Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for smg5

Gene Name Gene ID Reads Annotation
smg5 ENSDARG00000041481 1286 SMG5 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-050913-144]










Genes with expression patterns similar to smg5

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. smg5 ENSDARG00000041481 1286 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SMG5 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-050913-144]
2. lsm8 ENSDARG00000091656, ENSDARG00000111914 2751 2.5 - - 0.955 - 0.820 - - - 0.725 LSM8 homolog, U6 small nuclear RNA associated [Source:ZFIN;Acc:ZDB-GENE-070629-3]
3. max ENSDARG00000024844 6035 2.457 - - 0.891 - 0.839 - - - 0.727 myc associated factor X [Source:ZFIN;Acc:ZDB-GENE-990415-152]
4. pak2b ENSDARG00000018476 4331 2.431 - 0.799 - - 0.911 - 0.721 - - p21 protein (Cdc42/Rac)-activated kinase 2b [Source:ZFIN;Acc:ZDB-GENE-030131-3759]
5. LIG1 ENSDARG00000060041, ENSDARG00000110159, ENSDARG00000113788 8110 2.381 - - - - 0.888 0.712 0.781 - - ligase I, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-110404-2]
6. znf292a ENSDARG00000016763 2253 2.376 - - 0.958 - - - 0.711 - 0.707 zinc finger protein 292a [Source:ZFIN;Acc:ZDB-GENE-071004-18]
7. psmb7 ENSDARG00000037962 11542 2.375 - - 0.856 - - - 0.806 - 0.713 proteasome subunit beta 7 [Source:ZFIN;Acc:ZDB-GENE-001208-4]
8. yme1l1a ENSDARG00000075192 2634 2.366 - 0.748 - - 0.894 - 0.724 - - YME1-like 1a [Source:ZFIN;Acc:ZDB-GENE-091113-41]
9. C1H4orf27 C1H4orf27 1961 2.347 - - - - 0.866 - 0.766 - 0.715
10. nup93 ENSDARG00000003487, ENSDARG00000111433 2474 2.164 - - - - 0.728 - 0.725 - 0.711 nucleoporin 93 [Source:ZFIN;Acc:ZDB-GENE-990415-46]
11. lrp12 ENSDARG00000098845 999 1.918 - - 0.992 - 0.926 - - - - low density lipoprotein receptor-related protein 12 [Source:ZFIN;Acc:ZDB-GENE-060503-399]
12. eva1ba ENSDARG00000102701 1480 1.892 - - 0.980 - 0.912 - - - - eva-1 homolog Ba (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-030131-8941]
13. eif3ja ENSDARG00000012603 6324 1.875 - - 0.949 - 0.926 - - - - eukaryotic translation initiation factor 3, subunit Ja [Source:ZFIN;Acc:ZDB-GENE-040426-1266]
14. tbx2a ENSDARG00000018025, ENSDARG00000109541 1183 1.872 - - 0.984 - 0.888 - - - - T-box 2a [Source:ZFIN;Acc:ZDB-GENE-990917-4]
15. wu:fc26g07 wu:fc26g07 1165 1.861 - - 0.990 - - - - 0.871 -
16. hmg20b ENSDARG00000042045, ENSDARG00000116536 2638 1.853 - - 0.991 - 0.862 - - - - high mobility group 20B [Source:ZFIN;Acc:ZDB-GENE-030131-4258]
17. tm2d3 ENSDARG00000076618 2310 1.83 - - 0.969 - 0.861 - - - - TM2 domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-070620-20]
18. dek ENSDARG00000070108 2262 1.811 - - 0.918 - 0.893 - - - - DEK proto-oncogene [Source:ZFIN;Acc:ZDB-GENE-060512-191]
