Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for smarca5

Gene Name Gene ID Reads Annotation
smarca5 ENSDARG00000052348 15433 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 [Source:ZFIN;Acc:ZDB-GENE-021125-1]










Genes with expression patterns similar to smarca5

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. smarca5 ENSDARG00000052348 15433 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 [Source:ZFIN;Acc:ZDB-GENE-021125-1]
2. hmgb3a ENSDARG00000056725 15668 4.235 - 0.816 0.886 - - 0.876 0.761 - 0.896 high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
3. FP016176.1 FP016176.1 7030 4.007 - - - 0.748 - 0.836 0.792 0.841 0.790
4. CABZ01111990.1 CABZ01111990.1 4374 3.874 - 0.710 - 0.748 - 0.895 0.712 - 0.809
5. ewsr1a ENSDARG00000020258, ENSDARG00000113252 11221 3.39 0.908 - - 0.744 - - 0.832 - 0.906 EWS RNA-binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2317]
6. wu:fb17g07 wu:fb17g07 10567 3.191 - 0.794 - - - 0.801 - 0.868 0.728
7. khsrp ENSDARG00000026489 15738 3.186 - - 0.799 - - 0.770 0.764 - 0.853 KH-type splicing regulatory protein [Source:ZFIN;Acc:ZDB-GENE-030131-4357]
8. rbb4 rbb4 15541 3.178 - - 0.706 - - 0.764 0.783 - 0.925
9. puf60a ENSDARG00000032175 5618 3.154 - 0.704 - - - - 0.734 0.893 0.823 poly-U binding splicing factor a [Source:ZFIN;Acc:ZDB-GENE-030131-2891]
10. stmn1a ENSDARG00000004169 21169 3.103 - 0.737 0.788 - 0.823 - - - 0.755 stathmin 1a [Source:ZFIN;Acc:ZDB-GENE-031006-14]
11. AGO1 ENSDARG00000092644 4521 3.086 - 0.729 - - - 0.894 0.760 - 0.703 argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
12. prmt1 ENSDARG00000010246 11311 3.049 - 0.810 - - 0.795 0.705 0.739 - - protein arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-693]
13. smarca4 smarca4 9726 2.984 - - 0.738 - - 0.752 0.753 0.741 -
14. hnrpl 6412 2.655 0.936 - - - - 0.803 - - 0.916 heterogeneous nuclear ribonucleoprotein L, transcript variant X1
15. whsc1l1 8544 2.629 - - - - - 0.839 0.905 - 0.885 Wolf-Hirschhorn syndrome candidate 1-like 1, transcript variant X2
16. lfng ENSDARG00000037879 11783 2.611 - - - - - 0.895 - 0.829 0.887 LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:ZFIN;Acc:ZDB-GENE-980605-16]
17. sfpq ENSDARG00000011564, ENSDARG00000115611 15626 2.603 0.916 - - - - - 0.789 - 0.898 splicing factor proline/glutamine-rich [Source:ZFIN;Acc:ZDB-GENE-040426-2452]
18. dpysl3 ENSDARG00000002587 4381 2.564 - - - - - 0.845 - 0.853 0.866 dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
19. nova2 ENSDARG00000017673 7685 2.552 - - - - - 0.865 - 0.835 0.852 neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
20. creb1a ENSDARG00000053586 5068 2.519 - - - - - 0.756 - 0.884 0.879 cAMP responsive element binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-040426-750]
21. r3hdm1 ENSDARG00000101458 5241 2.511 - - - - - - 0.866 0.824 0.821 R3H domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7119]
22. neo1 neo1 4056 2.497 0.847 0.770 - - - - - 0.880 -
23. ier5 ENSDARG00000009881, ENSDARG00000111680 11432 2.491 0.906 - - - - 0.796 0.789 - - immediate early response 5 [Source:ZFIN;Acc:ZDB-GENE-030616-127]
24. srsf11 ENSDARG00000098574 12801 2.486 0.959 - - - - - 0.741 - 0.786 serine/arginine-rich splicing factor 11 [Source:ZFIN;Acc:ZDB-GENE-030131-605]
25. syt11b ENSDARG00000056105 578 2.477 - - - - - 0.850 0.838 - 0.789 synaptotagmin XIb [Source:ZFIN;Acc:ZDB-GENE-090601-7]
26. arnt2 ENSDARG00000103697 5731 2.467 - - - - - 0.913 0.705 - 0.849 aryl-hydrocarbon receptor nuclear translocator 2 [Source:ZFIN;Acc:ZDB-GENE-001207-3]
27. ube2i ube2i 13024 2.462 0.862 - - - 0.820 - 0.780 - -
28. lbr ENSDARG00000014013 4835 2.46 - - - - - - 0.709 0.884 0.867 lamin B receptor [Source:ZFIN;Acc:ZDB-GENE-030804-11]
29. sin3b ENSDARG00000062472 2025 2.453 - - - - - 0.788 0.850 - 0.815 SIN3 transcription regulator family member B [Source:ZFIN;Acc:ZDB-GENE-030131-8264]
30. rtca ENSDARG00000002215 3558 2.45 - - - - - 0.778 0.825 - 0.847 RNA 3'-terminal phosphate cyclase [Source:ZFIN;Acc:ZDB-GENE-030131-9687]
31. ckbb ENSDARG00000043257 3503 2.44 - - - - - 0.794 0.811 0.835 - creatine kinase, brain b [Source:ZFIN;Acc:ZDB-GENE-020103-2]
32. wu:fq41a10 wu:fq41a10 7009 2.436 0.921 0.799 - - - - 0.716 - -
33. SNRPG ENSDARG00000099667 18697 2.43 - 0.797 - - - - 0.799 - 0.834 small nuclear ribonucleoprotein polypeptide G [Source:ZFIN;Acc:ZDB-GENE-040912-105]
34. pcdh19 ENSDARG00000034344 2378 2.424 - - 0.702 - - 0.862 - - 0.860 protocadherin 19 [Source:ZFIN;Acc:ZDB-GENE-030131-4218]
35. pou3f3a ENSDARG00000042032 2835 2.41 - - - - - 0.928 0.709 - 0.773 POU class 3 homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-980526-220]
36. smc1al ENSDARG00000058203 8838 2.405 - - - - - 0.760 0.792 - 0.853 structural maintenance of chromosomes 1A, like [Source:ZFIN;Acc:ZDB-GENE-040426-57]
37. h2afva ENSDARG00000068820 16427 2.403 - - - - - 0.831 0.830 - 0.742 H2A histone family, member Va [Source:ZFIN;Acc:ZDB-GENE-020717-1]
38. kansl2 ENSDARG00000056318, ENSDARG00000113311 4702 2.395 0.898 - - - - 0.732 - - 0.765 KAT8 regulatory NSL complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-041010-67]
39. smg7 ENSDARG00000060767 2759 2.391 - - - - - - 0.814 0.842 0.735 SMG7 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-030131-9122]
40. rrm1 ENSDARG00000014017 7296 2.391 - 0.709 - - - - 0.818 - 0.864 ribonucleotide reductase M1 polypeptide [Source:ZFIN;Acc:ZDB-GENE-990415-247]
41. tmpob ENSDARG00000022978 8121 2.383 - - - - - 0.708 0.774 - 0.901 thymopoietin b [Source:ZFIN;Acc:ZDB-GENE-050522-8]
42. metrn ENSDARG00000030367, ENSDARG00000112407, ENSDARG00000115842 7032 2.383 - - - - - 0.851 0.733 0.799 - meteorin, glial cell differentiation regulator [Source:ZFIN;Acc:ZDB-GENE-050102-1]
43. scaf4a ENSDARG00000077093 2408 2.381 - 0.730 - - - - 0.755 0.896 - SR-related CTD-associated factor 4a [Source:ZFIN;Acc:ZDB-GENE-030131-9003]
44. camlg ENSDARG00000100409 2157 2.377 0.872 0.757 - - - - - - 0.748 calcium modulating ligand [Source:ZFIN;Acc:ZDB-GENE-040426-2407]
45. pl10 pl10 10795 2.371 - 0.791 - - - 0.764 0.816 - -
46. kif11 ENSDARG00000010948 4973 2.361 - - - - 0.832 0.704 - - 0.825 kinesin family member 11 [Source:ZFIN;Acc:ZDB-GENE-020426-1]
47. luc7l3 ENSDARG00000014366 4416 2.356 - - - 0.750 - - 0.812 - 0.794 LUC7-like 3 pre-mRNA splicing factor [Source:ZFIN;Acc:ZDB-GENE-060616-375]
48. fam60al 2846 2.355 - - - - - 0.738 0.820 - 0.797 family with sequence similarity 60, member A, like
49. carm1 ENSDARG00000018698 5599 2.355 - - - - - 0.762 0.743 - 0.850 coactivator-associated arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040724-77]
50. sf3a1 ENSDARG00000041887 6702 2.354 - - - 0.749 - - 0.802 - 0.803 splicing factor 3a, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030616-156]
51. hnrnpub ENSDARG00000004735 16496 2.346 - - - - - 0.723 0.704 - 0.919 heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
52. TNKS TNKS 2775 2.341 - 0.724 - - - - 0.820 - 0.797
53. tgif1 ENSDARG00000059337 4020 2.34 - - - - 0.712 - 0.813 - 0.815 TGFB-induced factor homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-030131-475]
54. sh2d3ca ENSDARG00000028099 1037 2.335 - - - - - 0.706 0.851 - 0.778 SH2 domain containing 3Ca [Source:ZFIN;Acc:ZDB-GENE-080102-1]
55. rab11fip4a ENSDARG00000090170 839 2.331 - - - - - 0.735 0.847 - 0.749 RAB11 family interacting protein 4 (class II) a [Source:ZFIN;Acc:ZDB-GENE-040718-266]
56. mbd3b ENSDARG00000042029, ENSDARG00000061810 4561 2.328 - - - - - 0.735 0.706 - 0.887 methyl-CpG binding domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9792]
57. gap43 ENSDARG00000099744 4114 2.326 - 0.744 - - - 0.750 - - 0.832 growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
58. smarcd1 ENSDARG00000019004 6028 2.324 - - - - - 0.736 0.793 - 0.795 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1835]
59. hmgb1b ENSDARG00000030479 10398 2.321 - - 0.719 - - 0.789 0.813 - - high mobility group box 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8480]
60. ncl ENSDARG00000002710 16951 2.315 0.744 0.760 - - - - - - 0.811 nucleolin [Source:ZFIN;Acc:ZDB-GENE-030131-6986]
61. tfdp2 ENSDARG00000042835 1985 2.312 - 0.799 - - - 0.722 - - 0.791 transcription factor Dp-2 [Source:ZFIN;Acc:ZDB-GENE-030219-104]
62. srsf4 ENSDARG00000105293 9657 2.31 - - - - - 0.824 0.763 0.723 - serine/arginine-rich splicing factor 4 [Source:ZFIN;Acc:ZDB-GENE-030131-591]
63. mcm5 ENSDARG00000019507 6407 2.309 - 0.749 0.735 - - - - - 0.825 minichromosome maintenance complex component 5 [Source:ZFIN;Acc:ZDB-GENE-021209-1]
64. pola2 ENSDARG00000015070 2286 2.305 - - - 0.751 - - 0.816 - 0.738 polymerase (DNA directed), alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-778]
65. nkain1 ENSDARG00000006859 1961 2.299 - - - - 0.719 0.791 - - 0.789 sodium/potassium transporting ATPase interacting 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1472]
66. bahcc1 bahcc1 1934 2.299 - - - - - 0.716 0.746 0.837 -
67. ddx39ab ENSDARG00000015111 11619 2.293 - - - - - 0.773 0.715 - 0.805 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab [Source:ZFIN;Acc:ZDB-GENE-040426-2902]
68. rqcd1 2301 2.292 - - - - 0.709 0.834 0.749 - - RCD1 required for cell differentiation1 homolog (S. pombe)
69. srsf3a ENSDARG00000025397, ENSDARG00000100815 11622 2.287 - - - 0.743 - 0.712 0.832 - - serine/arginine-rich splicing factor 3a [Source:ZFIN;Acc:ZDB-GENE-030616-631]
70. AP3B2 1874 2.284 - - - - - 0.723 0.771 - 0.790 adaptor related protein complex 3 beta 2 subunit, transcript variant X2
71. snrpd3l ENSDARG00000076283 7655 2.279 - - - - - 0.700 0.735 - 0.844 small nuclear ribonucleoprotein D3 polypeptide, like [Source:ZFIN;Acc:ZDB-GENE-030131-5219]
72. cdk2 ENSDARG00000026577 2835 2.27 - 0.716 - - - - 0.739 - 0.815 cyclin-dependent kinase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2741]
73. ppm1g ENSDARG00000075559 6516 2.264 - - 0.800 - - 0.707 - - 0.757 protein phosphatase, Mg2+/Mn2+ dependent, 1G [Source:ZFIN;Acc:ZDB-GENE-030425-4]
74. ewsr1b ENSDARG00000020465, ENSDARG00000117011 10260 2.262 - - - - 0.784 0.702 - - 0.776 EWS RNA-binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-030131-1600]
75. cx43.4 ENSDARG00000007099 16369 2.26 - 0.762 0.714 - - 0.784 - - - connexin 43.4 [Source:ZFIN;Acc:ZDB-GENE-990415-38]
76. kif22 ENSDARG00000102624 3694 2.254 - - - - - 0.703 0.708 - 0.843 kinesin family member 22 [Source:ZFIN;Acc:ZDB-GENE-080204-34]
77. kmt2cb ENSDARG00000075560 4816 2.251 - 0.721 - - - - 0.826 - 0.704 lysine (K)-specific methyltransferase 2Cb [Source:ZFIN;Acc:ZDB-GENE-070705-340]
78. cks1b ENSDARG00000007971 2739 2.246 - - - - 0.716 - 0.773 - 0.757 CDC28 protein kinase regulatory subunit 1B [Source:ZFIN;Acc:ZDB-GENE-040801-112]
79. dhx15 ENSDARG00000015392 7496 2.244 - - 0.760 - - - - 0.781 0.703 DEAH (Asp-Glu-Ala-His) box helicase 15 [Source:ZFIN;Acc:ZDB-GENE-030131-650]
80. brd3b ENSDARG00000100129 6387 2.243 - - - - - 0.764 0.776 - 0.703 bromodomain containing 3b [Source:ZFIN;Acc:ZDB-GENE-030131-5316]
81. Sep-06 Sep-06 5465 2.24 - 0.780 - - - - 0.736 - 0.724
82. si:ch73-46j18.5 ENSDARG00000092467 6002 2.235 - 0.718 - - - - 0.815 - 0.702 si:ch73-46j18.5 [Source:ZFIN;Acc:ZDB-GENE-030131-7892]
83. pcna ENSDARG00000054155 89521 2.232 0.769 - - - - 0.748 - - 0.715 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
84. prps1b ENSDARG00000037506, ENSDARG00000110507 4170 2.23 - - - - 0.716 - 0.756 - 0.758 phosphoribosyl pyrophosphate synthetase 1B [Source:ZFIN;Acc:ZDB-GENE-030131-4011]
85. atp6v0cb ENSDARG00000036577 3472 2.225 - - - - - 0.808 0.713 - 0.704 ATPase H+ transporting V0 subunit cb [Source:ZFIN;Acc:ZDB-GENE-030131-4127]
86. hoxb8b ENSDARG00000054025, ENSDARG00000111056 2106 2.223 - - - - - 0.738 0.705 0.780 - homeobox B8b [Source:ZFIN;Acc:ZDB-GENE-980526-291]
87. CWC15 ENSDARG00000013382 8969 2.206 - 0.758 - 0.739 - 0.709 - - - CWC15 spliceosome-associated protein homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040625-10]
88. snrnp70 ENSDARG00000077126 5921 2.2 - 0.731 - - 0.710 - - - 0.759 small nuclear ribonucleoprotein 70 (U1) [Source:ZFIN;Acc:ZDB-GENE-040825-2]
89. ncalda ENSDARG00000070688 5069 2.186 - 0.729 - - - - 0.754 - 0.703 neurocalcin delta a [Source:ZFIN;Acc:ZDB-GENE-080220-28]
90. ctnnbip1 ENSDARG00000038954 2519 2.184 - - - - 0.718 0.712 - - 0.754 catenin, beta interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-000906-3]
91. zgc:153675 ENSDARG00000071555 3769 2.177 0.703 0.709 - - - - - 0.765 - zgc:153675 [Source:ZFIN;Acc:ZDB-GENE-061013-567]
92. appb ENSDARG00000055543, ENSDARG00000109552 4461 2.176 - 0.702 - - 0.703 - 0.771 - - amyloid beta (A4) precursor protein b [Source:ZFIN;Acc:ZDB-GENE-020220-1]
93. ccnt1 ENSDARG00000017525 1888 2.167 - 0.728 - - - - 0.715 - 0.724 cyclin T1 [Source:ZFIN;Acc:ZDB-GENE-030131-6397]
94. bmi1b ENSDARG00000013076 1020 2.155 - 0.734 - - - - 0.700 - 0.721 bmi1 polycomb ring finger oncogene 1b [Source:ZFIN;Acc:ZDB-GENE-040116-4]
95. wu:fc51f04 wu:fc51f04 7074 1.856 0.949 - - - - - - - 0.907
96. pou3f1 ENSDARG00000009823, ENSDARG00000112302 7037 1.834 - - - - - 0.902 - - 0.932 POU class 3 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-372]
97. tmem35 ENSDARG00000052567 5685 1.827 - - - - - 0.932 - - 0.895 transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
98. HNRNPAB HNRNPAB 22267 1.789 - - - - - - 0.840 - 0.949
99. mcm2 ENSDARG00000102798 8148 1.772 0.924 - - - - - - - 0.848 minichromosome maintenance complex component 2 [Source:ZFIN;Acc:ZDB-GENE-020419-24]
100. hmgb2b ENSDARG00000053990 11519 1.756 - - - - - - 0.861 - 0.895 high mobility group box 2b [Source:ZFIN;Acc:ZDB-GENE-040912-122]

There are 2327 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA