Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for smarce1

Gene Name Gene ID Reads Annotation
smarce1 ENSDARG00000016871 9628 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-967]










Genes with expression patterns similar to smarce1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. smarce1 ENSDARG00000016871 9628 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-967]
2. srsf6b ENSDARG00000016783 9926 4.119 0.762 0.980 - 0.702 - 0.770 0.905 - - serine/arginine-rich splicing factor 6b [Source:ZFIN;Acc:ZDB-GENE-041219-1]
3. tia1 ENSDARG00000052536, ENSDARG00000114478 4392 4.052 0.789 0.987 - 0.743 - - 0.777 0.756 - TIA1 cytotoxic granule-associated RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-1506]
4. tes ENSDARG00000051857 2020 3.326 0.783 0.983 - - - 0.801 0.759 - - testis derived transcript (3 LIM domains) [Source:ZFIN;Acc:ZDB-GENE-040718-59]
5. vdac1 ENSDARG00000045132 8051 3.302 - - 0.836 - - 0.848 0.838 0.780 - voltage-dependent anion channel 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6514]
6. hmgb1b ENSDARG00000030479 10398 3.289 - - - - 0.823 0.828 0.816 - 0.822 high mobility group box 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8480]
7. kifc1 ENSDARG00000001558 6658 3.267 0.819 - 0.855 - - 0.729 0.864 - - kinesin family member C1 [Source:ZFIN;Acc:ZDB-GENE-000208-21]
8. tmpoa ENSDARG00000007315 3638 3.26 - 0.982 - 0.775 - 0.748 0.755 - - thymopoietin a [Source:ZFIN;Acc:ZDB-GENE-030131-6003]
9. xylt1 ENSDARG00000061248 2357 3.233 - 0.986 0.797 - - 0.749 0.701 - - xylosyltransferase I [Source:ZFIN;Acc:ZDB-GENE-111017-2]
10. pim1 ENSDARG00000100020 7035 3.225 0.721 0.991 - - - 0.736 0.777 - - Pim-1 proto-oncogene, serine/threonine kinase [Source:ZFIN;Acc:ZDB-GENE-061013-139]
11. MKI67 ENSDARG00000091150 11038 3.202 - - 0.819 - 0.805 0.735 0.843 - - marker of proliferation Ki-67 [Source:ZFIN;Acc:ZDB-GENE-030131-9771]
12. smarcd1 ENSDARG00000019004 6028 3.166 0.847 - - 0.712 - 0.767 0.840 - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1835]
13. zmiz1a ENSDARG00000074502 3920 3.151 - - - 0.701 - 0.704 0.772 - 0.974 zinc finger, MIZ-type containing 1a [Source:ZFIN;Acc:ZDB-GENE-080220-27]
14. tuba1c ENSDARG00000055216 8384 3.141 - - 0.890 - - 0.797 0.704 0.750 - tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
15. setb ENSDARG00000003920 21788 3.116 0.750 0.782 - - - 0.703 0.881 - - SET nuclear proto-oncogene b [Source:ZFIN;Acc:ZDB-GENE-030131-433]
16. TAF15 ENSDARG00000070019 5102 3.088 - - - 0.800 - 0.710 0.800 0.778 - TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-061215-102]
17. tardbpl ENSDARG00000004452, ENSDARG00000116205 12160 3.087 - - - 0.746 - 0.804 0.806 0.731 - TAR DNA binding protein, like [Source:ZFIN;Acc:ZDB-GENE-031030-1]
18. snrpb ENSDARG00000011125 11729 2.585 - - - - 0.865 - 0.744 - 0.976 small nuclear ribonucleoprotein polypeptides B and B1 [Source:ZFIN;Acc:ZDB-GENE-040426-1819]
19. HNRNPA2B1 HNRNPA2B1 14997 2.578 - 0.966 - 0.716 - - 0.896 - -
20. blcap ENSDARG00000052073 8646 2.576 - - - - - 0.855 0.757 - 0.964 bladder cancer associated protein [Source:ZFIN;Acc:ZDB-GENE-000330-7]
21. whsc1l1 8544 2.563 - 0.981 - - - 0.828 0.754 - - Wolf-Hirschhorn syndrome candidate 1-like 1, transcript variant X2
22. ctbp1 ENSDARG00000057007, ENSDARG00000115804 5795 2.548 0.817 - - - - 0.833 0.898 - - C-terminal binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-010130-1]
23. SERBP1 SERBP1 9276 2.54 0.837 - - - - 0.787 0.916 - -
24. metrn ENSDARG00000030367, ENSDARG00000112407, ENSDARG00000115842 7032 2.51 - - 0.875 - - 0.860 0.775 - - meteorin, glial cell differentiation regulator [Source:ZFIN;Acc:ZDB-GENE-050102-1]
25. znf865 ENSDARG00000036698 15532 2.51 - - - 0.778 - 0.897 0.835 - - zinc finger protein 865 [Source:ZFIN;Acc:ZDB-GENE-060503-896]
26. nova2 ENSDARG00000017673 7685 2.505 - - 0.887 - 0.811 0.807 - - - neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
27. LENG8 ENSDARG00000076805, ENSDARG00000113326 4021 2.501 0.756 - - - - - 0.796 - 0.949 leukocyte receptor cluster (LRC) member 8 [Source:ZFIN;Acc:ZDB-GENE-070410-6]
28. zc4h2 ENSDARG00000015314, ENSDARG00000112180 5141 2.487 - 0.991 - - - 0.783 - 0.713 - zinc finger, C4H2 domain containing [Source:ZFIN;Acc:ZDB-GENE-030131-2207]
29. snrpf ENSDARG00000105037 10241 2.473 - - - - 0.811 0.790 0.872 - - small nuclear ribonucleoprotein polypeptide F [Source:ZFIN;Acc:ZDB-GENE-040930-9]
30. atp2b4 5891 2.463 - 0.925 - - - 0.794 0.744 - - ATPase, Ca++ transporting, plasma membrane 4
31. ZFHX3 ENSDARG00000103057 7759 2.451 - - - - 0.843 0.822 0.786 - - zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
32. smarca4 smarca4 9726 2.442 - 0.866 - 0.751 - - 0.825 - -
33. appb ENSDARG00000055543, ENSDARG00000109552 4461 2.427 - - 0.850 - - 0.822 0.755 - - amyloid beta (A4) precursor protein b [Source:ZFIN;Acc:ZDB-GENE-020220-1]
34. npm1b ENSDARG00000037675 5448 2.418 - - 0.795 - - 0.839 0.784 - - nucleophosmin 1b [Source:ZFIN;Acc:ZDB-GENE-080723-7]
35. gsk3b ENSDARG00000017803 3438 2.414 - 0.979 - - - 0.726 0.709 - - glycogen synthase kinase 3 beta [Source:ZFIN;Acc:ZDB-GENE-990714-4]
36. pl10 pl10 10795 2.388 - - 0.723 - - 0.865 0.800 - -
37. boc ENSDARG00000074335 4832 2.378 0.720 0.823 - - - - 0.835 - - BOC cell adhesion associated, oncogene regulated [Source:ZFIN;Acc:ZDB-GENE-030131-6560]
38. wu:fb17g07 wu:fb17g07 10567 2.37 - - 0.826 - - 0.781 0.763 - -
39. srsf3a ENSDARG00000025397, ENSDARG00000100815 11622 2.369 - - - - 0.783 0.818 0.768 - - serine/arginine-rich splicing factor 3a [Source:ZFIN;Acc:ZDB-GENE-030616-631]
40. ssbp4 ENSDARG00000056483 10196 2.369 - - - - - 0.734 0.848 0.787 - single stranded DNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-030131-469]
41. fscn1a ENSDARG00000059680 3999 2.368 - - - - - 0.765 0.790 0.813 - fascin actin-bundling protein 1a [Source:ZFIN;Acc:ZDB-GENE-031009-1]
42. tox ENSDARG00000032317 9126 2.363 - - 0.895 - - 0.722 0.746 - - thymocyte selection-associated high mobility group box [Source:ZFIN;Acc:ZDB-GENE-070912-181]
43. h2afva ENSDARG00000068820 16427 2.357 - - 0.782 - - 0.727 0.848 - - H2A histone family, member Va [Source:ZFIN;Acc:ZDB-GENE-020717-1]
44. akirin2 ENSDARG00000058729 13245 2.355 - - 0.761 0.814 - - 0.780 - - akirin 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2944]
45. mcm7 ENSDARG00000101180 12417 2.348 0.785 - 0.709 - - - 0.854 - - minichromosome maintenance complex component 7 [Source:ZFIN;Acc:ZDB-GENE-020419-27]
46. chd7 ENSDARG00000075211 12085 2.344 0.759 - - - - 0.785 0.800 - - chromodomain helicase DNA binding protein 7 [Source:ZFIN;Acc:ZDB-GENE-070912-179]
47. rbm25 rbm25 3629 2.343 0.795 - - - - 0.798 0.750 - -
48. ewsr1b ENSDARG00000020465, ENSDARG00000117011 10260 2.333 - - - 0.757 - 0.750 0.826 - - EWS RNA-binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-030131-1600]
49. tdg tdg 3269 2.331 - - 0.797 - 0.708 0.826 - - -
50. cd99l2 ENSDARG00000056722 5036 2.323 - - 0.813 - - 0.809 0.701 - - CD99 molecule-like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1986]
51. scrt2 ENSDARG00000056175 4331 2.32 - - - - 0.767 0.789 - 0.764 - scratch family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4097]
52. rnf2 ENSDARG00000010381 3427 2.313 - - 0.786 - - 0.797 0.730 - - ring finger protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5243]
53. ilf3b ENSDARG00000105177 9473 2.313 - - - 0.762 - - 0.799 0.752 - interleukin enhancer binding factor 3b [Source:ZFIN;Acc:ZDB-GENE-030131-587]
54. gap43 ENSDARG00000099744 4114 2.303 - - - - - 0.789 0.701 0.813 - growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
55. fam60al 2846 2.288 - - - 0.704 - 0.800 0.784 - - family with sequence similarity 60, member A, like
56. pak2b ENSDARG00000018476 4331 2.285 - - - 0.705 - 0.804 0.776 - - p21 protein (Cdc42/Rac)-activated kinase 2b [Source:ZFIN;Acc:ZDB-GENE-030131-3759]
57. srsf4 ENSDARG00000105293 9657 2.284 - - 0.846 - - 0.706 0.732 - - serine/arginine-rich splicing factor 4 [Source:ZFIN;Acc:ZDB-GENE-030131-591]
58. bcl11ab ENSDARG00000063153 3032 2.283 - - - 0.739 - 0.801 0.743 - - B cell CLL/lymphoma 11Ab [Source:ZFIN;Acc:ZDB-GENE-061009-4]
59. cpsf3 ENSDARG00000027649 6897 2.274 - - 0.835 0.707 - - 0.732 - - cleavage and polyadenylation specific factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-3275]
60. ubr5 ENSDARG00000018192 9267 2.272 - - - 0.747 - - 0.759 0.766 - ubiquitin protein ligase E3 component n-recognin 5 [Source:ZFIN;Acc:ZDB-GENE-030131-6559]
61. peli1b ENSDARG00000044083, ENSDARG00000112797 3801 2.272 - - - - 0.746 0.821 0.705 - - pellino E3 ubiquitin protein ligase 1b [Source:ZFIN;Acc:ZDB-GENE-061027-372]
62. marcksa ENSDARG00000004049 2518 2.269 - - - - - 0.803 0.745 0.721 - myristoylated alanine-rich protein kinase C substrate a [Source:ZFIN;Acc:ZDB-GENE-050522-145]
63. rab6bb ENSDARG00000031343 1381 2.268 0.813 - - - - 0.742 0.713 - - RAB6B, member RAS oncogene family b [Source:ZFIN;Acc:ZDB-GENE-050320-28]
64. ash2l ENSDARG00000060392 4916 2.253 0.749 - - - - 0.749 0.755 - - ash2 like, histone lysine methyltransferase complex subunit [Source:ZFIN;Acc:ZDB-GENE-030131-494]
65. onecut1 ENSDARG00000007982, ENSDARG00000112251 6307 2.25 - - - 0.721 - 0.824 0.705 - - one cut homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1469]
66. zgc:123105 ENSDARG00000003127 3061 2.245 0.708 - - - - 0.701 0.836 - - zgc:123105 [Source:ZFIN;Acc:ZDB-GENE-051113-272]
67. dpysl3 ENSDARG00000002587 4381 2.243 - - - - 0.715 0.774 0.754 - - dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
68. cnn3b ENSDARG00000029856 4807 2.242 - - - - 0.704 0.768 0.770 - - calponin 3, acidic b [Source:ZFIN;Acc:ZDB-GENE-050522-263]
69. ldb1a ENSDARG00000010137 3035 2.24 - - 0.832 - - - 0.708 0.700 - LIM domain binding 1a [Source:ZFIN;Acc:ZDB-GENE-990415-138]
70. CABZ01072954.1 CABZ01072954.1 2330 2.238 - - 0.780 - - 0.751 0.707 - -
71. brd3b ENSDARG00000100129 6387 2.236 - - - - - 0.728 0.764 0.744 - bromodomain containing 3b [Source:ZFIN;Acc:ZDB-GENE-030131-5316]
72. lmnb1 ENSDARG00000044299 9817 2.231 - - - - 0.752 - 0.733 0.746 - lamin B1 [Source:ZFIN;Acc:ZDB-GENE-020424-2]
73. C7H4orf48 C7H4orf48 1455 2.23 - - - - - 0.782 0.702 0.746 -
74. plk1 ENSDARG00000058471, ENSDARG00000111745 7020 2.228 0.808 - - - - 0.706 0.714 - - polo-like kinase 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-021115-7]
75. foxk2 ENSDARG00000030583 2982 2.222 0.701 - - - - 0.776 0.745 - - forkhead box K2 [Source:ZFIN;Acc:ZDB-GENE-030131-2861]
76. polb ENSDARG00000003749 2049 2.212 - - 0.781 - - 0.711 0.720 - - polymerase (DNA directed), beta [Source:ZFIN;Acc:ZDB-GENE-040830-1]
77. tmem198a ENSDARG00000042115 1694 2.202 - - - - - 0.728 0.703 0.771 - transmembrane protein 198a [Source:ZFIN;Acc:ZDB-GENE-070912-716]
78. RLTPR 1158 2.179 - - - - - 0.722 0.756 0.701 - RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing, transcript variant X1
79. epha4b ENSDARG00000011600 3110 2.172 - - - 0.707 - 0.763 0.702 - - eph receptor A4b [Source:ZFIN;Acc:ZDB-GENE-030826-6]
80. ep300b ENSDARG00000061108 5173 2.168 - - - 0.729 0.719 0.720 - - - E1A binding protein p300 b [Source:ZFIN;Acc:ZDB-GENE-080403-15]
81. wu:fc51f04 wu:fc51f04 7074 2.143 - - 0.715 0.702 - - - 0.726 -
82. tcea1 ENSDARG00000003531 2912 2.127 - - - 0.707 0.713 0.707 - - - transcription elongation factor A (SII), 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8049]
83. psmd11a ENSDARG00000060150 4529 1.841 - 0.990 - - - 0.851 - - - proteasome 26S subunit, non-ATPase 11a [Source:ZFIN;Acc:ZDB-GENE-030131-2711]
84. matr3l1.1 ENSDARG00000000394, ENSDARG00000001162 3757 1.832 - 0.986 - - - 0.846 - - - matrin 3-like 1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-40]
85. setbp1 ENSDARG00000093799 4499 1.829 - 0.988 - - - 0.841 - - - SET binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-060526-72]
86. SSBP4 ENSDARG00000056483 5156 1.828 - - - - - - 0.848 - 0.980 single stranded DNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-030131-469]
87. fbxo28 ENSDARG00000027159 9602 1.826 - 0.963 0.863 - - - - - - F-box protein 28 [Source:ZFIN;Acc:ZDB-GENE-030131-4665]
88. acin1a ENSDARG00000054290 14023 1.818 - 0.979 - - - - 0.839 - - apoptotic chromatin condensation inducer 1a [Source:ZFIN;Acc:ZDB-GENE-030616-583]
89. gfap ENSDARG00000025301 5584 1.804 - 0.984 - - - 0.820 - - - glial fibrillary acidic protein [Source:ZFIN;Acc:ZDB-GENE-990914-3]
90. nkain1 ENSDARG00000006859 1961 1.801 - 0.985 - - - 0.816 - - - sodium/potassium transporting ATPase interacting 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1472]
91. BX511086.1 BX511086.1 8308 1.793 - - - - - 0.869 0.924 - -
92. rab14 ENSDARG00000074246 4084 1.79 - - - - - - 0.818 - 0.972 RAB14, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-030826-20]
93. cks1b ENSDARG00000007971 2739 1.788 0.800 0.988 - - - - - - - CDC28 protein kinase regulatory subunit 1B [Source:ZFIN;Acc:ZDB-GENE-040801-112]
94. max ENSDARG00000024844 6035 1.778 - 0.983 0.795 - - - - - - myc associated factor X [Source:ZFIN;Acc:ZDB-GENE-990415-152]
95. ANKRD11 ENSDARG00000051886 10024 1.775 - - - - - 0.900 0.875 - - ankyrin repeat domain 11 [Source:ZFIN;Acc:ZDB-GENE-030131-3932]
96. CPEB4 CPEB4 3249 1.754 - 0.982 - - - - 0.772 - -
97. acap3a ENSDARG00000075990 9652 1.749 - 0.988 - - - - 0.761 - - ArfGAP with coiled-coil, ankyrin repeat and PH domains 3a [Source:ZFIN;Acc:ZDB-GENE-030131-1711]
98. khsrp ENSDARG00000026489 15738 1.745 - - - - - 0.879 0.866 - - KH-type splicing regulatory protein [Source:ZFIN;Acc:ZDB-GENE-030131-4357]
99. sumo3a ENSDARG00000028119 13447 1.744 - - - - - 0.896 0.848 - - small ubiquitin-like modifier 3a [Source:ZFIN;Acc:ZDB-GENE-040426-2133]
100. samm50l ENSDARG00000039681 2465 1.739 - 0.988 0.751 - - - - - - sorting and assembly machinery component 50 homolog, like [Source:ZFIN;Acc:ZDB-GENE-041114-30]

There are 1681 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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