Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for smarcc1b

Gene Name Gene ID Reads Annotation
smarcc1b ENSDARG00000098919 770 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1b [Source:ZFIN;Acc:ZDB-GENE-060503-273]










Genes with expression patterns similar to smarcc1b

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. smarcc1b ENSDARG00000098919 770 8 1.000 - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1b [Source:ZFIN;Acc:ZDB-GENE-060503-273]
2. grk4_1 ENSDARG00000070448 511 1.67 - - - 0.749 - - 0.921 - - G protein-coupled receptor kinase 4 [Source:ZFIN;Acc:ZDB-GENE-060929-1198]
3. kctd2 ENSDARG00000025875, ENSDARG00000114216 802 1.642 0.861 - - - - - 0.781 - - potassium channel tetramerization domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-060825-85]
4. col4a4 ENSDARG00000002831 803 1.597 0.803 - - - - - 0.794 - - collagen, type IV, alpha 4 [Source:ZFIN;Acc:ZDB-GENE-101001-1]
5. srrt ENSDARG00000017762, ENSDARG00000114824 2158 1.546 - - - - - - 0.783 - 0.763 serrate RNA effector molecule homolog (Arabidopsis) [Source:ZFIN;Acc:ZDB-GENE-020419-13]
6. CCNA2 ENSDARG00000011094 3996 1.544 0.737 - 0.807 - - - - - - cyclin A2 [Source:ZFIN;Acc:ZDB-GENE-020418-1]
7. commd5 ENSDARG00000029660 517 1.502 0.731 - - - - 0.771 - - - COMM domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-040801-71]
8. mospd1 ENSDARG00000028614, ENSDARG00000112883 697 1.492 - - - - - 0.787 - 0.705 - motile sperm domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2691]
9. GPN1 ENSDARG00000043928 566 1.487 - - - - - 0.731 - 0.756 - GPN-loop GTPase 1 [Source:ZFIN;Acc:ZDB-GENE-040801-154]
10. mrpl28 ENSDARG00000057805, ENSDARG00000109307, ENSDARG00000115867 1325 1.46 0.714 - - - - 0.746 - - - mitochondrial ribosomal protein L28 [Source:ZFIN;Acc:ZDB-GENE-050522-113]
11. nr2f1a ENSDARG00000052695 5037 1.456 0.752 - - - - - - - 0.704 nuclear receptor subfamily 2, group F, member 1a [Source:ZFIN;Acc:ZDB-GENE-980526-115]
12. znf395b ENSDARG00000024195 342 1.45 - - - - - 0.737 0.713 - - zinc finger protein 395b [Source:ZFIN;Acc:ZDB-GENE-041001-193]
13. fam60al_1 949 1.437 - - - - - - 0.715 0.722 - family with sequence similarity 60, member A, like
14. ldb1a ENSDARG00000010137 3035 1.41 - - - - - - - 0.709 0.701 LIM domain binding 1a [Source:ZFIN;Acc:ZDB-GENE-990415-138]
15. sumo3a ENSDARG00000028119 13447 1.407 0.705 - - - - - - - 0.702 small ubiquitin-like modifier 3a [Source:ZFIN;Acc:ZDB-GENE-040426-2133]
16. rabl3 ENSDARG00000040959 271 0.953 - - - - - - 0.953 - - RAB, member of RAS oncogene family-like 3 [Source:ZFIN;Acc:ZDB-GENE-040808-11]
17. rusc2 ENSDARG00000095288 649 0.935 - - - - - - 0.935 - - RUN and SH3 domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-060526-131]
18. CARD11 ENSDARG00000052741 249 0.935 - - - - - - 0.935 - - caspase recruitment domain family, member 11 [Source:ZFIN;Acc:ZDB-GENE-100219-1]
19. C21HXorf40A C21HXorf40A 216 0.927 - - - - - - 0.927 - -
20. phactr2 ENSDARG00000027172 306 0.914 - - - - - - 0.914 - - phosphatase and actin regulator 2 [Source:ZFIN;Acc:ZDB-GENE-040724-11]
21. ATP6AP1L_1 ATP6AP1L_1 508 0.913 - - - - - - 0.913 - -
22. cdk13 ENSDARG00000076791 828 0.913 - - - - - - 0.913 - - cyclin-dependent kinase 13 [Source:ZFIN;Acc:ZDB-GENE-030131-4975]
