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Results for smarcd1

Gene Name Gene ID Reads Annotation
smarcd1 ENSDARG00000019004 6028 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1835]










Genes with expression patterns similar to smarcd1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. smarcd1 ENSDARG00000019004 6028 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1835]
2. hmgb3a ENSDARG00000056725 15668 3.236 - - - - 0.738 0.762 0.842 - 0.894 high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
3. uba1 ENSDARG00000037559 11579 3.179 - 0.728 - - 0.779 0.825 0.847 - - ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
4. smarce1 ENSDARG00000016871 9628 3.166 0.847 - - 0.712 - 0.767 0.840 - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-967]
5. tia1 ENSDARG00000052536, ENSDARG00000114478 4392 3.165 0.795 - - 0.802 0.747 - 0.821 - - TIA1 cytotoxic granule-associated RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-1506]
6. ctbp1 ENSDARG00000057007, ENSDARG00000115804 5795 3.162 0.924 - - - - 0.719 0.781 - 0.738 C-terminal binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-010130-1]
7. nova2 ENSDARG00000017673 7685 3.131 - - - 0.806 - 0.701 0.763 - 0.861 neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
8. mbd3b ENSDARG00000042029, ENSDARG00000061810 4561 3.131 - - - 0.738 0.750 - 0.848 - 0.795 methyl-CpG binding domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9792]
9. stag2b ENSDARG00000053668, ENSDARG00000109728 7193 3.095 - 0.761 - 0.706 - - 0.726 - 0.902 stromal antigen 2b [Source:ZFIN;Acc:ZDB-GENE-030131-2785]
10. hnrnpub ENSDARG00000004735 16496 3.074 - - - 0.796 - 0.711 0.807 - 0.760 heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
11. tpx2 ENSDARG00000078654 8120 3.056 - 0.780 - - 0.770 0.726 0.780 - - TPX2, microtubule-associated, homolog (Xenopus laevis) [Source:ZFIN;Acc:ZDB-GENE-030131-9652]
12. srsf6b ENSDARG00000016783 9926 3.028 - - - 0.712 0.747 - 0.829 - 0.740 serine/arginine-rich splicing factor 6b [Source:ZFIN;Acc:ZDB-GENE-041219-1]
13. SMAD4 SMAD4 3233 3.026 0.787 - - 0.732 0.714 - - - 0.793
14. znf865 ENSDARG00000036698 15532 3.024 - - - 0.810 - 0.730 0.759 - 0.725 zinc finger protein 865 [Source:ZFIN;Acc:ZDB-GENE-060503-896]
15. myt1b ENSDARG00000102879 5411 3.016 - - - 0.777 - 0.701 0.724 - 0.814 myelin transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-090313-67]
16. fam60al 2846 3.012 - - - - 0.712 0.750 0.742 - 0.808 family with sequence similarity 60, member A, like
17. smc1al ENSDARG00000058203 8838 3.005 - 0.738 - - - 0.752 0.744 - 0.771 structural maintenance of chromosomes 1A, like [Source:ZFIN;Acc:ZDB-GENE-040426-57]
18. bcl11ab ENSDARG00000063153 3032 3.004 - - - 0.783 - 0.738 0.777 - 0.706 B cell CLL/lymphoma 11Ab [Source:ZFIN;Acc:ZDB-GENE-061009-4]
