003826.1_1 1154 1.781 - - - - 0.960 0.821 - - -
26. KIF1A KIF1A 1686 1.776 - - - - 0.954 0.822 - - -
27. PACS1 PACS1 2061 1.771 - 0.806 - - 0.965 - - - -
28. phf16 phf16 1116 1.77 - - - - 0.960 - 0.810 - -
29. pik3r3b ENSDARG00000034409, ENSDARG00000113215, ENSDARG00000117028 3213 1.77 - - - - 0.945 - - 0.825 - phosphoinositide-3-kinase, regulatory subunit 3b (gamma) [Source:ZFIN;Acc:ZDB-GENE-040426-743]
30. usf2 ENSDARG00000020228 2667 1.769 - - - - 0.972 0.797 - - - upstream transcription factor 2, c-fos interacting [Source:ZFIN;Acc:ZDB-GENE-030131-8475]
31. dpysl3 ENSDARG00000002587 4381 1.763 - - - - 0.953 - - 0.810 - dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
32. srsf3a ENSDARG00000025397, ENSDARG00000100815 11622 1.751 - - - - 0.936 - 0.815 - - serine/arginine-rich splicing factor 3a [Source:ZFIN;Acc:ZDB-GENE-030616-631]
33. edf1 ENSDARG00000009950 10518 1.749 - - - - 0.922 - - 0.827 - endothelial differentiation-related factor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1710]
34. ogt.1 ENSDARG00000099455, ENSDARG00000105243 3274 1.743 - - - - - - 0.830 0.913 - O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9631]
35. tuft1b ENSDARG00000071010 909 1.736 - - - - 0.963 0.773 - - - tuftelin 1b [Source:ZFIN;Acc:ZDB-GENE-060503-150]
36. brd8 ENSDARG00000025071 2605 1.735 - - - - 0.949 0.786 - - - bromodomain containing 8 [Source:ZFIN;Acc:ZDB-GENE-030722-10]
37. brd7 ENSDARG00000008380 3654 1.731 - - 0.765 - 0.966 - - - - bromodomain containing 7 [Source:ZFIN;Acc:ZDB-GENE-040426-2687]
38. LAMTOR4 ENSDARG00000045542 1181 1.731 - - - - - 0.948 0.783 - - late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 [Source:ZFIN;Acc:ZDB-GENE-030131-7438]
39. sepsecs ENSDARG00000033861 478 1.729 - - - - 0.963 - 0.766 - - Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase [Source:ZFIN;Acc:ZDB-GENE-040426-859]
40. cldnb ENSDARG00000009544 6036 1.728 - - - - - 0.882 - 0.846 - claudin b [Source:ZFIN;Acc:ZDB-GENE-010328-2]
41. FUCA1 FUCA1 1446 1.719 - - - - - 0.872 - 0.847 -
42. nus1 ENSDARG00000027813 1417 1.719 - 0.828 - - - 0.891 - - - NUS1, dehydrodolichyl diphosphate synthase subunit [Source:ZFIN;Acc:ZDB-GENE-040718-48]
43. itsn1 ENSDARG00000000086 684 1.717 - - 0.776 - - 0.941 - - - intersectin 1 (SH3 domain protein) [Source:ZFIN;Acc:ZDB-GENE-030616-226]
44. cdc20 ENSDARG00000100741 3264 1.712 - - - - - 0.885 0.827 - - cell division cycle 20 homolog [Source:ZFIN;Acc:ZDB-GENE-040426-2044]
45. si:dkey-19e4.5 ENSDARG00000089886 2562 1.711 - - - - 0.980 - 0.731 - - si:dkey-19e4.5 [Source:ZFIN;Acc:ZDB-GENE-030131-1852]
46. ppil2 ENSDARG00000002016, ENSDARG00000116167 914 1.703 - - 0.765 - - 0.938 - - - peptidylprolyl isomerase (cyclophilin)-like 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1096]
47. rybpa ENSDARG00000037773 904 1.702 - - - - 0.964 - - - 0.738 RING1 and YY1 binding protein a [Source:ZFIN;Acc:ZDB-GENE-030424-3]
48. dhx9 ENSDARG00000079725 1241 1.699 - - - - 0.954 - - - 0.745 DEAH (Asp-Glu-Ala-His) box helicase 9 [Source:ZFIN;Acc:ZDB-GENE-070912-171]
49. gnao1b ENSDARG00000036058, ENSDARG00000112730 1951 1.694 - - - - 0.969 - 0.725 - - guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O, b [Source:ZFIN;Acc:ZDB-GENE-040426-1693]
50. si:dkey-117n7.5 ENSDARG00000089640 452 1.692 - 0.781 - - - 0.911 - - - si:dkey-117n7.5 [Source:ZFIN;Acc:ZDB-GENE-060503-331]
51. C2CD2 ENSDARG00000105000 2573 1.691 - - 0.757 - - 0.934 - - - C2 calcium-dependent domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-110728-1]
52. neo1 neo1 4056 1.691 - 0.788 - - - - - 0.903 -
53. pwp2h ENSDARG00000037109 1395 1.689 - 0.740 - - 0.949 - - - - PWP2 periodic tryptophan protein homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-021031-3]
54. fam177a1 ENSDARG00000079636 2391 1.689 - - - - - 0.933 0.756 - - family with sequence similarity 177, member A1 [Source:ZFIN;Acc:ZDB-GENE-070928-21]
55. tefb ENSDARG00000098103 370 1.689 - - - - - 0.905 0.784 - - thyrotrophic embryonic factor b [Source:ZFIN;Acc:ZDB-GENE-050522-224]
56. igfbp5b ENSDARG00000025348 3803 1.687 - 0.852 - - - - - 0.835 - insulin-like growth factor binding protein 5b [Source:ZFIN;Acc:ZDB-GENE-040319-2]
57. cdkn2aipnl ENSDARG00000053395 5107 1.687 - - - 0.728 0.959 - - - - CDKN2A interacting protein N-terminal like [Source:ZFIN;Acc:ZDB-GENE-041010-154]
58. mxd3 ENSDARG00000098350 3040 1.686 - - - - - 0.921 - - 0.765 MAX dimerization protein 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1588]
59. ezh2 ENSDARG00000010571 3273 1.685 - - - - 0.941 - - - 0.744 enhancer of zeste 2 polycomb repressive complex 2 subunit [Source:ZFIN;Acc:ZDB-GENE-041111-259]
60. coa5 ENSDARG00000094833 1988 1.685 - - - - - 0.903 0.782 - - cytochrome C oxidase assembly factor 5 [Source:ZFIN;Acc:ZDB-GENE-060825-53]
61. cyth1a ENSDARG00000005159, ENSDARG00000076742 2796 1.685 - - - - - 0.856 - 0.829 - cytohesin 1a [Source:ZFIN;Acc:ZDB-GENE-030131-657]
62. arpc4 ENSDARG00000054063 6150 1.683 - - - - 0.869 0.814 - - - actin related protein 2/3 complex, subunit 4 [Source:ZFIN;Acc:ZDB-GENE-010724-9]
63. zc3h7b 2936 1.679 - - - - - - 0.803 0.876 - zinc finger CCCH-type containing 7B
64. ppp1cb ENSDARG00000044153 4748 1.679 - - - - 0.937 0.742 - - - protein phosphatase 1, catalytic subunit, beta isozyme [Source:ZFIN;Acc:ZDB-GENE-030616-609]
65. si:dkey-92i15.4 ENSDARG00000078387 428 1.678 - - 0.772 - - 0.906 - - - si:dkey-92i15.4 [Source:ZFIN;Acc:ZDB-GENE-030131-8422]
66. rbm17 ENSDARG00000031346 2079 1.677 - - - - 0.947 0.730 - - - RNA binding motif protein 17 [Source:ZFIN;Acc:ZDB-GENE-040426-817]
67. ndufa4 ENSDARG00000056108, ENSDARG00000116304 2355 1.676 - - - - 0.930 - 0.746 - - NADH:ubiquinone oxidoreductase subunit A4 [Source:ZFIN;Acc:ZDB-GENE-040426-1962]
68. ppig ENSDARG00000044431 3427 1.674 - - - - - 0.780 0.894 - - peptidylprolyl isomerase G (cyclophilin G) [Source:ZFIN;Acc:ZDB-GENE-040426-2822]
69. elp5 ENSDARG00000067918 541 1.671 - - - - - 0.943 0.728 - - elongator acetyltransferase complex subunit 5 [Source:ZFIN;Acc:ZDB-GENE-061215-33]
70. bcar1 ENSDARG00000056525 6563 1.667 - - - - - 0.875 0.792 - - BCAR1, Cas family scaffold protein [Source:ZFIN;Acc:ZDB-GENE-030131-2774]
71. nsfb ENSDARG00000038991, ENSDARG00000109915 1443 1.665 - - - - - 0.925 0.740 - - N-ethylmaleimide-sensitive factor b [Source:ZFIN;Acc:ZDB-GENE-050808-1]
72. kazald3 ENSDARG00000053509 513 1.663 - 0.776 - - - - - 0.887 - Kazal-type serine peptidase inhibitor domain 3 [Source:ZFIN;Acc:ZDB-GENE-050208-155]
73. hdac3 ENSDARG00000037514, ENSDARG00000110316 1985 1.661 - - - - - 0.825 - 0.836 - histone deacetylase 3 [Source:ZFIN;Acc:ZDB-GENE-040426-847]
74. epn2 ENSDARG00000008377 5458 1.661 - - 0.721 - - 0.940 - - - epsin 2 [Source:ZFIN;Acc:ZDB-GENE-071212-1]
75. sirt2 ENSDARG00000011488 5389 1.656 - - 0.712 - 0.944 - - - - sirtuin 2 (silent mating type information regulation 2, homolog) 2 (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-1028]
76. wdfy4 ENSDARG00000077009 802 1.654 - - - - - 0.774 - 0.880 - WDFY family member 4 [Source:ZFIN;Acc:ZDB-GENE-090313-322]
77. zgc:175214 ENSDARG00000022891 1013 1.653 - - - - - 0.948 0.705 - - zgc:175214 [Source:ZFIN;Acc:ZDB-GENE-080303-32]
78. pbx2 ENSDARG00000019717 6892 1.653 - - - - 0.891 0.762 - - - pre-B-cell leukemia homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-000405-5]
79. fkbp7 ENSDARG00000010962 2986 1.653 - - - - 0.881 - - 0.772 - FK506 binding protein 7 [Source:ZFIN;Acc:ZDB-GENE-030616-182]
80. actn1 ENSDARG00000007219 2919 1.651 - - - - - 0.841 - 0.810 - actinin, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-081113-4]
81. myeov2 3351 1.65 - - - - - 0.888 0.762 - - myeloma overexpressed 2
82. tmem53 ENSDARG00000038789 411 1.65 - - - - - 0.909 0.741 - - transmembrane protein 53 [Source:ZFIN;Acc:ZDB-GENE-040718-384]
83. peli1b ENSDARG00000044083, ENSDARG00000112797 3801 1.649 - - - - 0.924 - - - 0.725 pellino E3 ubiquitin protein ligase 1b [Source:ZFIN;Acc:ZDB-GENE-061027-372]
84. dpp3 ENSDARG00000020676 2393 1.646 - - - - - 0.772 - 0.874 - dipeptidyl-peptidase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-1247]
85. safb ENSDARG00000020467 5608 1.645 - - - - - 0.901 - - 0.744 scaffold attachment factor B [Source:ZFIN;Acc:ZDB-GENE-030131-698]
86. brd1b ENSDARG00000051798 1712 1.644 - - - - - 0.922 - - 0.722 bromodomain containing 1b [Source:ZFIN;Acc:ZDB-GENE-070209-98]
87. si:ch73-266f23.1 ENSDARG00000095135, ENSDARG00000105728 1338 1.639 - - 0.937 - - - 0.702 - - si:ch73-266f23.1 [Source:ZFIN;Acc:ZDB-GENE-110913-180]
88. phf3 ENSDARG00000034768 1372 1.638 - - - - - - 0.757 0.881 - PHD finger protein 3 [Source:ZFIN;Acc:ZDB-GENE-090313-207]
89. spcs1 ENSDARG00000059298 5327 1.638 - - - - - 0.906 0.732 - - signal peptidase complex subunit 1 [Source:ZFIN;Acc:ZDB-GENE-050809-130]
90. si:ch211-191j22.3 ENSDARG00000095459 959 1.637 - - - - - 0.823 0.814 - - si:ch211-191j22.3 [Source:ZFIN;Acc:ZDB-GENE-030131-4242]
91. WDR77 2463 1.636 - 0.841 - - - - 0.795 - - WD repeat domain 77
92. gnai2b ENSDARG00000017294 686 1.634 - - - - - 0.858 0.776 - - guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5861]
93. ccnd2b ENSDARG00000070408 411 1.634 - - - - - 0.848 0.786 - - cyclin D2, b [Source:ZFIN;Acc:ZDB-GENE-050420-354]
94. st13 ENSDARG00000021973 7787 1.633 - - - - - - 0.829 0.804 - ST13, Hsp70 interacting protein [Source:ZFIN;Acc:ZDB-GENE-030131-5395]
95. tet3 ENSDARG00000062646 6672 1.632 - - - - - 0.910 0.722 - - tet methylcytosine dioxygenase 3 [Source:ZFIN;Acc:ZDB-GENE-060526-109]
96. dla ENSDARG00000010791 9281 1.627 - - - - 0.925 - - - 0.702 deltaA [Source:ZFIN;Acc:ZDB-GENE-980526-29]
97. lsm14aa ENSDARG00000006600 2298 1.624 - - - - - 0.851 0.773 - - LSM14A mRNA processing body assembly factor a [Source:ZFIN;Acc:ZDB-GENE-040426-1567]
98. si:ch211-11k18.4 ENSDARG00000087869 3298 1.622 - - - - - 0.780 0.842 - - si:ch211-11k18.4 [Source:ZFIN;Acc:ZDB-GENE-070912-22]
99. CABZ01008011.1 CABZ01008011.1 761 1.62 - - 0.777 - - 0.843 - - -
100. pef1 ENSDARG00000023989 3013 1.617 - - - - - 0.903 0.714 - - penta-EF-hand domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040801-259]

There are 2007 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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