Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for smc3

Gene Name Gene ID Reads Annotation
smc3 ENSDARG00000019000, ENSDARG00000112055 6553 structural maintenance of chromosomes 3 [Source:ZFIN;Acc:ZDB-GENE-030131-3196]










Genes with expression patterns similar to smc3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. smc3 ENSDARG00000019000, ENSDARG00000112055 6553 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 structural maintenance of chromosomes 3 [Source:ZFIN;Acc:ZDB-GENE-030131-3196]
2. slbp ENSDARG00000100558 3405 3.131 - - 0.791 0.804 - 0.807 - 0.729 - stem-loop binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-9686]
3. dhx15 ENSDARG00000015392 7496 2.764 0.993 - - - 0.804 - 0.967 - - DEAH (Asp-Glu-Ala-His) box helicase 15 [Source:ZFIN;Acc:ZDB-GENE-030131-650]
4. prpf8 ENSDARG00000026180 7026 2.725 - - 0.823 - - - 0.952 - 0.950 pre-mRNA processing factor 8 [Source:ZFIN;Acc:ZDB-GENE-030131-577]
5. tex2 ENSDARG00000078186 2467 2.71 - 0.974 - - - - 0.919 0.817 - testis expressed 2 [Source:ZFIN;Acc:ZDB-GENE-070615-7]
6. C18H15orf39 C18H15orf39 1125 2.675 0.990 0.968 - - - 0.717 - - -
7. nup98 ENSDARG00000074955 3998 2.617 - - - - 0.837 - 0.960 0.820 - nucleoporin 98 [Source:ZFIN;Acc:ZDB-GENE-040426-1180]
8. kmt2bb ENSDARG00000060697 5230 2.609 - - - - 0.794 - 0.973 0.842 - lysine (K)-specific methyltransferase 2Bb [Source:ZFIN;Acc:ZDB-GENE-080521-1]
9. rcn1 ENSDARG00000070006 8455 2.602 - 0.919 - - 0.748 - 0.935 - - reticulocalbin 1, EF-hand calcium binding domain [Source:ZFIN;Acc:ZDB-GENE-080225-33]
10. histh1l ENSDARG00000035519 12293 2.593 0.982 0.721 - - - - 0.890 - - histone H1 like [Source:ZFIN;Acc:ZDB-GENE-050417-145]
11. sart3 ENSDARG00000008032 2594 2.579 - 0.961 0.758 - - - - 0.860 - squamous cell carcinoma antigen recognized by T cells 3 [Source:ZFIN;Acc:ZDB-GENE-040724-10]
12. fubp1 ENSDARG00000029248 15259 2.56 - 0.891 - 0.759 0.910 - - - - far upstream element (FUSE) binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2159]
13. lmnb2 ENSDARG00000101624 11304 2.497 - - - - 0.900 0.844 - 0.753 - lamin B2 [Source:ZFIN;Acc:ZDB-GENE-990630-13]
14. zc4h2 ENSDARG00000015314, ENSDARG00000112180 5141 2.484 - - 0.766 - - - 0.970 - 0.748 zinc finger, C4H2 domain containing [Source:ZFIN;Acc:ZDB-GENE-030131-2207]
15. arpc4 ENSDARG00000054063 6150 2.468 0.964 - - - 0.711 - 0.793 - - actin related protein 2/3 complex, subunit 4 [Source:ZFIN;Acc:ZDB-GENE-010724-9]
16. nop16 ENSDARG00000044402 3645 2.466 - 0.966 - - 0.702 - - 0.798 - NOP16 nucleolar protein homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040718-267]
17. fbxo11a_1 ENSDARG00000061631, ENSDARG00000102294, ENSDARG00000112746 10566 2.446 - 0.951 0.786 - - - - 0.709 - F-box protein 11a [Source:ZFIN;Acc:ZDB-GENE-061103-70]
18. ezh2 ENSDARG00000010571 3273 2.443 - - 0.845 0.744 0.854 - - - - enhancer of zeste 2 polycomb repressive complex 2 subunit [Source:ZFIN;Acc:ZDB-GENE-041111-259]
19. tcea1 ENSDARG00000003531 2912 2.404 - - 0.748 - 0.866 - - 0.790 - transcription elongation factor A (SII), 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8049]
20. prmt1 ENSDARG00000010246 11311 2.4 - - 0.758 - - - - 0.935 0.707 protein arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-693]
21. serpinh1a ENSDARG00000075954 6488 2.39 0.979 0.710 - - - - - - 0.701 serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a [Source:ZFIN;Acc:ZDB-GENE-080219-21]
22. kdm1a ENSDARG00000060679 6152 2.389 - - 0.766 0.736 - - - 0.887 - lysine (K)-specific demethylase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-7828]
23. pkp3 pkp3 9767 2.384 0.793 0.816 - - - - 0.775 - -
24. C1H4orf27 C1H4orf27 1961 2.371 - - 0.740 - - 0.746 - 0.885 -
25. tmpoa ENSDARG00000007315 3638 2.333 - - - - - 0.718 - 0.846 0.769 thymopoietin a [Source:ZFIN;Acc:ZDB-GENE-030131-6003]
26. wdr33 ENSDARG00000018272 4076 2.328 - - 0.728 - 0.863 - - 0.737 - WD repeat domain 33 [Source:ZFIN;Acc:ZDB-GENE-040924-3]
27. rpa1 ENSDARG00000003938 4403 2.296 - - 0.727 - - - 0.803 - 0.766 replication protein A1 [Source:ZFIN;Acc:ZDB-GENE-030912-3]
28. wdr5 ENSDARG00000016903 4834 2.283 - - 0.721 0.763 - - 0.799 - - WD repeat domain 5 [Source:ZFIN;Acc:ZDB-GENE-040426-2082]
29. ddx5 ENSDARG00000038068 35302 2.281 - - 0.701 0.716 - - 0.864 - - DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-925]
30. si:ch211-51e12.7 ENSDARG00000045914 9598 2.269 - 0.709 - - - 0.746 - - 0.814 si:ch211-51e12.7 [Source:ZFIN;Acc:ZDB-GENE-030131-8279]
31. ppp2r2d ENSDARG00000102009 5710 2.136 - - - 0.706 - 0.725 - - 0.705 protein phosphatase 2, regulatory subunit B, delta [Source:ZFIN;Acc:ZDB-GENE-040426-2086]
32. pon2 ENSDARG00000016856 1382 1.959 0.991 0.968 - - - - - - - paraoxonase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-7116]
33. mpi ENSDARG00000030786 3052 1.953 0.992 - - - - - 0.961 - - mannose phosphate isomerase [Source:ZFIN;Acc:ZDB-GENE-050904-6]
34. ppapdc1b ppapdc1b 2866 1.945 0.990 - - - - - 0.955 - -
35. dab2 ENSDARG00000031761 2000 1.944 0.988 - - - - - 0.956 - - Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040303-1]
36. cx35.4 ENSDARG00000042866 685 1.941 0.989 - - - - - 0.952 - - connexin 35.4 [Source:ZFIN;Acc:ZDB-GENE-050417-174]
37. acsbg2 ENSDARG00000004094 2445 1.937 0.992 - - - - - 0.945 - - acyl-CoA synthetase bubblegum family member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-7099]
38. hoxa10b ENSDARG00000031337 3992 1.936 - 0.962 - - - - 0.974 - - homeobox A10b [Source:ZFIN;Acc:ZDB-GENE-990415-97]
39. rab11a ENSDARG00000041450, ENSDARG00000109465 7418 1.933 - 0.970 - - - - 0.963 - - RAB11a, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-041114-53]
40. cxcl12a ENSDARG00000037116 5433 1.928 0.970 0.958 - - - - - - - chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1) [Source:ZFIN;Acc:ZDB-GENE-030318-1]
41. ddx3 ddx3 4076 1.921 - 0.978 - - - - 0.943 - -
42. dnttip2 ENSDARG00000057648 2381 1.917 0.994 - - - - - - 0.923 - deoxynucleotidyltransferase, terminal, interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080513-5]
43. klf6a ENSDARG00000029072 3758 1.912 - 0.959 - - - - 0.953 - - Kruppel-like factor 6a [Source:ZFIN;Acc:ZDB-GENE-021115-9]
44. knop1 ENSDARG00000077721 2198 1.879 0.992 - - - - - - 0.887 - lysine-rich nucleolar protein 1 [Source:ZFIN;Acc:ZDB-GENE-090313-76]
45. bves ENSDARG00000058548 2291 1.879 - 0.953 - - - - 0.926 - - blood vessel epicardial substance [Source:ZFIN;Acc:ZDB-GENE-040624-11]
46. pdcd10b ENSDARG00000012591 3395 1.876 - 0.918 - - - - 0.958 - - programmed cell death 10b [Source:ZFIN;Acc:ZDB-GENE-040426-2607]
47. MAP4K4 ENSDARG00000098670 4665 1.869 - 0.957 - - - - 0.912 - - mitogen-activated protein kinase kinase kinase kinase 4 [Source:ZFIN;Acc:ZDB-GENE-030131-6722]
48. rpl7l1 ENSDARG00000042864 3256 1.853 - 0.942 - - - - - 0.911 - ribosomal protein L7-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-970]
49. cdca7a ENSDARG00000077620 9345 1.847 - 0.881 - - - - 0.966 - - cell division cycle associated 7a [Source:ZFIN;Acc:ZDB-GENE-050417-29]
50. PELP1 ENSDARG00000079313 5771 1.833 - 0.944 - - - - - 0.889 - proline, glutamate and leucine rich protein 1 [Source:ZFIN;Acc:ZDB-GENE-140106-164]
51. zgc:100919 zgc:100919 7746 1.832 0.988 - - - - - 0.844 - -
52. st13 ENSDARG00000021973 7787 1.831 0.979 - - - - - - - 0.852 ST13, Hsp70 interacting protein [Source:ZFIN;Acc:ZDB-GENE-030131-5395]
53. arih1 ENSDARG00000003616, ENSDARG00000109413 1739 1.827 - 0.961 - - - - - 0.866 - ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-5213]
54. hmgcrb ENSDARG00000105206 2080 1.82 0.991 - - - - - - 0.829 - 3-hydroxy-3-methylglutaryl-CoA reductase b [Source:ZFIN;Acc:ZDB-GENE-051108-1]
55. si:ch211-13c6.2 ENSDARG00000027738 1521 1.806 - - - - - - 0.962 0.844 - si:ch211-13c6.2 [Source:ZFIN;Acc:ZDB-GENE-060503-666]
56. uck2a ENSDARG00000006074 1554 1.804 - 0.960 - - - - - 0.844 - uridine-cytidine kinase 2a [Source:ZFIN;Acc:ZDB-GENE-030131-7158]
57. ppp1cc 2361 1.79 0.991 - - - 0.799 - - - - protein phosphatase 1, catalytic subunit, gamma isozyme
58. pdap1a ENSDARG00000092546, ENSDARG00000116115 7617 1.773 - 0.937 - - - - - 0.836 - pdgfa associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1693]
59. amot ENSDARG00000078335 1757 1.772 - 0.963 - - 0.809 - - - - angiomotin [Source:ZFIN;Acc:ZDB-GENE-030131-7487]
60. ppm1la ENSDARG00000063218 2142 1.771 0.990 - - - - - - 0.781 - protein phosphatase, Mg2+/Mn2+ dependent, 1La [Source:ZFIN;Acc:ZDB-GENE-061103-118]
61. mier1a ENSDARG00000041072 1690 1.766 - - - - 0.846 - - 0.920 - mesoderm induction early response 1a, transcriptional regulator [Source:ZFIN;Acc:ZDB-GENE-030131-409]
62. strap ENSDARG00000007405 6426 1.764 - - - - - 0.801 0.963 - - serine/threonine kinase receptor associated protein [Source:ZFIN;Acc:ZDB-GENE-040426-1110]
63. auh ENSDARG00000042975 1841 1.763 - - - - - - 0.963 0.800 - AU RNA binding protein/enoyl-CoA hydratase [Source:ZFIN;Acc:ZDB-GENE-040801-95]
64. mbd3a ENSDARG00000061774 4047 1.759 - - - - - 0.788 0.971 - - methyl-CpG binding domain protein 3a [Source:ZFIN;Acc:ZDB-GENE-030131-9077]
65. arrb2b ENSDARG00000011545 3126 1.759 - - - - 0.804 - 0.955 - - arrestin, beta 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1332]
66. kat2a ENSDARG00000104734 802 1.756 0.991 - - - 0.765 - - - - K(lysine) acetyltransferase 2A [Source:ZFIN;Acc:ZDB-GENE-080403-11]
67. CNOT2 ENSDARG00000061802 1500 1.755 - 0.953 - - 0.802 - - - - CCR4-NOT transcription complex, subunit 2 [Source:ZFIN;Acc:ZDB-GENE-070410-70]
68. epdl2 ENSDARG00000055539 1895 1.752 0.973 - - - - - 0.779 - - ependymin-like 2 [Source:ZFIN;Acc:ZDB-GENE-091204-250]
69. rrm2_1 ENSDARG00000020711, ENSDARG00000078069 11634 1.749 - 0.959 0.790 - - - - - - ribonucleotide reductase M2 polypeptide [Source:ZFIN;Acc:ZDB-GENE-990415-25]
70. h2afva ENSDARG00000068820 16427 1.747 0.965 - - 0.782 - - - - - H2A histone family, member Va [Source:ZFIN;Acc:ZDB-GENE-020717-1]
71. sfpq ENSDARG00000011564, ENSDARG00000115611 15626 1.743 - 0.941 - 0.802 - - - - - splicing factor proline/glutamine-rich [Source:ZFIN;Acc:ZDB-GENE-040426-2452]
72. znf143b ENSDARG00000041581, ENSDARG00000111018, ENSDARG00000112408 1140 1.742 0.991 - - - - - - 0.751 - zinc finger protein 143b [Source:ZFIN;Acc:ZDB-GENE-040426-1586]
73. exoc1 ENSDARG00000043019 819 1.741 - 0.963 - - - 0.778 - - - exocyst complex component 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1057]
74. SRGAP3 ENSDARG00000060309 5353 1.741 - 0.946 - - - - 0.795 - - SLIT-ROBO Rho GTPase activating protein 3 [Source:ZFIN;Acc:ZDB-GENE-060524-4]
75. rbb4 rbb4 15541 1.739 - - 0.860 - - - - 0.879 -
76. scube2 ENSDARG00000037362 2833 1.739 - 0.963 0.776 - - - - - - signal peptide, CUB domain, EGF-like 2 [Source:ZFIN;Acc:ZDB-GENE-050302-80]
77. c5 ENSDARG00000021004 3536 1.736 0.848 - - - - - 0.888 - - complement component 5 [Source:ZFIN;Acc:ZDB-GENE-120510-2]
78. wu:fk48d07 wu:fk48d07 13245 1.736 - 0.829 - - - - 0.907 - -
79. sh3glb1 sh3glb1 1335 1.732 - 0.959 - - - - - 0.773 -
80. si:ch211-10d23.5 ENSDARG00000095510 2632 1.73 0.992 - - - - - - - 0.738 si:ch211-10d23.5 [Source:ZFIN;Acc:ZDB-GENE-090313-10]
81. mmd ENSDARG00000040387 4522 1.73 0.981 - - - - - 0.749 - - monocyte to macrophage differentiation-associated [Source:ZFIN;Acc:ZDB-GENE-051120-39]
82. aes ENSDARG00000021805, ENSDARG00000115836 1533 1.728 - - - - - - - 0.896 0.832 amino-terminal enhancer of split [Source:ZFIN;Acc:ZDB-GENE-040426-1409]
83. ppib ENSDARG00000092798 21969 1.723 0.809 - - - - - 0.914 - - peptidylprolyl isomerase B (cyclophilin B) [Source:ZFIN;Acc:ZDB-GENE-040426-1955]
84. hnrnpl2 ENSDARG00000059303, ENSDARG00000114431 6633 1.723 - 0.970 - - - 0.753 - - - heterogeneous nuclear ribonucleoprotein L2 [Source:ZFIN;Acc:ZDB-GENE-040426-2707]
85. kif11 ENSDARG00000010948 4973 1.722 - - 0.752 - - - 0.970 - - kinesin family member 11 [Source:ZFIN;Acc:ZDB-GENE-020426-1]
86. farp1 ENSDARG00000074381 406 1.72 - 0.957 - - 0.763 - - - - FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived) [Source:ZFIN;Acc:ZDB-GENE-070424-163]
87. arhgef1b ENSDARG00000055837 2330 1.718 - 0.954 - - 0.764 - - - - Rho guanine nucleotide exchange factor (GEF) 1b [Source:ZFIN;Acc:ZDB-GENE-060616-136]
88. cdc42se1 ENSDARG00000023724 3901 1.716 - 0.956 - - 0.760 - - - - CDC42 small effector 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9260]
89. lin7c ENSDARG00000027322 3083 1.714 - - - - - 0.749 0.965 - - lin-7 homolog C (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-041011-2]
90. otub1a ENSDARG00000055536 2892 1.713 - 0.960 - - - - - - 0.753 OTU deubiquitinase, ubiquitin aldehyde binding 1a [Source:ZFIN;Acc:ZDB-GENE-040718-108]
91. psme4b ENSDARG00000018742, ENSDARG00000112854, ENSDARG00000114902 2916 1.711 - 0.952 - - - - - 0.759 - proteasome activator subunit 4b [Source:ZFIN;Acc:ZDB-GENE-100316-4]
92. sf3b4 ENSDARG00000018574 7470 1.711 0.991 - 0.720 - - - - - - splicing factor 3b, subunit 4 [Source:ZFIN;Acc:ZDB-GENE-020419-22]
93. atp6v0d1 ENSDARG00000069090, ENSDARG00000115876 4797 1.707 - 0.937 - - - - - - 0.770 ATPase H+ transporting V0 subunit d1 [Source:ZFIN;Acc:ZDB-GENE-030131-1531]
94. arid1aa ENSDARG00000101710 3644 1.706 - - 0.736 - - - 0.970 - - AT rich interactive domain 1Aa (SWI-like) [Source:ZFIN;Acc:ZDB-GENE-080220-35]
95. hs6st2 ENSDARG00000012025 1145 1.705 - - - - - 0.743 0.962 - - heparan sulfate 6-O-sulfotransferase 2 [Source:ZFIN;Acc:ZDB-GENE-030909-14]
96. KIF2A ENSDARG00000043571 1560 1.702 - 0.959 - - - - - - 0.743 kinesin family member 2A [Source:HGNC Symbol;Acc:HGNC:6318]
97. nlk1 ENSDARG00000006566 1123 1.695 - - - - - 0.740 0.955 - - nemo-like kinase, type 1 [Source:ZFIN;Acc:ZDB-GENE-040701-1]
98. pcyt2 ENSDARG00000043003 3506 1.695 - - - - - 0.738 0.957 - - phosphate cytidylyltransferase 2, ethanolamine [Source:ZFIN;Acc:ZDB-GENE-041010-132]
99. fkbp8 ENSDARG00000001734 1709 1.694 - - - - - - 0.957 - 0.737 FK506 binding protein 8 [Source:ZFIN;Acc:ZDB-GENE-040426-1849]
100. hmgb1b ENSDARG00000030479 10398 1.688 - - 0.803 - 0.885 - - - - high mobility group box 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8480]

There are 1978 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA