Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for skp2

Gene Name Gene ID Reads Annotation
skp2 ENSDARG00000004937, ENSDARG00000114929 1584 S-phase kinase-associated protein 2, E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-030219-158]










Genes with expression patterns similar to skp2

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. skp2 ENSDARG00000004937, ENSDARG00000114929 1584 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 S-phase kinase-associated protein 2, E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-030219-158]
2. ELOVL4 ELOVL4 3026 3.234 0.776 0.731 0.984 - - - - - 0.743
3. nhlh2 ENSDARG00000025495 1860 3.221 - 0.793 0.968 - - - 0.718 - 0.742 nescient helix loop helix 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1809]
4. her4.2_1 ENSDARG00000056729, ENSDARG00000094426 2383 3.088 - 0.712 - - - - 0.725 0.895 0.756 hairy-related 4, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060815-1]
5. gpm6aa ENSDARG00000055455, ENSDARG00000110942 9156 3.067 - 0.726 - - - - 0.724 0.900 0.717 glycoprotein M6Aa [Source:ZFIN;Acc:ZDB-GENE-030710-7]
6. tmpob ENSDARG00000022978 8121 2.929 0.703 - - 0.741 - - 0.726 - 0.759 thymopoietin b [Source:ZFIN;Acc:ZDB-GENE-050522-8]
7. GATAD2B ENSDARG00000005834 3855 2.607 - - 0.911 - - - - 0.932 0.764 GATA zinc finger domain containing 2B [Source:ZFIN;Acc:ZDB-GENE-060503-655]
8. hmgb3a ENSDARG00000056725 15668 2.407 0.764 - - - - - - 0.908 0.735 high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
9. gfap ENSDARG00000025301 5584 2.391 0.712 - 0.974 - - - 0.705 - - glial fibrillary acidic protein [Source:ZFIN;Acc:ZDB-GENE-990914-3]
10. sox19b ENSDARG00000040266 532 2.373 - 0.746 - - - - 0.713 0.914 - SRY (sex determining region Y)-box 19b [Source:ZFIN;Acc:ZDB-GENE-010111-1]
11. fzd3a ENSDARG00000021664 1958 2.367 - - - 0.734 - - - 0.882 0.751 frizzled class receptor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-225]
12. marcksl1b ENSDARG00000035715 37390 2.364 0.843 - - 0.755 - - - 0.766 - MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
13. onecut1 ENSDARG00000007982, ENSDARG00000112251 6307 2.277 - 0.707 0.850 - - - 0.720 - - one cut homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1469]
14. setbp1 ENSDARG00000093799 4499 2.265 - - - 0.701 - - - 0.857 0.707 SET binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-060526-72]
15. pou3f1 ENSDARG00000009823, ENSDARG00000112302 7037 2.262 0.775 - - 0.709 - - - - 0.778 POU class 3 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-372]
16. mllt11 ENSDARG00000071026 2518 2.256 0.791 - - - - - 0.747 - 0.718 MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
17. plp1a ENSDARG00000103732 3544 2.249 0.746 - - 0.763 - - 0.740 - - proteolipid protein 1a [Source:ZFIN;Acc:ZDB-GENE-001202-1]
18. mcm6 ENSDARG00000057683, ENSDARG00000113317 6591 2.244 - 0.716 - 0.788 - - - - 0.740 minichromosome maintenance complex component 6 [Source:ZFIN;Acc:ZDB-GENE-030909-6]
19. Sep-03 Sep-03 1124 2.243 - - - - - - 0.732 0.792 0.719
20. gap43 ENSDARG00000099744 4114 2.237 0.773 0.702 - - - - - - 0.762 growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
21. dnajc5aa ENSDARG00000042948 2885 2.227 - - - - - - 0.720 0.791 0.716 DnaJ (Hsp40) homolog, subfamily C, member 5aa [Source:ZFIN;Acc:ZDB-GENE-031113-20]
22. tuba1c ENSDARG00000055216 8384 2.226 0.753 - - - - - 0.707 - 0.766 tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
23. rrm1 ENSDARG00000014017 7296 2.222 - - - 0.767 - - - 0.741 0.714 ribonucleotide reductase M1 polypeptide [Source:ZFIN;Acc:ZDB-GENE-990415-247]
24. her13 ENSDARG00000007097 2000 2.214 0.716 0.758 - - - - 0.740 - - hairy-related 13 [Source:ZFIN;Acc:ZDB-GENE-050228-1]
25. tmem35 ENSDARG00000052567 5685 2.211 0.715 - - - - - 0.727 - 0.769 transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
26. lrrn1 ENSDARG00000060115, ENSDARG00000115960 5175 2.198 0.727 - - - - - 0.712 - 0.759 leucine rich repeat neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-071126-1]
27. CABZ01028287.1 CABZ01028287.1 626 2.189 0.717 - - - - - 0.719 - 0.753
28. nes ENSDARG00000088805 2710 2.166 0.736 0.708 - - - - 0.722 - - nestin [Source:ZFIN;Acc:ZDB-GENE-071119-2]
29. cdh2 ENSDARG00000018693, ENSDARG00000117201 9869 2.122 0.707 - - 0.707 0.708 - - - - cadherin 2, type 1, N-cadherin (neuronal) [Source:ZFIN;Acc:ZDB-GENE-990415-171]
30. dennd5a ENSDARG00000017006 3426 1.942 - - 0.979 - - - - 0.963 - DENN/MADD domain containing 5A [Source:ZFIN;Acc:ZDB-GENE-071211-1]
31. emc3 ENSDARG00000020607 3406 1.911 - - 0.964 - - - - 0.947 - ER membrane protein complex subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2904]
32. ncalda ENSDARG00000070688 5069 1.907 - - 0.947 - - - - 0.960 - neurocalcin delta a [Source:ZFIN;Acc:ZDB-GENE-080220-28]
33. pinx1 ENSDARG00000023532 4452 1.888 - - 0.930 - - - - 0.958 - PIN2 (TERF1) interacting telomerase inhibitor 1 [Source:ZFIN;Acc:ZDB-GENE-030515-2]
34. nme3 ENSDARG00000100990 3889 1.879 - - 0.964 - - - - 0.915 - NME/NM23 nucleoside diphosphate kinase 3 [Source:ZFIN;Acc:ZDB-GENE-000210-34]
35. creb3l3l ENSDARG00000020926, ENSDARG00000116217 1458 1.856 - - 0.962 - - - - 0.894 - cAMP responsive element binding protein 3-like 3 like [Source:ZFIN;Acc:ZDB-GENE-040426-2942]
36. tcf3b ENSDARG00000099999, ENSDARG00000112646 3589 1.829 - - 0.973 - - - - 0.856 - transcription factor 3b [Source:ZFIN;Acc:ZDB-GENE-051113-64]
37. thrap3b ENSDARG00000098228 4396 1.821 - - 0.896 - - - - 0.925 - thyroid hormone receptor associated protein 3b [Source:ZFIN;Acc:ZDB-GENE-040516-9]
38. arih2 ENSDARG00000012848 7087 1.821 - - 0.867 - - - - 0.954 - ariadne homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-2158]
39. zbtb18 ENSDARG00000028228 3653 1.793 - - 0.984 - - - - - 0.809 zinc finger and BTB domain containing 18 [Source:ZFIN;Acc:ZDB-GENE-050419-73]
40. ppifb ENSDARG00000052842 3533 1.785 - - 0.922 - - - - 0.863 - peptidylprolyl isomerase Fb [Source:ZFIN;Acc:ZDB-GENE-051030-126]
41. nae1 ENSDARG00000011301, ENSDARG00000111542 1505 1.775 - 0.816 - - - - - 0.959 - nedd8 activating enzyme E1 subunit 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1552]
42. pou3f2a ENSDARG00000070220 817 1.765 - - 0.979 - - - - - 0.786 POU class 3 homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-980526-139]
43. pgam5 ENSDARG00000035608 4044 1.751 0.835 - - - - - - 0.916 - PGAM family member 5, serine/threonine protein phosphatase, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-030131-683]
44. scmh1 ENSDARG00000104311, ENSDARG00000110119 413 1.738 0.783 - - - - - - 0.955 - Scm polycomb group protein homolog 1 [Source:ZFIN;Acc:ZDB-GENE-070410-82]
45. syt11a ENSDARG00000057913 1145 1.733 - - 0.976 - - - 0.757 - - synaptotagmin XIa [Source:ZFIN;Acc:ZDB-GENE-040426-2815]
46. nadl1.1 1200 1.723 - - - - - - 0.761 0.962 - neural adhesion molecule L1.1, transcript variant X1
47. TTC28 ENSDARG00000114920 580 1.719 0.757 - - - - - - 0.962 - tetratricopeptide repeat domain 28 [Source:HGNC Symbol;Acc:HGNC:29179]
48. LDLRAD4 LDLRAD4 1237 1.719 - - - - - - - 0.963 0.756
49. mapk12b ENSDARG00000006409 2246 1.714 0.780 - 0.934 - - - - - - mitogen-activated protein kinase 12b [Source:ZFIN;Acc:ZDB-GENE-041210-123]
50. eftud2 ENSDARG00000012261 3081 1.711 - - 0.966 - - - - - 0.745 elongation factor Tu GTP binding domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1569]
51. vamp2 ENSDARG00000056877 2158 1.709 - - - - - - - 0.948 0.761 vesicle-associated membrane protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8225]
52. map7d2b ENSDARG00000045316 702 1.708 - - - - - - 0.745 0.963 - MAP7 domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-091118-82]
53. znf319 znf319 3027 1.707 0.790 - - - - - - 0.917 -
54. coe2 coe2 1633 1.707 - - 0.973 - - - - - 0.734
55. pold3 ENSDARG00000076169 694 1.699 - - - - - - 0.737 0.962 - polymerase (DNA-directed), delta 3, accessory subunit [Source:ZFIN;Acc:ZDB-GENE-060512-59]
56. zgc:162193 ENSDARG00000098171, ENSDARG00000116836 1773 1.698 - - 0.973 - - - - 0.725 - zgc:162193 [Source:ZFIN;Acc:ZDB-GENE-030131-2035]
57. top2a ENSDARG00000024488 4273 1.693 - - - - - - - 0.951 0.742 DNA topoisomerase II alpha [Source:ZFIN;Acc:ZDB-GENE-030131-2453]
58. nin ENSDARG00000060298 1558 1.693 - - 0.984 - - - - - 0.709 ninein (GSK3B interacting protein) [Source:ZFIN;Acc:ZDB-GENE-070725-1]
59. syn1 ENSDARG00000060368, ENSDARG00000111164 397 1.689 - - 0.973 - - - 0.716 - - synapsin I [Source:ZFIN;Acc:ZDB-GENE-081105-93]
60. dlb ENSDARG00000004232 5120 1.689 - - 0.936 - - - - - 0.753 deltaB [Source:ZFIN;Acc:ZDB-GENE-980526-114]
61. ercc2 ENSDARG00000021985 678 1.686 - - 0.977 - - - 0.709 - - excision repair cross-complementation group 2 [Source:ZFIN;Acc:ZDB-GENE-040426-997]
62. efnb3b ENSDARG00000042277 5823 1.685 - - 0.962 - - - 0.723 - - ephrin-B3b [Source:ZFIN;Acc:ZDB-GENE-010618-3]
63. zc3h13 ENSDARG00000037177, ENSDARG00000113331 2662 1.684 0.721 - 0.963 - - - - - - zinc finger CCCH-type containing 13 [Source:ZFIN;Acc:ZDB-GENE-040426-1619]
64. prdx3 ENSDARG00000032102, ENSDARG00000114240 10034 1.683 - - 0.886 - - - - 0.797 - peroxiredoxin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-18]
65. tyr ENSDARG00000039077 568 1.682 0.709 - 0.973 - - - - - - tyrosinase [Source:ZFIN;Acc:ZDB-GENE-991026-3]
66. polr2j ENSDARG00000035146 1493 1.68 - - 0.979 - - - 0.701 - - polymerase (RNA) II (DNA directed) polypeptide J [Source:ZFIN;Acc:ZDB-GENE-050522-120]
67. hnrnpul1 ENSDARG00000040564 6550 1.68 - - 0.975 - - - - - 0.705 heterogeneous nuclear ribonucleoprotein U-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2432]
68. CCDC88C ENSDARG00000053713 1026 1.679 - 0.702 0.977 - - - - - - coiled-coil domain containing 88C [Source:ZFIN;Acc:ZDB-GENE-100419-3]
69. cplx2l ENSDARG00000018997 3975 1.678 0.706 - 0.972 - - - - - - complexin 2, like [Source:ZFIN;Acc:ZDB-GENE-040718-160]
70. ebf3 ebf3 4238 1.677 0.726 - - - - - - 0.951 -
71. CDCA4 ENSDARG00000042319 7918 1.674 - - - 0.768 - - - 0.906 - cell division cycle associated 4 [Source:ZFIN;Acc:ZDB-GENE-030131-1695]
72. prps1b ENSDARG00000037506, ENSDARG00000110507 4170 1.674 - - - - - - - 0.939 0.735 phosphoribosyl pyrophosphate synthetase 1B [Source:ZFIN;Acc:ZDB-GENE-030131-4011]
73. bri3bp ENSDARG00000010108 6295 1.674 - - 0.910 - - - - 0.764 - bri3 binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-5254]
74. bsk146 ENSDARG00000099069 274 1.673 - - - - - - 0.706 0.967 - brain specific kinase 146 [Source:ZFIN;Acc:ZDB-GENE-060313-3]
75. c1d ENSDARG00000021112 2839 1.673 - - - - - - - 0.936 0.737 C1D nuclear receptor corepressor [Source:ZFIN;Acc:ZDB-GENE-041024-8]
76. gpd1l ENSDARG00000040024 2182 1.672 - 0.729 0.943 - - - - - - glycerol-3-phosphate dehydrogenase 1 like [Source:ZFIN;Acc:ZDB-GENE-041010-220]
77. tubb5 ENSDARG00000037997 18691 1.67 0.739 - - - - - - 0.931 - tubulin, beta 5 [Source:ZFIN;Acc:ZDB-GENE-031110-4]
78. sox21a ENSDARG00000031664, ENSDARG00000111842 1700 1.668 0.708 - 0.960 - - - - - - SRY (sex determining region Y)-box 21a [Source:ZFIN;Acc:ZDB-GENE-990715-6]
79. RSF1 RSF1 1242 1.667 - - 0.964 - - - - - 0.703
80. ctnnbip1 ENSDARG00000038954 2519 1.662 - - - - - - 0.791 0.871 - catenin, beta interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-000906-3]
81. snrpb ENSDARG00000011125 11729 1.661 - - - 0.724 - - - 0.937 - small nuclear ribonucleoprotein polypeptides B and B1 [Source:ZFIN;Acc:ZDB-GENE-040426-1819]
82. dnaja2l ENSDARG00000010745 2367 1.66 - - - - - - - 0.856 0.804 DnaJ (Hsp40) homolog, subfamily A, member 2, like [Source:ZFIN;Acc:ZDB-GENE-030131-2884]
83. dr1 ENSDARG00000105098, ENSDARG00000113528 5263 1.653 - - - - - - - 0.936 0.717 down-regulator of transcription 1 [Source:ZFIN;Acc:ZDB-GENE-061013-797]
84. ppm1g ENSDARG00000075559 6516 1.646 - - 0.771 - - - - 0.875 - protein phosphatase, Mg2+/Mn2+ dependent, 1G [Source:ZFIN;Acc:ZDB-GENE-030425-4]
85. ube2g1a ENSDARG00000015292, ENSDARG00000112281 3207 1.644 - - 0.900 - - - - - 0.744 ubiquitin-conjugating enzyme E2G 1a (UBC7 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-6065]
86. lpl ENSDARG00000087697 2578 1.641 - 0.708 - - - - - 0.933 - lipoprotein lipase [Source:ZFIN;Acc:ZDB-GENE-990415-139]
87. MKI67 ENSDARG00000091150 11038 1.638 - - - 0.780 - - - 0.858 - marker of proliferation Ki-67 [Source:ZFIN;Acc:ZDB-GENE-030131-9771]
88. ap1s2 ENSDARG00000058504, ENSDARG00000114515 6499 1.636 0.763 - 0.873 - - - - - - adaptor related protein complex 1 subunit sigma 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5448]
89. max ENSDARG00000024844 6035 1.629 - - - - - - - 0.897 0.732 myc associated factor X [Source:ZFIN;Acc:ZDB-GENE-990415-152]
90. farsa ENSDARG00000098825 2813 1.626 - 0.717 - - - - - 0.909 - phenylalanyl-tRNA synthetase subunit alpha [Source:ZFIN;Acc:ZDB-GENE-050512-2]
91. pes ENSDARG00000018902 3286 1.622 - 0.725 0.897 - - - - - - pescadillo [Source:ZFIN;Acc:ZDB-GENE-990415-206]
92. cldn5a ENSDARG00000043716 3865 1.617 0.726 - 0.891 - - - - - - claudin 5a [Source:ZFIN;Acc:ZDB-GENE-040426-2442]
93. kif22 ENSDARG00000102624 3694 1.615 - - - - - - - 0.881 0.734 kinesin family member 22 [Source:ZFIN;Acc:ZDB-GENE-080204-34]
94. ssrp1a ENSDARG00000037397, ENSDARG00000116441 3999 1.605 - - - - - - - 0.878 0.727 structure specific recognition protein 1a [Source:ZFIN;Acc:ZDB-GENE-031118-9]
95. hnrnpub ENSDARG00000004735 16496 1.604 - - - 0.795 - - - - 0.809 heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
96. efnb2a ENSDARG00000020164 5262 1.598 - - 0.857 0.741 - - - - - ephrin-B2a [Source:ZFIN;Acc:ZDB-GENE-990415-67]
97. nbeaa ENSDARG00000070080 862 1.596 0.826 - - - - - - - 0.770 neurobeachin a [Source:ZFIN;Acc:ZDB-GENE-050320-68]
98. baz1b ENSDARG00000102832, ENSDARG00000114866 3543 1.589 - - 0.866 - - - - - 0.723 bromodomain adjacent to zinc finger domain, 1B [Source:ZFIN;Acc:ZDB-GENE-010328-16]
99. puf60a ENSDARG00000032175 5618 1.589 - - - 0.843 - - - - 0.746 poly-U binding splicing factor a [Source:ZFIN;Acc:ZDB-GENE-030131-2891]
100. dync1i1 ENSDARG00000060948 554 1.58 - - - - - - 0.775 - 0.805 dynein, cytoplasmic 1, intermediate chain 1 [Source:ZFIN;Acc:ZDB-GENE-061215-62]

There are 1499 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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