19. mxi1 ENSDARG00000040884, ENSDARG00000111950 3239 2.997 0.757 - - 0.731 0.733 - 0.776 - - max interactor 1, dimerization protein [Source:ZFIN;Acc:ZDB-GENE-990415-151]
20. vezf1a ENSDARG00000008247 1449 2.981 - - - 0.720 0.722 0.760 0.779 - - vascular endothelial zinc finger 1a [Source:ZFIN;Acc:ZDB-GENE-040108-4]
21. khsrp ENSDARG00000026489 15738 2.489 - - - - - 0.846 0.863 - 0.780 KH-type splicing regulatory protein [Source:ZFIN;Acc:ZDB-GENE-030131-4357]
22. tle2 5014 2.482 - - - 0.836 0.815 - 0.831 - - transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila), transcript variant X4
23. whsc1l1 8544 2.458 - - - - - 0.776 0.805 - 0.877 Wolf-Hirschhorn syndrome candidate 1-like 1, transcript variant X2
24. srsf9 ENSDARG00000008097 2405 2.441 0.925 - - - - 0.759 - - 0.757 serine/arginine-rich splicing factor 9 [Source:ZFIN;Acc:ZDB-GENE-040426-2397]
25. rab6bb ENSDARG00000031343 1381 2.419 0.932 - - - - 0.754 0.733 - - RAB6B, member RAS oncogene family b [Source:ZFIN;Acc:ZDB-GENE-050320-28]
26. sumo3a ENSDARG00000028119 13447 2.411 - - - - - 0.746 0.885 - 0.780 small ubiquitin-like modifier 3a [Source:ZFIN;Acc:ZDB-GENE-040426-2133]
27. MKI67 ENSDARG00000091150 11038 2.378 - - - - - 0.766 0.833 - 0.779 marker of proliferation Ki-67 [Source:ZFIN;Acc:ZDB-GENE-030131-9771]
28. cd99l2 ENSDARG00000056722 5036 2.369 - - - 0.818 - - 0.701 - 0.850 CD99 molecule-like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1986]
29. tmpob ENSDARG00000022978 8121 2.368 - - - 0.711 - - 0.846 - 0.811 thymopoietin b [Source:ZFIN;Acc:ZDB-GENE-050522-8]
30. rimkla ENSDARG00000016830, ENSDARG00000112193 4111 2.367 - - - - - 0.788 0.860 - 0.719 ribosomal modification protein rimK-like family member A [Source:ZFIN;Acc:ZDB-GENE-040912-20]
31. FP016176.1 FP016176.1 7030 2.36 - - - - - 0.753 0.901 - 0.706
32. snrpf ENSDARG00000105037 10241 2.354 - - - 0.791 - 0.725 0.838 - - small nuclear ribonucleoprotein polypeptide F [Source:ZFIN;Acc:ZDB-GENE-040930-9]
33. cul4b ENSDARG00000060510 6053 2.35 - - - - - 0.788 0.736 - 0.826 cullin 4B [Source:ZFIN;Acc:ZDB-GENE-041008-208]
34. IM:7163548 IM:7163548 6540 2.339 - - - - - 0.704 0.797 - 0.838
35. GATAD2B ENSDARG00000005834 3855 2.338 0.839 - - - - 0.730 0.769 - - GATA zinc finger domain containing 2B [Source:ZFIN;Acc:ZDB-GENE-060503-655]
36. kif15 ENSDARG00000012073 1936 2.335 - - - 0.762 0.778 0.795 - - - kinesin family member 15 [Source:ZFIN;Acc:ZDB-GENE-050622-16]
37. ptprna ENSDARG00000058646 1327 2.334 - - - - 0.763 0.810 0.761 - - protein tyrosine phosphatase, receptor type, Na [Source:ZFIN;Acc:ZDB-GENE-030131-3511]
38. plk1 ENSDARG00000058471, ENSDARG00000111745 7020 2.331 0.805 - - - 0.750 - 0.776 - - polo-like kinase 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-021115-7]
39. cdca7a ENSDARG00000077620 9345 2.329 - - - 0.777 0.820 0.732 - - - cell division cycle associated 7a [Source:ZFIN;Acc:ZDB-GENE-050417-29]
40. carm1 ENSDARG00000018698 5599 2.326 - - - - 0.802 0.720 - - 0.804 coactivator-associated arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040724-77]
41. ash2l ENSDARG00000060392 4916 2.325 0.811 - - 0.773 - - 0.741 - - ash2 like, histone lysine methyltransferase complex subunit [Source:ZFIN;Acc:ZDB-GENE-030131-494]
42. mcm7 ENSDARG00000101180 12417 2.324 0.805 - - 0.709 - - 0.810 - - minichromosome maintenance complex component 7 [Source:ZFIN;Acc:ZDB-GENE-020419-27]
43. smarca5 ENSDARG00000052348 15433 2.324 - - - - - 0.736 0.793 - 0.795 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 [Source:ZFIN;Acc:ZDB-GENE-021125-1]
44. mta2 ENSDARG00000013031 2932 2.311 - - - - 0.737 - 0.764 - 0.810 metastasis associated 1 family, member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4803]
45. LIG1 ENSDARG00000060041, ENSDARG00000110159, ENSDARG00000113788 8110 2.309 - - - 0.802 - 0.708 0.799 - - ligase I, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-110404-2]
46. lfng ENSDARG00000037879 11783 2.303 - - - 0.842 - 0.721 - - 0.740 LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:ZFIN;Acc:ZDB-GENE-980605-16]
47. puf60b ENSDARG00000001241 13827 2.3 - - - 0.793 - 0.731 - - 0.776 poly-U binding splicing factor b [Source:ZFIN;Acc:ZDB-GENE-040625-116]
48. fscn1a ENSDARG00000059680 3999 2.3 - - - 0.813 - 0.700 - - 0.787 fascin actin-bundling protein 1a [Source:ZFIN;Acc:ZDB-GENE-031009-1]
49. cspg5a ENSDARG00000069981 1699 2.294 - - - 0.751 - - 0.771 - 0.772 chondroitin sulfate proteoglycan 5a [Source:ZFIN;Acc:ZDB-GENE-080425-4]
50. stmn1b ENSDARG00000033655 9491 2.293 - - - 0.713 - - 0.777 - 0.803 stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
51. lsm14ab ENSDARG00000100553 3837 2.288 - 0.811 - - - 0.737 0.740 - - LSM14A mRNA processing body assembly factor b [Source:ZFIN;Acc:ZDB-GENE-040426-2462]
52. rrm1 ENSDARG00000014017 7296 2.285 - - - 0.746 - - 0.770 - 0.769 ribonucleotide reductase M1 polypeptide [Source:ZFIN;Acc:ZDB-GENE-990415-247]
53. fyna ENSDARG00000011370 1679 2.277 - - - 0.763 - - 0.753 - 0.761 FYN proto-oncogene, Src family tyrosine kinase a [Source:ZFIN;Acc:ZDB-GENE-030903-5]
54. slc29a1a ENSDARG00000101289 2074 2.273 - - - 0.708 0.814 - - - 0.751 solute carrier family 29 (equilibrative nucleoside transporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-050913-138]
55. kifc1 ENSDARG00000001558 6658 2.271 0.832 - - - - 0.710 0.729 - - kinesin family member C1 [Source:ZFIN;Acc:ZDB-GENE-000208-21]
56. tuba1c ENSDARG00000055216 8384 2.27 - - - - 0.755 - 0.735 - 0.780 tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
57. cpsf6 ENSDARG00000018618 3923 2.268 - - - 0.766 0.720 - 0.782 - - cleavage and polyadenylation specific factor 6 [Source:ZFIN;Acc:ZDB-GENE-030131-5277]
58. SSBP4 ENSDARG00000056483 5156 2.268 - - - - 0.736 0.705 0.827 - - single stranded DNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-030131-469]
59. arnt2 ENSDARG00000103697 5731 2.264 - - - - 0.712 - 0.787 - 0.765 aryl-hydrocarbon receptor nuclear translocator 2 [Source:ZFIN;Acc:ZDB-GENE-001207-3]
60. kif22 ENSDARG00000102624 3694 2.263 - - - 0.750 - 0.756 0.757 - - kinesin family member 22 [Source:ZFIN;Acc:ZDB-GENE-080204-34]
61. TUBA1A ENSDARG00000001889 25294 2.262 - - - 0.770 - 0.723 0.769 - - tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
62. dpysl2b ENSDARG00000032083, ENSDARG00000109782 3487 2.261 - - - 0.713 - - 0.816 - 0.732 dihydropyrimidinase-like 2b [Source:ZFIN;Acc:ZDB-GENE-031105-1]
63. nusap1 ENSDARG00000002403 6953 2.261 - - - - 0.727 0.754 0.780 - - nucleolar and spindle associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-030827-5]
64. myt1a ENSDARG00000074030, ENSDARG00000116035 2839 2.255 - - - - - 0.741 0.729 - 0.785 myelin transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3885]
65. lypla2 ENSDARG00000053656 8971 2.246 - - - - - 0.811 0.724 - 0.711 lysophospholipase II [Source:ZFIN;Acc:ZDB-GENE-040426-1715]
66. ptena ENSDARG00000071018, ENSDARG00000114986, ENSDARG00000115966 6610 2.245 - - - - 0.704 0.715 0.826 - - phosphatase and tensin homolog A [Source:ZFIN;Acc:ZDB-GENE-030131-3776]
67. metrn ENSDARG00000030367, ENSDARG00000112407, ENSDARG00000115842 7032 2.244 - - - 0.722 - 0.705 0.817 - - meteorin, glial cell differentiation regulator [Source:ZFIN;Acc:ZDB-GENE-050102-1]
68. dpysl3 ENSDARG00000002587 4381 2.241 - - - - - 0.732 0.762 - 0.747 dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
69. smarcc1a ENSDARG00000017397 2957 2.24 - - - 0.771 0.730 - - - 0.739 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1a [Source:ZFIN;Acc:ZDB-GENE-080514-3]
70. pcdh19 ENSDARG00000034344 2378 2.236 - - - 0.749 0.754 - 0.733 - - protocadherin 19 [Source:ZFIN;Acc:ZDB-GENE-030131-4218]
71. rnps1 ENSDARG00000116743 9994 2.232 - - - - 0.769 0.700 0.763 - - RNA binding protein S1, serine-rich domain [Source:NCBI gene;Acc:327020]
72. npm1b ENSDARG00000037675 5448 2.23 - - - - - 0.776 0.718 - 0.736 nucleophosmin 1b [Source:ZFIN;Acc:ZDB-GENE-080723-7]
73. snrpc ENSDARG00000009871 9567 2.23 - - - 0.775 - - 0.720 - 0.735 small nuclear ribonucleoprotein polypeptide C [Source:ZFIN;Acc:ZDB-GENE-020419-26]
74. pou3f1 ENSDARG00000009823, ENSDARG00000112302 7037 2.215 - - - 0.729 - 0.713 - - 0.773 POU class 3 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-372]
75. peli1b ENSDARG00000044083, ENSDARG00000112797 3801 2.213 - - - 0.710 - - 0.801 - 0.702 pellino E3 ubiquitin protein ligase 1b [Source:ZFIN;Acc:ZDB-GENE-061027-372]
76. foxn4 ENSDARG00000010591 2332 2.21 - - - 0.716 - - 0.739 - 0.755 forkhead box N4 [Source:ZFIN;Acc:ZDB-GENE-990415-277]
77. sf3b1 ENSDARG00000056138 5785 2.201 - - - - 0.756 - 0.701 - 0.744 splicing factor 3b, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-040827-3]
78. zswim5 ENSDARG00000055900 4243 2.19 - - - 0.707 - - 0.702 - 0.781 zinc finger, SWIM-type containing 5 [Source:ZFIN;Acc:ZDB-GENE-030925-30]
79. tra2a ENSDARG00000007863 4449 2.184 - - - 0.726 - 0.746 0.712 - - transformer 2 alpha homolog [Source:ZFIN;Acc:ZDB-GENE-040426-1391]
80. msi1 ENSDARG00000010710 2634 2.148 - - - - - 0.700 0.702 - 0.746 musashi RNA-binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050320-86]
81. TAF15 ENSDARG00000070019 5102 2.147 - 0.707 - - 0.721 - 0.719 - - TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-061215-102]
82. rbm4.2 ENSDARG00000055080 5241 2.139 - 0.714 - 0.714 - - - - 0.711 RNA binding motif protein 4.2 [Source:ZFIN;Acc:ZDB-GENE-030131-3019]
83. top1l ENSDARG00000070545 40529 1.772 - - - 0.879 - - 0.893 - - DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
84. HNRNPAB HNRNPAB 22267 1.738 - - - - - - 0.884 - 0.854
85. hdac1 ENSDARG00000015427 19804 1.684 - - - - - 0.894 - - 0.790 histone deacetylase 1 [Source:ZFIN;Acc:ZDB-GENE-020419-32]
86. ssbp3b ENSDARG00000030155 7163 1.684 - 0.846 - - - - - - 0.838 single stranded DNA binding protein 3b [Source:ZFIN;Acc:ZDB-GENE-040426-2801]
87. hoxa9b ENSDARG00000056819 3081 1.677 - - - - - 0.820 0.857 - - homeobox A9b [Source:ZFIN;Acc:ZDB-GENE-000823-2]
88. fmnl2b ENSDARG00000075041 1744 1.676 0.909 - - - - 0.767 - - - formin-like 2b [Source:ZFIN;Acc:ZDB-GENE-041111-182]
89. sp8b ENSDARG00000056666 3988 1.666 - - - - - 0.854 0.812 - - sp8 transcription factor b [Source:ZFIN;Acc:ZDB-GENE-030131-3654]
90. sfpq ENSDARG00000011564, ENSDARG00000115611 15626 1.658 - - - 0.774 - - 0.884 - - splicing factor proline/glutamine-rich [Source:ZFIN;Acc:ZDB-GENE-040426-2452]
91. zgc:174906 ENSDARG00000075314 2187 1.657 0.872 - - - - - 0.785 - - zgc:174906 [Source:ZFIN;Acc:ZDB-GENE-030131-6125]
92. HNRNPA2B1 HNRNPA2B1 14997 1.655 - - - 0.731 - - 0.924 - -
93. tes ENSDARG00000051857 2020 1.653 0.915 - - - - 0.738 - - - testis derived transcript (3 LIM domains) [Source:ZFIN;Acc:ZDB-GENE-040718-59]
94. supt16h ENSDARG00000079949 4755 1.643 0.888 - - - - - 0.755 - - SPT16 homolog, facilitates chromatin remodeling subunit [Source:ZFIN;Acc:ZDB-GENE-031118-96]
95. hnrnpm ENSDARG00000061735 19428 1.637 - - - 0.784 - - - - 0.853 heterogeneous nuclear ribonucleoprotein M [Source:ZFIN;Acc:ZDB-GENE-030131-6898]
96. wu:fq41a10 wu:fq41a10 7009 1.632 - - - 0.824 - - 0.808 - -
97. TNRC6A ENSDARG00000079688 14433 1.629 - - - - - 0.801 0.828 - - trinucleotide repeat containing 6a [Source:ZFIN;Acc:ZDB-GENE-030131-2519]
98. SNX2 ENSDARG00000104128 1501 1.626 0.829 0.797 - - - - - - - sorting nexin 2 [Source:ZFIN;Acc:ZDB-GENE-051120-45]
99. kpnb3 ENSDARG00000040245 7967 1.625 0.923 - - 0.702 - - - - - karyopherin (importin) beta 3 [Source:ZFIN;Acc:ZDB-GENE-030424-2]
100. atp2b4 5891 1.623 - - - - - 0.816 0.807 - - ATPase, Ca++ transporting, plasma membrane 4

There are 1512 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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