19. gdi1 ENSDARG00000056122 4106 1.801 - - 0.973 - 0.828 - - - - GDP dissociation inhibitor 1 [Source:ZFIN;Acc:ZDB-GENE-050522-504]
20. rnf2 ENSDARG00000010381 3427 1.8 - - 0.963 - - - 0.837 - - ring finger protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5243]
21. LPHN2 LPHN2 1971 1.766 - - 0.973 - 0.793 - - - -
22. lpl ENSDARG00000087697 2578 1.764 - - 0.955 - 0.809 - - - - lipoprotein lipase [Source:ZFIN;Acc:ZDB-GENE-990415-139]
23. strn3 ENSDARG00000001729 4608 1.759 - - 0.954 - 0.805 - - - - striatin, calmodulin binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-030616-405]
24. mn1b ENSDARG00000079248 882 1.759 - - - - 0.913 - 0.846 - - meningioma 1b [Source:ZFIN;Acc:ZDB-GENE-080917-23]
25. atad5a ENSDARG00000070568 1840 1.751 - - 0.970 - - - - - 0.781 ATPase family, AAA domain containing 5a [Source:ZFIN;Acc:ZDB-GENE-070912-20]
26. CABZ01072954.1 CABZ01072954.1 2330 1.748 - - 0.966 - - - 0.782 - -
27. lsm6 ENSDARG00000036995 4377 1.747 - - 0.877 - - - 0.870 - - LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:ZFIN;Acc:ZDB-GENE-040625-50]
28. wu:fb17g07 wu:fb17g07 10567 1.743 - - 0.947 - - - 0.796 - -
29. si:ch211-288g17.3 ENSDARG00000070959 2425 1.738 - 0.803 - - 0.935 - - - - si:ch211-288g17.3 [Source:ZFIN;Acc:ZDB-GENE-030131-461]
30. xrcc5_1 ENSDARG00000099298 1533 1.734 - - 0.981 - - - 0.753 - - X-ray repair complementing defective repair in Chinese hamster cells 5 [Source:ZFIN;Acc:ZDB-GENE-041008-108]
31. mcts1 ENSDARG00000025972 4662 1.73 - - 0.936 - - - 0.794 - - malignant T cell amplified sequence 1 [Source:ZFIN;Acc:ZDB-GENE-040426-957]
32. ldb1a ENSDARG00000010137 3035 1.719 - - 0.964 - - - - - 0.755 LIM domain binding 1a [Source:ZFIN;Acc:ZDB-GENE-990415-138]
33. anapc13 ENSDARG00000078435 996 1.718 - - 0.964 - - - 0.754 - - anaphase promoting complex subunit 13 [Source:ZFIN;Acc:ZDB-GENE-091204-298]
34. rpf2 ENSDARG00000043960 2719 1.715 - - 0.968 - - - 0.747 - - ribosome production factor 2 homolog [Source:ZFIN;Acc:ZDB-GENE-040426-2501]
35. mettl3 ENSDARG00000012827 728 1.714 - - 0.985 - - - 0.729 - - methyltransferase like 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9498]
36. tmem248 ENSDARG00000018825 1560 1.713 - 0.724 0.989 - - - - - - transmembrane protein 248 [Source:ZFIN;Acc:ZDB-GENE-050320-103]
37. txndc9 ENSDARG00000069853, ENSDARG00000110688 1519 1.704 - - - - 0.931 - 0.773 - - thioredoxin domain containing 9 [Source:ZFIN;Acc:ZDB-GENE-030131-8569]
38. arid1b ENSDARG00000092503 1376 1.7 - - 0.986 - - - 0.714 - - AT rich interactive domain 1B (SWI1-like) [Source:ZFIN;Acc:ZDB-GENE-030131-4459]
39. setdb1a ENSDARG00000041243 1952 1.696 - - 0.990 - - - 0.706 - - SET domain, bifurcated 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2421]
40. mycla ENSDARG00000006003 1866 1.69 - - - - 0.926 - 0.764 - - MYCL proto-oncogene, bHLH transcription factor a [Source:ZFIN;Acc:ZDB-GENE-040426-2439]
41. dip2ba ENSDARG00000005350, ENSDARG00000111011, ENSDARG00000111214 1640 1.687 - 0.801 - - 0.886 - - - - disco-interacting protein 2 homolog Ba [Source:ZFIN;Acc:ZDB-GENE-040426-2305]
42. pdzrn3b ENSDARG00000073869 1566 1.687 - - 0.985 - - - 0.702 - - PDZ domain containing RING finger 3b [Source:ZFIN;Acc:ZDB-GENE-071022-4]
43. cmip ENSDARG00000062933 4521 1.672 - 0.716 0.956 - - - - - - c-Maf inducing protein [Source:ZFIN;Acc:ZDB-GENE-050419-50]
44. gstm gstm 4064 1.671 - - 0.878 - - - 0.793 - -
45. ebp ENSDARG00000046098 502 1.67 - 0.751 - - 0.919 - - - - EBP, cholestenol delta-isomerase [Source:ZFIN;Acc:ZDB-GENE-040718-12]
46. pabpn1 ENSDARG00000045373 4876 1.67 - - 0.889 - - - 0.781 - - poly(A) binding protein, nuclear 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2401]
47. slc19a2 ENSDARG00000059712 533 1.668 - 0.788 - - - - - 0.880 - solute carrier family 19 (thiamine transporter), member 2 [Source:ZFIN;Acc:ZDB-GENE-110411-262]
48. arid2 ENSDARG00000007413 4413 1.668 - - 0.944 - 0.724 - - - - AT rich interactive domain 2 (ARID, RFX-like) [Source:ZFIN;Acc:ZDB-GENE-030131-6311]
49. rbm39b ENSDARG00000041853 1421 1.649 - - - - 0.867 0.782 - - - RNA binding motif protein 39b [Source:ZFIN;Acc:ZDB-GENE-050327-97]
50. CABZ01080568.2 CABZ01080568.2 2137 1.647 - 0.766 - - 0.881 - - - -
51. appb ENSDARG00000055543, ENSDARG00000109552 4461 1.647 - 0.720 0.927 - - - - - - amyloid beta (A4) precursor protein b [Source:ZFIN;Acc:ZDB-GENE-020220-1]
52. hoxd10a ENSDARG00000057859 1498 1.646 - - - - 0.818 - 0.828 - - homeobox D10a [Source:ZFIN;Acc:ZDB-GENE-990415-116]
53. unga ENSDARG00000042527 1169 1.644 - - - - 0.844 - 0.800 - - uracil DNA glycosylase a [Source:ZFIN;Acc:ZDB-GENE-040426-900]
54. rab11a ENSDARG00000041450, ENSDARG00000109465 7418 1.643 - - 0.894 - - - - - 0.749 RAB11a, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-041114-53]
55. cd99l2 ENSDARG00000056722 5036 1.642 - - 0.855 - - - 0.787 - - CD99 molecule-like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1986]
56. nelfb ENSDARG00000035505 1337 1.638 - 0.738 - - 0.900 - - - - negative elongation factor complex member B [Source:ZFIN;Acc:ZDB-GENE-040426-765]
57. mapk3 ENSDARG00000070573 6842 1.636 - 0.756 - - 0.880 - - - - mitogen-activated protein kinase 3 [Source:ZFIN;Acc:ZDB-GENE-040121-1]
58. slc20a2 ENSDARG00000060796, ENSDARG00000113613 5420 1.635 - - 0.927 - - - 0.708 - - solute carrier family 20 (phosphate transporter), member 2 [Source:ZFIN;Acc:ZDB-GENE-060929-828]
59. rnaseh2a ENSDARG00000018891 1979 1.635 - - - - 0.927 - - - 0.708 ribonuclease H2, subunit A [Source:ZFIN;Acc:ZDB-GENE-040426-976]
60. PRC1 PRC1 583 1.634 - - - - 0.921 - 0.713 - -
61. rab1ba ENSDARG00000058044 5080 1.624 - - 0.904 - 0.720 - - - - zRAB1B, member RAS oncogene family a [Source:ZFIN;Acc:ZDB-GENE-040426-873]
62. prcc ENSDARG00000063252 2065 1.621 - - - - - 0.748 0.873 - - proline rich mitotic checkpoint control factor [Source:ZFIN;Acc:ZDB-GENE-070717-1]
63. camlg ENSDARG00000100409 2157 1.616 - 0.733 - - 0.883 - - - - calcium modulating ligand [Source:ZFIN;Acc:ZDB-GENE-040426-2407]
64. tufm ENSDARG00000104173 9292 1.616 - - 0.844 - - - 0.772 - - Tu translation elongation factor, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-050320-73]
65. apaf1 ENSDARG00000021239 1185 1.615 - 0.732 - - 0.883 - - - - apoptotic peptidase activating factor 1 [Source:ZFIN;Acc:ZDB-GENE-000616-4]
66. prr11 ENSDARG00000087393 677 1.613 - - - - 0.903 - 0.710 - - proline rich 11 [Source:ZFIN;Acc:ZDB-GENE-091118-97]
67. mark2b ENSDARG00000032458 821 1.612 - - - - 0.911 - 0.701 - - MAP/microtubule affinity-regulating kinase 2b [Source:ZFIN;Acc:ZDB-GENE-080215-4]
68. grem2 grem2 743 1.609 - - - - 0.900 - 0.709 - -
69. abcf2a ENSDARG00000038785 2065 1.609 - - - - 0.888 - 0.721 - - ATP-binding cassette, sub-family F (GCN20), member 2a [Source:ZFIN;Acc:ZDB-GENE-030131-8714]
70. mycbp2 ENSDARG00000001220, ENSDARG00000113355 3417 1.598 - 0.765 - - 0.833 - - - - MYC binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-030616-132]
71. dctd ENSDARG00000036990 2168 1.595 - - - - 0.839 - 0.756 - - dCMP deaminase [Source:ZFIN;Acc:ZDB-GENE-050417-116]
72. med24 ENSDARG00000099431 893 1.588 0.764 - - - - - 0.824 - - mediator complex subunit 24 [Source:ZFIN;Acc:ZDB-GENE-030131-2341]
73. wasf3 wasf3 3287 1.587 - - 0.714 - 0.873 - - - -
74. prkacaa ENSDARG00000100349 2711 1.58 - 0.754 - - 0.826 - - - - protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a [Source:ZFIN;Acc:ZDB-GENE-050114-6]
75. vps4a ENSDARG00000030114 933 1.57 - 0.709 - - - - 0.861 - - vacuolar protein sorting 4a homolog A (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060929-388]
76. snx27a ENSDARG00000033804 2249 1.568 - - - - 0.830 - 0.738 - - sorting nexin family member 27a [Source:ZFIN;Acc:ZDB-GENE-060503-371]
77. tpx2 ENSDARG00000078654 8120 1.565 - - 0.817 - - - 0.748 - - TPX2, microtubule-associated, homolog (Xenopus laevis) [Source:ZFIN;Acc:ZDB-GENE-030131-9652]
78. wu:fb30e12 wu:fb30e12 1254 1.563 - 0.783 - - - - 0.780 - -
79. casp3a ENSDARG00000017905, ENSDARG00000113754 2819 1.559 - 0.784 - - 0.775 - - - - caspase 3, apoptosis-related cysteine peptidase a [Source:ZFIN;Acc:ZDB-GENE-011210-1]
80. fen1 ENSDARG00000011404 3358 1.552 - - - - - - 0.794 - 0.758 flap structure-specific endonuclease 1 [Source:ZFIN;Acc:ZDB-GENE-031112-11]
81. ilk ENSDARG00000056964 6686 1.552 - 0.798 - - - - 0.754 - - integrin-linked kinase [Source:ZFIN;Acc:ZDB-GENE-040426-1435]
82. eif3g ENSDARG00000016889 10367 1.549 - - 0.788 - - - 0.761 - - eukaryotic translation initiation factor 3, subunit G [Source:ZFIN;Acc:ZDB-GENE-040426-1076]
83. smc2 ENSDARG00000017744, ENSDARG00000114076 2271 1.544 - - - - 0.807 - - - 0.737 structural maintenance of chromosomes 2 [Source:ZFIN;Acc:ZDB-GENE-030131-105]
84. DTX4 ENSDARG00000076302 2642 1.54 - - 0.724 - 0.816 - - - - deltex E3 ubiquitin ligase 4 [Source:HGNC Symbol;Acc:HGNC:29151]
85. zgc:65772 zgc:65772 2092 1.539 - - - - 0.805 - 0.734 - -
86. pomp ENSDARG00000032296 4439 1.539 - - - - 0.717 - 0.822 - - proteasome maturation protein [Source:ZFIN;Acc:ZDB-GENE-040801-10]
87. gas1b ENSDARG00000067984 1748 1.533 - - - - - - 0.747 0.786 - growth arrest-specific 1b [Source:ZFIN;Acc:ZDB-GENE-050302-79]
88. kdm2aa ENSDARG00000059653 2389 1.532 - 0.754 - - 0.778 - - - - lysine (K)-specific demethylase 2Aa [Source:ZFIN;Acc:ZDB-GENE-061215-144]
89. smarcb1a ENSDARG00000033647, ENSDARG00000111561 3528 1.529 - - 0.784 - 0.745 - - - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1a [Source:ZFIN;Acc:ZDB-GENE-041114-5]
90. hsp90aa1.2 ENSDARG00000024746 5210 1.529 - - - - 0.785 - 0.744 - - heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-031001-3]
91. thoc2 ENSDARG00000037503 8711 1.527 - - - - - - 0.754 0.773 - THO complex 2 [Source:ZFIN;Acc:ZDB-GENE-030616-54]
92. anxa13 ENSDARG00000013976 2476 1.525 - - - - 0.790 - 0.735 - - annexin A13 [Source:ZFIN;Acc:ZDB-GENE-010406-1]
93. cul4b ENSDARG00000060510 6053 1.525 - - 0.714 - 0.811 - - - - cullin 4B [Source:ZFIN;Acc:ZDB-GENE-041008-208]
94. C10H11orf30 C10H11orf30 1982 1.521 - 0.795 - - - - 0.726 - -
95. snrpd3l ENSDARG00000076283 7655 1.519 - - - - - - 0.780 - 0.739 small nuclear ribonucleoprotein D3 polypeptide, like [Source:ZFIN;Acc:ZDB-GENE-030131-5219]
96. sox6 ENSDARG00000015536 7728 1.519 - - 0.790 - - - 0.729 - - SRY (sex determining region Y)-box 6 [Source:ZFIN;Acc:ZDB-GENE-081120-6]
97. lamb2l ENSDARG00000033950 952 1.517 - 0.815 - - - - 0.702 - - laminin, beta 2-like [Source:ZFIN;Acc:ZDB-GENE-030131-4205]
98. zswim5 ENSDARG00000055900 4243 1.515 - - - - 0.805 - 0.710 - - zinc finger, SWIM-type containing 5 [Source:ZFIN;Acc:ZDB-GENE-030925-30]
99. pbk ENSDARG00000007221 1211 1.512 - - - - - 0.797 - - 0.715 PDZ binding kinase [Source:ZFIN;Acc:ZDB-GENE-030523-2]
100. KDM4C ENSDARG00000061504, ENSDARG00000111347, ENSDARG00000114179 383 1.51 - 0.761 - - - - 0.749 - - lysine (K)-specific demethylase 4C [Source:ZFIN;Acc:ZDB-GENE-070209-38]

There are 1473 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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