23. ANKS3 ENSDARG00000038557 235 0.912 - - - - - - 0.912 - - ankyrin repeat and sterile alpha motif domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-080204-51]
24. cryzl1 ENSDARG00000026902 401 0.905 - - - - - - 0.905 - - crystallin, zeta (quinone reductase)-like 1 [Source:ZFIN;Acc:ZDB-GENE-040718-378]
25. pdxdc1 ENSDARG00000101886 1958 0.905 - - - - - - 0.905 - - pyridoxal-dependent decarboxylase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040912-16]
26. icmt ENSDARG00000020241, ENSDARG00000110063 598 0.9 - - - - - - 0.900 - - isoprenylcysteine carboxyl methyltransferase [Source:ZFIN;Acc:ZDB-GENE-050417-90]
27. ces3 ENSDARG00000041595, ENSDARG00000114555 647 0.899 - - - - - - 0.899 - - carboxylesterase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9563]
28. ccs ENSDARG00000092003, ENSDARG00000116246 227 0.899 - - - - - - 0.899 - - copper chaperone for superoxide dismutase [Source:ZFIN;Acc:ZDB-GENE-050417-322]
29. zfyve27 ENSDARG00000059835 604 0.894 - - - - - - 0.894 - - zinc finger, FYVE domain containing 27 [Source:ZFIN;Acc:ZDB-GENE-061013-502]
30. zwilch ENSDARG00000057100 408 0.892 - - - - - - 0.892 - - zwilch kinetochore protein [Source:ZFIN;Acc:ZDB-GENE-050420-101]
31. ing3 ENSDARG00000034326 1326 0.888 - - - - - - 0.888 - - inhibitor of growth family, member 3 [Source:ZFIN;Acc:ZDB-GENE-040109-3]
32. CCNJL ENSDARG00000077116 1197 0.887 - - - - - - 0.887 - - cyclin J-like [Source:ZFIN;Acc:ZDB-GENE-030131-9888]
33. cmasb 499 0.886 - - - - - - 0.886 - - cytidine monophosphate N-acetylneuraminic acid synthetase b
34. mier1b ENSDARG00000001447 1680 0.885 - - - - - - 0.885 - - mesoderm induction early response 1b, transcriptional regulator [Source:ZFIN;Acc:ZDB-GENE-070705-170]
35. tmem204 ENSDARG00000045273 42 0.885 - - - - - - 0.885 - - transmembrane protein 204 [Source:ZFIN;Acc:ZDB-GENE-040724-12]
36. rab9a ENSDARG00000045027 201 0.882 - - - - - - 0.882 - - RAB9A, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-060825-293]
37. tmem110 497 0.88 - - - - - - 0.880 - - transmembrane protein 110
38. rorcb ENSDARG00000017780 233 0.878 - - - - - - 0.878 - - RAR-related orphan receptor C b [Source:ZFIN;Acc:ZDB-GENE-040724-215]
39. itih5 ENSDARG00000045517 374 0.878 - - - - - - 0.878 - - inter-alpha-trypsin inhibitor heavy chain family, member 5 [Source:ZFIN;Acc:ZDB-GENE-041210-193]
40. si:ch211-155e24.3 ENSDARG00000105127 972 0.875 - - - - - - 0.875 - - si:ch211-155e24.3 [Source:ZFIN;Acc:ZDB-GENE-070912-116]
41. tmem51a ENSDARG00000068575, ENSDARG00000114656 596 0.874 - - - - - - 0.874 - - transmembrane protein 51a [Source:ZFIN;Acc:ZDB-GENE-061103-481]
42. itpk1 itpk1 425 0.873 - - - - - - 0.873 - -
43. pcdh1a ENSDARG00000062720 276 0.873 - - - - - - 0.873 - - protocadherin 1a [Source:ZFIN;Acc:ZDB-GENE-091116-32]
44. polr3k ENSDARG00000037835 1552 0.869 - - - - - - 0.869 - - polymerase (RNA) III (DNA directed) polypeptide K [Source:ZFIN;Acc:ZDB-GENE-040718-291]
45. irf2a ENSDARG00000007387 915 0.867 - - - - - - 0.867 - - interferon regulatory factor 2a [Source:ZFIN;Acc:ZDB-GENE-030131-4135]
46. RPTOR ENSDARG00000098726, ENSDARG00000116019 420 0.865 - - - - - - 0.865 - - regulatory associated protein of MTOR, complex 1 [Source:ZFIN;Acc:ZDB-GENE-130530-685]
47. ccdc85cb ENSDARG00000079555 63 0.863 - - - - - - 0.863 - - coiled-coil domain containing 85C, b [Source:ZFIN;Acc:ZDB-GENE-040718-373]
48. CABZ01070045.1 CABZ01070045.1 1322 0.859 - - - - - - 0.859 - -
49. pmm2 ENSDARG00000037654 1783 0.859 - - - - - - 0.859 - - phosphomannomutase 2 [Source:ZFIN;Acc:ZDB-GENE-030722-6]
50. spint1b ENSDARG00000012467 97 0.858 - - - - - - 0.858 - - serine peptidase inhibitor, Kunitz type 1 b [Source:ZFIN;Acc:ZDB-GENE-071218-1]
51. SAYSD1 SAYSD1 149 0.856 - - - - - - 0.856 - -
52. mtm1 ENSDARG00000037560 1086 0.855 - - - - - - 0.855 - - myotubularin 1 [Source:ZFIN;Acc:ZDB-GENE-051113-128]
53. slc6a17 ENSDARG00000068787, ENSDARG00000109560 413 0.854 - - - - - - 0.854 - - solute carrier family 6 (neutral amino acid transporter), member 17 [Source:ZFIN;Acc:ZDB-GENE-030131-8187]
54. C13H10orf32 C13H10orf32 465 0.854 - - - - - - 0.854 - -
55. oser1 ENSDARG00000024669 676 0.853 - - - - - - 0.853 - - oxidative stress responsive serine-rich 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1325]
56. ryroxd1 227 0.851 - - - - - - 0.851 - - pyridine nucleotide-disulphide oxidoreductase domain 1, transcript variant X1
57. C3H16orf13 C3H16orf13 652 0.848 - - - - - - 0.848 - -
58. GPR31 431 0.847 - - - - - - 0.847 - - G protein-coupled receptor 31
59. riok1 ENSDARG00000016399 936 0.846 - - - - - - 0.846 - - RIO kinase 1 (yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-1927]
60. C5H9orf16 C5H9orf16 743 0.845 - - - - - - 0.845 - -
61. fbxo44 ENSDARG00000022623, ENSDARG00000114432 406 0.843 - - - - - - 0.843 - - F-box protein 44 [Source:ZFIN;Acc:ZDB-GENE-041212-85]
62. zgc:110540 ENSDARG00000054929 2154 0.843 - - - - - - 0.843 - - zgc:110540 [Source:ZFIN;Acc:ZDB-GENE-050327-77]
63. ARHGEF15 ENSDARG00000100293 553 0.842 - - - - - - 0.842 - - Rho guanine nucleotide exchange factor (GEF) 15 [Source:ZFIN;Acc:ZDB-GENE-060526-292]
64. lsm14ab ENSDARG00000100553 3837 0.84 0.840 - - - - - - - - LSM14A mRNA processing body assembly factor b [Source:ZFIN;Acc:ZDB-GENE-040426-2462]
65. ruvbl1 ENSDARG00000002591 2381 0.838 - - - - - - 0.838 - - RuvB-like AAA ATPase 1 [Source:ZFIN;Acc:ZDB-GENE-030109-2]
66. C21H17orf85 C21H17orf85 1167 0.837 - - - - - 0.837 - - -
67. rnf41 ENSDARG00000036831, ENSDARG00000111636 872 0.837 - - - - - - 0.837 - - ring finger protein 41 [Source:ZFIN;Acc:ZDB-GENE-040426-2920]
68. slc30a9 ENSDARG00000057272 766 0.837 - - - - - 0.837 - - - solute carrier family 30 (zinc transporter), member 9 [Source:ZFIN;Acc:ZDB-GENE-040724-254]
69. inhbb ENSDARG00000040777 2141 0.836 - - - - - - 0.836 - - inhibin subunit beta B [Source:ZFIN;Acc:ZDB-GENE-990415-2]
70. si:ch73-22o12.1 ENSDARG00000062831 251 0.836 - - - - - - 0.836 - - si:ch73-22o12.1 [Source:ZFIN;Acc:ZDB-GENE-110411-27]
71. btg3 ENSDARG00000069065, ENSDARG00000115730 1632 0.835 - - - - - - 0.835 - - B-cell translocation gene 3 [Source:ZFIN;Acc:ZDB-GENE-031113-19]
72. golga3 ENSDARG00000062511 588 0.834 - - - - - - 0.834 - - golgin A3 [Source:ZFIN;Acc:ZDB-GENE-060526-252]
73. psmd3 ENSDARG00000018124 540 0.834 - - - - - - 0.834 - - proteasome 26S subunit, non-ATPase 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1444]
74. CLDN23 CLDN23 2002 0.833 - - - - - - 0.833 - -
75. ajuba ENSDARG00000077842 1152 0.832 - - - - - - 0.832 - - ajuba LIM protein [Source:ZFIN;Acc:ZDB-GENE-030131-9341]
76. qrich1 ENSDARG00000019797, ENSDARG00000111720, ENSDARG00000113429 1177 0.831 - - - - - - 0.831 - - glutamine-rich 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8204]
77. ugt5b2 ENSDARG00000101495 512 0.83 - - - - - - 0.830 - - UDP glucuronosyltransferase 5 family, polypeptide B2 [Source:ZFIN;Acc:ZDB-GENE-100406-4]
78. rp2 ENSDARG00000044339 313 0.829 - - - - - - 0.829 - - RP2, ARL3 GTPase activating protein [Source:ZFIN;Acc:ZDB-GENE-040426-2795]
79. poc1bl ENSDARG00000012745 2451 0.828 - - - - - - 0.828 - - POC1 centriolar protein homolog B (Chlamydomonas), like [Source:ZFIN;Acc:ZDB-GENE-050306-41]
80. arhgap12a ENSDARG00000008548 757 0.828 - - - - - - 0.828 - - Rho GTPase activating protein 12a [Source:ZFIN;Acc:ZDB-GENE-050809-38]
81. stk16 ENSDARG00000037777 255 0.827 - - - - - - 0.827 - - serine/threonine kinase 16 [Source:ZFIN;Acc:ZDB-GENE-050417-102]
82. zgc:136439 ENSDARG00000009267 720 0.826 - - - - - - 0.826 - - zgc:136439 [Source:ZFIN;Acc:ZDB-GENE-060421-2858]
83. znf410 ENSDARG00000008218 1807 0.826 - - - - - - 0.826 - - zinc finger protein 410 [Source:ZFIN;Acc:ZDB-GENE-040426-1817]
84. ak5l ENSDARG00000017739 1058 0.825 - - - - - - 0.825 - - adenylate kinase 5, like [Source:ZFIN;Acc:ZDB-GENE-050410-2]
85. yaf2 ENSDARG00000015966 1905 0.824 - - - - - - 0.824 - - YY1 associated factor 2 [Source:ZFIN;Acc:ZDB-GENE-041210-115]
86. fgfr1op ENSDARG00000003058 449 0.823 - - - - - - 0.823 - - FGFR1 oncogene partner [Source:ZFIN;Acc:ZDB-GENE-090417-1]
87. crcp ENSDARG00000069373 730 0.823 - - - - - 0.823 - - - calcitonin gene-related peptide-receptor component protein [Source:ZFIN;Acc:ZDB-GENE-060825-150]
88. cln8 ENSDARG00000075525, ENSDARG00000113042 601 0.823 - - - - - 0.823 - - - CLN8, transmembrane ER and ERGIC protein [Source:ZFIN;Acc:ZDB-GENE-060906-3]
89. bnipl ENSDARG00000060435 1382 0.821 - - - - - - 0.821 - - BCL2 interacting protein like [Source:ZFIN;Acc:ZDB-GENE-060503-81]
90. tmem127 ENSDARG00000030981 1389 0.821 - - - - - - 0.821 - - transmembrane protein 127 [Source:ZFIN;Acc:ZDB-GENE-050522-97]
91. cx44.2 ENSDARG00000034207, ENSDARG00000113651 431 0.82 - - - - - - 0.820 - - connexin 44.2 [Source:ZFIN;Acc:ZDB-GENE-010619-1]
92. nsmaf ENSDARG00000051920 474 0.819 - - - - - - 0.819 - - neutral sphingomyelinase (N-SMase) activation associated factor [Source:ZFIN;Acc:ZDB-GENE-050417-342]
93. psmg3 ENSDARG00000098391 920 0.818 - - - - - - 0.818 - - proteasome (prosome, macropain) assembly chaperone 3 [Source:ZFIN;Acc:ZDB-GENE-040718-262]
94. nap1l1 ENSDARG00000101813 819 0.816 - - - - - 0.816 - - - nucleosome assembly protein 1-like 1 [Source:ZFIN;Acc:ZDB-GENE-030516-2]
95. aftpha ENSDARG00000069249 867 0.815 - - - - - - 0.815 - - aftiphilin a [Source:ZFIN;Acc:ZDB-GENE-030131-1437]
96. scamp3 ENSDARG00000016765 540 0.815 - - - - - - 0.815 - - secretory carrier membrane protein 3 [Source:ZFIN;Acc:ZDB-GENE-041114-33]
97. CR385081.1 CR385081.1 177 0.815 - - - - - - 0.815 - -
98. bag6l ENSDARG00000077531 1027 0.813 - - - - - - 0.813 - - BCL2 associated athanogene 6, like [Source:ZFIN;Acc:ZDB-GENE-060307-2]
99. si:ch211-218c6.8 ENSDARG00000092364 1270 0.812 - - - - - - 0.812 - - si:ch211-218c6.8 [Source:ZFIN;Acc:ZDB-GENE-050419-103]
100. ttll7 ENSDARG00000062973 519 0.812 0.812 - - - - - - - - tubulin tyrosine ligase-like family, member 7 [Source:ZFIN;Acc:ZDB-GENE-070112-2112]

There are 544 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA