Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for smg6

Gene Name Gene ID Reads Annotation
smg6 ENSDARG00000100481 493 SMG6 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-081107-52]










Genes with expression patterns similar to smg6

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. smg6 ENSDARG00000100481 493 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SMG6 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-081107-52]
2. ftsjd2 ftsjd2 2694 2.559 - - 0.957 - - 0.780 - - 0.822
3. HDX ENSDARG00000079382 513 1.954 - - 0.997 - - - - - 0.957 highly divergent homeobox [Source:ZFIN;Acc:ZDB-GENE-140106-165]
4. rnf121 ENSDARG00000060282 1809 1.943 - - 0.964 - - - - - 0.979 ring finger protein 121 [Source:ZFIN;Acc:ZDB-GENE-050809-3]
5. zgc:113348 ENSDARG00000103795 1351 1.939 - - 0.986 - - - - - 0.953 zgc:113348 [Source:ZFIN;Acc:ZDB-GENE-050227-10]
6. rad51 ENSDARG00000041411, ENSDARG00000111948 1056 1.933 - - 0.984 - - - - - 0.949 RAD51 recombinase [Source:ZFIN;Acc:ZDB-GENE-040426-2286]
7. ubl3b ENSDARG00000021556 1210 1.912 - - 0.991 - - - - - 0.921 ubiquitin-like 3b [Source:ZFIN;Acc:ZDB-GENE-040630-4]
8. phf10 ENSDARG00000070084 1210 1.888 - - 0.976 - - - - - 0.912 PHD finger protein 10 [Source:ZFIN;Acc:ZDB-GENE-040426-1573]
9. eya3 ENSDARG00000036100 1965 1.887 - - 0.973 - - - - - 0.914 EYA transcriptional coactivator and phosphatase 3 [Source:ZFIN;Acc:ZDB-GENE-060503-864]
10. CABZ01087568.1 CABZ01087568.1 1487 1.856 - - 0.988 - - - - - 0.868
11. DLC1 ENSDARG00000079317 2149 1.842 - - 0.982 - - - - - 0.860 DLC1 Rho GTPase activating protein [Source:ZFIN;Acc:ZDB-GENE-130206-12]
12. C10H11orf30 C10H11orf30 1982 1.825 - 0.846 0.979 - - - - - -
13. cpsf1 ENSDARG00000034178 2036 1.812 - - 0.962 - - - - - 0.850 cleavage and polyadenylation specific factor 1 [Source:ZFIN;Acc:ZDB-GENE-040709-2]
14. zgc:55558 ENSDARG00000013161, ENSDARG00000111354 1687 1.775 - 0.784 0.991 - - - - - - zgc:55558 [Source:ZFIN;Acc:ZDB-GENE-040426-740]
15. tbpl1 ENSDARG00000036868 711 1.76 0.770 - 0.990 - - - - - - TBP-like 1 [Source:ZFIN;Acc:ZDB-GENE-040520-2]
16. ube3d ENSDARG00000026178 244 1.76 0.781 - - - - - - - 0.979 ubiquitin protein ligase E3D [Source:ZFIN;Acc:ZDB-GENE-091218-3]
17. CTIF ENSDARG00000090617 270 1.751 0.774 - - - - - - - 0.977 CBP80/20-dependent translation initiation factor [Source:ZFIN;Acc:ZDB-GENE-130530-1003]
18. tmem2 2572 1.74 - - 0.964 - - - - - 0.776 transmembrane protein 2, transcript variant X1
19. cars ENSDARG00000036164 2019 1.73 - - 0.956 - - - - - 0.774 cysteinyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030328-29]
20. sema4ab ENSDARG00000062352 409 1.717 0.756 - - - - - - - 0.961 sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ab [Source:ZFIN;Acc:ZDB-GENE-060503-363]
21. MIB1 ENSDARG00000102184 3285 1.717 - 0.842 - - - - - - 0.875 mindbomb E3 ubiquitin protein ligase 1 [Source:ZFIN;Acc:ZDB-GENE-030404-2]
22. hnrnpd ENSDARG00000059246, ENSDARG00000109297, ENSDARG00000113453 3440 1.712 - - 0.942 - - - - - 0.770 heterogeneous nuclear ribonucleoprotein D [Source:ZFIN;Acc:ZDB-GENE-070424-97]
23. rimkla ENSDARG00000016830, ENSDARG00000112193 4111 1.703 - - 0.917 - - - - - 0.786 ribosomal modification protein rimK-like family member A [Source:ZFIN;Acc:ZDB-GENE-040912-20]
24. rexo1 ENSDARG00000026986 770 1.701 - - 0.995 - - - 0.706 - - REX1, RNA exonuclease 1 homolog [Source:ZFIN;Acc:ZDB-GENE-030131-1650]
25. zgc:158309 zgc:158309 2696 1.699 - 0.713 0.986 - - - - - -
26. tmem59l ENSDARG00000003655 1536 1.679 - 0.742 - - - - - - 0.937 transmembrane protein 59-like [Source:ZFIN;Acc:ZDB-GENE-040426-2651]
27. apopt1 ENSDARG00000092473 682 1.662 - 0.709 - - - - - - 0.953 apoptogenic 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-090313-66]
28. EEF1E1 ENSDARG00000071774 3806 1.662 - 0.704 0.958 - - - - - - eukaryotic translation elongation factor 1 epsilon 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4949]
29. papss1 ENSDARG00000057099 809 1.657 - 0.738 - - - - - - 0.919 3'-phosphoadenosine 5'-phosphosulfate synthase 1 [Source:ZFIN;Acc:ZDB-GENE-080721-5]
30. rwdd ENSDARG00000068256 964 1.649 - 0.754 - - - - - - 0.895 RWD domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-041010-61]
31. dlc ENSDARG00000002336, ENSDARG00000116332 578 1.642 0.759 - - - - - - - 0.883 deltaC [Source:ZFIN;Acc:ZDB-GENE-000125-4]
32. hdac4 ENSDARG00000098349 1370 1.636 - 0.755 - - - - - - 0.881 histone deacetylase 4 [Source:ZFIN;Acc:ZDB-GENE-061013-95]
33. supt16h ENSDARG00000079949 4755 1.629 - 0.713 - - - - - - 0.916 SPT16 homolog, facilitates chromatin remodeling subunit [Source:ZFIN;Acc:ZDB-GENE-031118-96]
34. ttc14 ENSDARG00000013845 1192 1.627 - 0.749 - - - - - - 0.878 tetratricopeptide repeat domain 14 [Source:ZFIN;Acc:ZDB-GENE-050327-26]
35. BX511013.1 ENSDARG00000112403 1018 1.605 - 0.741 - - - - - - 0.864 uncharacterized LOC103908633 [Source:NCBI gene;Acc:103908633]
36. NEDD9 ENSDARG00000089878, ENSDARG00000116312 165 1.603 0.837 - - - - 0.766 - - - neural precursor cell expressed, developmentally down-regulated 9 [Source:ZFIN;Acc:ZDB-GENE-061013-318]
37. stx12 ENSDARG00000098813 2576 1.582 - 0.762 - - - - - - 0.820 syntaxin 12 [Source:ZFIN;Acc:ZDB-GENE-040625-11]
38. tmem248 ENSDARG00000018825 1560 1.58 - 0.707 - - - - - - 0.873 transmembrane protein 248 [Source:ZFIN;Acc:ZDB-GENE-050320-103]
39. prdx1 ENSDARG00000058734 4582 1.575 - 0.718 0.857 - - - - - - peroxiredoxin 1 [Source:ZFIN;Acc:ZDB-GENE-050320-35]
40. kdm5c ENSDARG00000006124 4389 1.565 - 0.734 0.831 - - - - - - lysine (K)-specific demethylase 5C [Source:ZFIN;Acc:ZDB-GENE-060810-94]
41. suv420h1 1810 1.558 - 0.724 - - - - - - 0.834 suppressor of variegation 4-20 homolog 1 (Drosophila)
42. skap1 ENSDARG00000001498, ENSDARG00000114047 55 1.553 0.736 - - - 0.817 - - - - src kinase associated phosphoprotein 1 [Source:ZFIN;Acc:ZDB-GENE-090721-1]
43. lypla2 ENSDARG00000053656 8971 1.551 - 0.742 0.809 - - - - - - lysophospholipase II [Source:ZFIN;Acc:ZDB-GENE-040426-1715]
44. b4galt6 ENSDARG00000010301 2005 1.542 - 0.763 - - - - - - 0.779 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6 [Source:ZFIN;Acc:ZDB-GENE-040426-789]
45. ENSDARG00000086666 ENSDARG00000086666 2159 1.527 - 0.704 0.823 - - - - - -
46. PLEKHG1 2100 1.524 0.777 - 0.747 - - - - - - pleckstrin homology and RhoGEF domain containing G1, transcript variant X2
47. cenpf ENSDARG00000055133 5267 1.485 0.771 0.714 - - - - - - - centromere protein F [Source:ZFIN;Acc:ZDB-GENE-041111-205]
48. rgl1 ENSDARG00000005989, ENSDARG00000114367 2501 1.476 - 0.719 - - - - - - 0.757 ral guanine nucleotide dissociation stimulator-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1816]
49. stau1 ENSDARG00000044182, ENSDARG00000115476 6121 1.453 - 0.702 - - - - - - 0.751 staufen double-stranded RNA binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6372]
50. dusp8a ENSDARG00000009299 1302 1.411 0.701 0.710 - - - - - - - dual specificity phosphatase 8a [Source:ZFIN;Acc:ZDB-GENE-040426-1842]
51. si:ch211-283l16.1 ENSDARG00000112586 131 0.996 - - 0.996 - - - - - - si:ch211-283l16.1 [Source:ZFIN;Acc:ZDB-GENE-110913-44]
52. brap ENSDARG00000008560 821 0.995 - - 0.995 - - - - - - BRCA1 associated protein [Source:ZFIN;Acc:ZDB-GENE-040718-168]
53. zgc:195001 ENSDARG00000070484 3281 0.995 - - 0.995 - - - - - - zgc:195001 [Source:ZFIN;Acc:ZDB-GENE-081022-173]
54. foxd1 ENSDARG00000029179 726 0.995 - - 0.995 - - - - - - forkhead box D1 [Source:ZFIN;Acc:ZDB-GENE-040426-2094]
55. prr18 ENSDARG00000093768 409 0.995 - - 0.995 - - - - - - proline rich 18 [Source:ZFIN;Acc:ZDB-GENE-081107-6]
56. CABZ01068153.1 CABZ01068153.1 211 0.995 - - 0.995 - - - - - -
57. tmem194b tmem194b 724 0.995 - - 0.995 - - - - - -
58. edn2 ENSDARG00000070578 276 0.995 - - 0.995 - - - - - - endothelin 2 [Source:ZFIN;Acc:ZDB-GENE-060503-774]
59. thbs1b ENSDARG00000010785 3095 0.994 - - 0.994 - - - - - - thrombospondin 1b [Source:ZFIN;Acc:ZDB-GENE-020708-1]
60. dhx34 ENSDARG00000061168 349 0.994 - - 0.994 - - - - - - DEAH (Asp-Glu-Ala-His) box polypeptide 34 [Source:ZFIN;Acc:ZDB-GENE-061207-30]
61. PKN2 ENSDARG00000101293 358 0.994 - - 0.994 - - - - - - protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
62. nr1h3 ENSDARG00000098439 859 0.993 - - 0.993 - - - - - - nuclear receptor subfamily 1, group H, member 3 [Source:ZFIN;Acc:ZDB-GENE-050410-7]
63. s100a1 ENSDARG00000015543 274 0.993 - - 0.993 - - - - - - S100 calcium binding protein A1 [Source:ZFIN;Acc:ZDB-GENE-040916-1]
64. clk2a ENSDARG00000062954 1890 0.993 - - 0.993 - - - - - - CDC-like kinase 2a [Source:ZFIN;Acc:ZDB-GENE-030131-298]
65. SEMA4C ENSDARG00000079611 610 0.993 - - 0.993 - - - - - - sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C [Source:ZFIN;Acc:ZDB-GENE-080303-16]
66. atg4a ENSDARG00000014531 481 0.993 - - 0.993 - - - - - - autophagy related 4A, cysteine peptidase [Source:ZFIN;Acc:ZDB-GENE-050522-430]
67. bbs2 ENSDARG00000041621, ENSDARG00000110124 321 0.992 - - 0.992 - - - - - - Bardet-Biedl syndrome 2 [Source:ZFIN;Acc:ZDB-GENE-020801-1]
68. rad18 ENSDARG00000027938 574 0.992 - - 0.992 - - - - - - RAD18 E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-040426-745]
69. SON SON 510 0.992 - - 0.992 - - - - - -
70. yaf2 ENSDARG00000015966 1905 0.992 - - 0.992 - - - - - - YY1 associated factor 2 [Source:ZFIN;Acc:ZDB-GENE-041210-115]
71. flad1 ENSDARG00000070390 604 0.992 - - 0.992 - - - - - - flavin adenine dinucleotide synthetase 1 [Source:ZFIN;Acc:ZDB-GENE-040822-44]
72. dbf4 ENSDARG00000074796 489 0.992 - - 0.992 - - - - - - DBF4 zinc finger [Source:ZFIN;Acc:ZDB-GENE-091020-13]
73. cactin ENSDARG00000059866 553 0.992 - - 0.992 - - - - - - cactin [Source:ZFIN;Acc:ZDB-GENE-060503-322]
74. ARMCX3 ARMCX3 328 0.992 - - 0.992 - - - - - -
75. wu:fb52c12 wu:fb52c12 763 0.992 - - 0.992 - - - - - -
76. agpat3 ENSDARG00000036549 1093 0.992 - - 0.992 - - - - - - 1-acylglycerol-3-phosphate O-acyltransferase 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2765]
77. fdx1l 461 0.991 - - 0.991 - - - - - - ferredoxin 1-like
78. pard6b ENSDARG00000003865 990 0.991 - - 0.991 - - - - - - par-6 partitioning defective 6 homolog beta (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-090312-133]
79. si:dkey-71p21.9 si:dkey-71p21.9 603 0.991 - - 0.991 - - - - - -
80. fam203a fam203a 570 0.991 - - 0.991 - - - - - -
81. nlk1 ENSDARG00000006566 1123 0.991 - - 0.991 - - - - - - nemo-like kinase, type 1 [Source:ZFIN;Acc:ZDB-GENE-040701-1]
82. zmat5 ENSDARG00000035434 983 0.991 - - 0.991 - - - - - - zinc finger, matrin-type 5 [Source:ZFIN;Acc:ZDB-GENE-040808-31]
83. dscr3 1229 0.99 - - 0.990 - - - - - - Down syndrome critical region 3
84. egln2 ENSDARG00000062562 2500 0.99 - - 0.990 - - - - - - egl-9 family hypoxia-inducible factor 2 [Source:ZFIN;Acc:ZDB-GENE-060503-757]
85. APBA3 APBA3 852 0.989 - - 0.989 - - - - - -
86. TUSC3 ENSDARG00000078854 1021 0.989 - - 0.989 - - - - - - tumor suppressor candidate 3 [Source:ZFIN;Acc:ZDB-GENE-050522-381]
87. xpc ENSDARG00000039754 515 0.989 - - 0.989 - - - - - - xeroderma pigmentosum, complementation group C [Source:ZFIN;Acc:ZDB-GENE-030131-8461]
88. rbm39b ENSDARG00000041853 1421 0.989 - - 0.989 - - - - - - RNA binding motif protein 39b [Source:ZFIN;Acc:ZDB-GENE-050327-97]
89. tnfaip3 ENSDARG00000027777 1066 0.989 - - 0.989 - - - - - - tumor necrosis factor, alpha-induced protein 3 [Source:ZFIN;Acc:ZDB-GENE-100212-2]
90. srebf2 ENSDARG00000063438 1982 0.989 - - 0.989 - - - - - - sterol regulatory element binding transcription factor 2 [Source:ZFIN;Acc:ZDB-GENE-070410-8]
91. hrasb ENSDARG00000005651 662 0.988 - - 0.988 - - - - - - -Ha-ras Harvey rat sarcoma viral oncogene homolog b [Source:ZFIN;Acc:ZDB-GENE-050522-466]
92. klf5a 1072 0.988 - - 0.988 - - - - - - Kruppel-like factor 5a
93. wtip ENSDARG00000103607 797 0.988 - - 0.988 - - - - - - WT1 interacting protein [Source:ZFIN;Acc:ZDB-GENE-050419-261]
94. BX571768.1 ENSDARG00000116980 711 0.988 - - 0.988 - - - - - -
95. hsbp1a ENSDARG00000069425 1086 0.988 - - 0.988 - - - - - - heat shock factor binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-050320-136]
96. ints9 ENSDARG00000067913 600 0.988 - - 0.988 - - - - - - integrator complex subunit 9 [Source:ZFIN;Acc:ZDB-GENE-061013-129]
97. irf2a ENSDARG00000007387 915 0.987 - - 0.987 - - - - - - interferon regulatory factor 2a [Source:ZFIN;Acc:ZDB-GENE-030131-4135]
98. st5 ENSDARG00000037363, ENSDARG00000112276 1797 0.987 - - 0.987 - - - - - - suppression of tumorigenicity 5 [Source:ZFIN;Acc:ZDB-GENE-030131-2547]
99. rspo2 ENSDARG00000079570, ENSDARG00000113124 1688 0.987 - - 0.987 - - - - - - R-spondin 2 [Source:ZFIN;Acc:ZDB-GENE-060503-667]
100. notch1a ENSDARG00000103554 498 0.987 - - 0.987 - - - - - - notch 1a [Source:ZFIN;Acc:ZDB-GENE-990415-173]

There are 1212 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA