Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for skp1

Gene Name Gene ID Reads Annotation
skp1 ENSDARG00000003151 8172 S-phase kinase-associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1707]










Genes with expression patterns similar to skp1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. skp1 ENSDARG00000003151 8172 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 S-phase kinase-associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1707]
2. acsl3b ENSDARG00000014674 3748 2.483 - 0.993 - - - 0.754 - - 0.736 acyl-CoA synthetase long chain family member 3b [Source:ZFIN;Acc:ZDB-GENE-030131-492]
3. kif11 ENSDARG00000010948 4973 2.482 - - - - - 0.773 0.951 - 0.758 kinesin family member 11 [Source:ZFIN;Acc:ZDB-GENE-020426-1]
4. si:ch211-198j3.1 si:ch211-198j3.1 5487 2.424 - - - - - 0.734 0.942 0.748 -
5. EIF4G1 EIF4G1 19676 2.393 - 0.737 - - - 0.746 0.910 - -
6. arid1aa ENSDARG00000101710 3644 2.392 - - - - - 0.740 0.930 - 0.722 AT rich interactive domain 1Aa (SWI-like) [Source:ZFIN;Acc:ZDB-GENE-080220-35]
7. tma7 ENSDARG00000071670 13372 2.323 - - - 0.787 - 0.781 - - 0.755 translation machinery associated 7 homolog [Source:ZFIN;Acc:ZDB-GENE-061027-176]
8. emc2 ENSDARG00000003308, ENSDARG00000114541 7141 2.297 - - - 0.733 - 0.741 - - 0.823 ER membrane protein complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-040625-82]
9. MAP4K4 ENSDARG00000098670 4665 2.276 - - - - - 0.713 0.863 - 0.700 mitogen-activated protein kinase kinase kinase kinase 4 [Source:ZFIN;Acc:ZDB-GENE-030131-6722]
10. wdr5 ENSDARG00000016903 4834 2.257 - - 0.785 0.718 - - 0.754 - - WD repeat domain 5 [Source:ZFIN;Acc:ZDB-GENE-040426-2082]
11. psmc5 ENSDARG00000015315 8458 2.216 0.726 - 0.727 - - 0.763 - - - proteasome 26S subunit, ATPase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-6547]
12. akr1b1 ENSDARG00000006215 2511 1.933 - 0.988 - - - - 0.945 - - aldo-keto reductase family 1, member B1 (aldose reductase) [Source:ZFIN;Acc:ZDB-GENE-040625-7]
13. si:ch211-114c12.2 ENSDARG00000028542, ENSDARG00000111053 5495 1.929 - 0.984 - - - - 0.945 - - si:ch211-114c12.2 [Source:ZFIN;Acc:ZDB-GENE-030131-8522]
14. dlst ENSDARG00000014230, ENSDARG00000113407 6282 1.912 - 0.983 - - - - 0.929 - - dihydrolipoamide S-succinyltransferase [Source:ZFIN;Acc:ZDB-GENE-030326-1]
15. gpc4 ENSDARG00000015472 2529 1.911 - 0.988 - - - - 0.923 - - glypican 4 [Source:ZFIN;Acc:ZDB-GENE-011119-1]
16. CU019646.2 CU019646.2 519 1.89 - 0.988 - - - - 0.902 - -
17. clta ENSDARG00000045618, ENSDARG00000115484 11767 1.867 - 0.974 - - - 0.893 - - - clathrin, light chain A [Source:ZFIN;Acc:ZDB-GENE-040426-1986]
18. eif3s10 ENSDARG00000076815 10822 1.809 - 0.838 - - - - 0.971 - - eukaryotic translation initiation factor 3, subunit 10 (theta) [Source:ZFIN;Acc:ZDB-GENE-030131-5726]
19. cdca7a ENSDARG00000077620 9345 1.799 - - - - - 0.850 0.949 - - cell division cycle associated 7a [Source:ZFIN;Acc:ZDB-GENE-050417-29]
20. setbp1 ENSDARG00000093799 4499 1.787 - - - - - 0.834 0.953 - - SET binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-060526-72]
21. WDR1 ENSDARG00000114022 7532 1.776 - 0.941 - - - - 0.835 - - WD repeat domain 1 [Source:HGNC Symbol;Acc:HGNC:12754]
22. calr ENSDARG00000076290 13987 1.769 - 0.961 - - - 0.808 - - - calreticulin [Source:ZFIN;Acc:ZDB-GENE-030131-4042]
23. rhoaa ENSDARG00000026845 6900 1.769 - - - - - 0.833 0.936 - - ras homolog gene family, member Aa [Source:ZFIN;Acc:ZDB-GENE-040426-2150]
24. wasf3 wasf3 3287 1.758 - 0.987 - - - 0.771 - - -
25. kmt2bb ENSDARG00000060697 5230 1.753 - - - - - 0.816 0.937 - - lysine (K)-specific methyltransferase 2Bb [Source:ZFIN;Acc:ZDB-GENE-080521-1]
26. ralbp1 ENSDARG00000078653 2440 1.746 - - - - - 0.813 0.933 - - ralA binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2098]
27. arhgap1 ENSDARG00000024324 6904 1.746 - 0.986 - - - - - - 0.760 Rho GTPase activating protein 1 [Source:ZFIN;Acc:ZDB-GENE-050417-305]
28. dnajc5aa ENSDARG00000042948 2885 1.744 - 0.991 - - - - - - 0.753 DnaJ (Hsp40) homolog, subfamily C, member 5aa [Source:ZFIN;Acc:ZDB-GENE-031113-20]
29. smo ENSDARG00000002952 6411 1.742 - 0.985 - - - 0.757 - - - smoothened, frizzled class receptor [Source:ZFIN;Acc:ZDB-GENE-980526-89]
30. polr2d ENSDARG00000076509 3386 1.735 - 0.990 - - - - - - 0.745 polymerase (RNA) II (DNA directed) polypeptide D [Source:ZFIN;Acc:ZDB-GENE-040714-2]
31. ebna1bp2 ENSDARG00000054980 4621 1.722 - 0.986 - 0.736 - - - - - EBNA1 binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6989]
32. nxn ENSDARG00000033978, ENSDARG00000115888 1683 1.712 - 0.991 - - - 0.721 - - - nucleoredoxin [Source:ZFIN;Acc:ZDB-GENE-050522-75]
33. rab11a ENSDARG00000041450, ENSDARG00000109465 7418 1.703 - - - - - - 0.945 - 0.758 RAB11a, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-041114-53]
34. si:ch73-18b11.1 si:ch73-18b11.1 3840 1.702 - - - - - - 0.917 - 0.785
35. CWC15 ENSDARG00000013382 8969 1.699 - - - - - 0.739 0.960 - - CWC15 spliceosome-associated protein homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040625-10]
36. pfdn2 ENSDARG00000025391, ENSDARG00000110096 3176 1.697 - - - - - 0.754 0.943 - - prefoldin subunit 2 [Source:ZFIN;Acc:ZDB-GENE-060519-27]
37. CR847934.1 CR847934.1 2658 1.696 - 0.987 - - - 0.709 - - -
38. sipa1l2 ENSDARG00000061640 4545 1.696 - 0.991 - - - 0.705 - - - signal-induced proliferation-associated 1 like 2 [Source:ZFIN;Acc:ZDB-GENE-050208-66]
39. txnrd1 11401 1.695 - 0.980 - 0.715 - - - - - thioredoxin reductase 1
40. cstf3 ENSDARG00000018904 6111 1.694 - - - - - 0.733 0.961 - - cleavage stimulation factor, 3' pre-RNA, subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1997]
41. hnrnpa0b ENSDARG00000036162, ENSDARG00000112653 27740 1.686 - - - - - 0.747 0.939 - - heterogeneous nuclear ribonucleoprotein A0b [Source:ZFIN;Acc:ZDB-GENE-030131-6154]
42. cbsb ENSDARG00000010946 5779 1.678 - - - - - 0.746 0.932 - - cystathionine-beta-synthase b [Source:ZFIN;Acc:ZDB-GENE-021030-3]
43. xpo1b ENSDARG00000063229 2529 1.678 - - - - - 0.737 0.941 - - exportin 1 (CRM1 homolog, yeast) b [Source:ZFIN;Acc:ZDB-GENE-070530-6]
44. lsm4 ENSDARG00000023852 6083 1.672 - - - - - - 0.968 - 0.704 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:ZFIN;Acc:ZDB-GENE-040426-1652]
45. sppl3 ENSDARG00000025220 1892 1.667 - - - - - - 0.926 - 0.741 signal peptide peptidase 3 [Source:ZFIN;Acc:ZDB-GENE-050913-71]
46. wu:fk48d07 wu:fk48d07 13245 1.665 - - - - - - 0.904 - 0.761
47. hdgfrp2 7462 1.662 - - - - - 0.722 0.940 - - hepatoma-derived growth factor-related protein 2, transcript variant X1
48. hoxa10b ENSDARG00000031337 3992 1.662 - - - - - 0.720 0.942 - - homeobox A10b [Source:ZFIN;Acc:ZDB-GENE-990415-97]
49. zgc:101846 15202 1.653 - - - - - - 0.910 - 0.743 zgc:101846
50. znf703 ENSDARG00000035563, ENSDARG00000112912 2226 1.65 - - - - - 0.727 0.923 - - zinc finger protein 703 [Source:ZFIN;Acc:ZDB-GENE-010717-1]
51. h1f0 ENSDARG00000038559 39781 1.648 - - - - - 0.838 0.810 - - H1 histone family, member 0 [Source:ZFIN;Acc:ZDB-GENE-030131-337]
52. hfe2 4113 1.634 - - - - - 0.711 0.923 - - hemochromatosis type 2
53. id2a ENSDARG00000055283 7428 1.63 - - - - - 0.702 0.928 - - inhibitor of DNA binding 2a [Source:ZFIN;Acc:ZDB-GENE-020910-1]
54. snrpd1 ENSDARG00000011648 8615 1.611 - - 0.780 - - 0.831 - - - small nuclear ribonucleoprotein D1 polypeptide [Source:ZFIN;Acc:ZDB-GENE-020419-14]
55. rpa1 ENSDARG00000003938 4403 1.587 - 0.846 - - - - 0.741 - - replication protein A1 [Source:ZFIN;Acc:ZDB-GENE-030912-3]
56. SNRPG ENSDARG00000099667 18697 1.584 - - - - - 0.800 - - 0.784 small nuclear ribonucleoprotein polypeptide G [Source:ZFIN;Acc:ZDB-GENE-040912-105]
57. CREBZF ENSDARG00000089787 4261 1.583 - - - - - 0.819 - - 0.764 CREB/ATF bZIP transcription factor [Source:ZFIN;Acc:ZDB-GENE-030131-8015]
58. zgc:158409 zgc:158409 21963 1.58 - - - - - 0.787 0.793 - -
59. psmc4 ENSDARG00000027099, ENSDARG00000109415 6643 1.579 0.753 - - - - 0.826 - - - proteasome 26S subunit, ATPase 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5083]
60. ddx19 ENSDARG00000005699 4602 1.579 - - - - - 0.836 - - 0.743 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-020419-30]
61. hdac1 ENSDARG00000015427 19804 1.569 - - - - - 0.852 - - 0.717 histone deacetylase 1 [Source:ZFIN;Acc:ZDB-GENE-020419-32]
62. sumo3a ENSDARG00000028119 13447 1.563 0.740 - - - - 0.823 - - - small ubiquitin-like modifier 3a [Source:ZFIN;Acc:ZDB-GENE-040426-2133]
63. rtf1 ENSDARG00000008947 6596 1.56 - - - - - 0.833 - - 0.727 RTF1 homolog, Paf1/RNA polymerase II complex component [Source:ZFIN;Acc:ZDB-GENE-030131-6778]
64. rpl13 ENSDARG00000099380 20663 1.558 - - - - - 0.706 0.852 - - ribosomal protein L13 [Source:ZFIN;Acc:ZDB-GENE-031007-1]
65. ddx39ab ENSDARG00000015111 11619 1.553 0.750 - - - - 0.803 - - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab [Source:ZFIN;Acc:ZDB-GENE-040426-2902]
66. h2afva ENSDARG00000068820 16427 1.544 - - - 0.753 - 0.791 - - - H2A histone family, member Va [Source:ZFIN;Acc:ZDB-GENE-020717-1]
67. snrpa ENSDARG00000018890 4593 1.543 - - - - - 0.806 - - 0.737 small nuclear ribonucleoprotein polypeptide A [Source:ZFIN;Acc:ZDB-GENE-030131-2841]
68. fam133b ENSDARG00000013863 5070 1.539 0.749 - - - - - - 0.790 - family with sequence similarity 133, member B [Source:ZFIN;Acc:ZDB-GENE-060503-229]
69. psma8 ENSDARG00000010965 8321 1.532 - - - - - 0.719 0.813 - - proteasome subunit alpha 8 [Source:ZFIN;Acc:ZDB-GENE-040426-2194]
70. spcs2 ENSDARG00000042823 10032 1.528 - - 0.706 - - 0.822 - - - signal peptidase complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-050320-32]
71. creb1a ENSDARG00000053586 5068 1.526 - - - - - 0.804 - - 0.722 cAMP responsive element binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-040426-750]
72. FNBP4 ENSDARG00000051800 2839 1.524 - - - - - 0.773 - - 0.751 formin binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-130530-633]
73. chaf1a ENSDARG00000062152, ENSDARG00000114749 5342 1.524 - - - - - 0.759 - - 0.765 chromatin assembly factor 1, subunit A (p150) [Source:ZFIN;Acc:ZDB-GENE-030131-5366]
74. snrpf ENSDARG00000105037 10241 1.521 0.717 - - - - 0.804 - - - small nuclear ribonucleoprotein polypeptide F [Source:ZFIN;Acc:ZDB-GENE-040930-9]
75. tcf7l1b ENSDARG00000007369 2785 1.518 - - - - - 0.796 - - 0.722 transcription factor 7 like 1b [Source:ZFIN;Acc:ZDB-GENE-991110-10]
76. u2af1 ENSDARG00000015325 3217 1.516 - - - - - 0.785 - - 0.731 U2 small nuclear RNA auxiliary factor 1 [Source:ZFIN;Acc:ZDB-GENE-020419-1]
77. nono ENSDARG00000020482, ENSDARG00000115783 12482 1.514 - - - - - 0.751 0.763 - - non-POU domain containing, octamer-binding [Source:ZFIN;Acc:ZDB-GENE-030131-713]
78. eif3ba ENSDARG00000059654 22960 1.509 - - - - - 0.764 0.745 - - eukaryotic translation initiation factor 3, subunit Ba [Source:ZFIN;Acc:ZDB-GENE-030131-2748]
79. ier5 ENSDARG00000009881, ENSDARG00000111680 11432 1.502 - - 0.724 - - 0.778 - - - immediate early response 5 [Source:ZFIN;Acc:ZDB-GENE-030616-127]
80. ncor1 ENSDARG00000035285, ENSDARG00000113129 4234 1.5 - - - - - 0.782 - - 0.718 nuclear receptor corepressor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-993]
81. znf319 znf319 3027 1.5 - - - - - 0.711 - - 0.789
82. srsf5a ENSDARG00000029818 15600 1.49 0.722 - - - - 0.768 - - - serine/arginine-rich splicing factor 5a [Source:ZFIN;Acc:ZDB-GENE-030131-7336]
83. serf2 ENSDARG00000074340, ENSDARG00000117120 21385 1.489 0.727 - - - - 0.762 - - - small EDRK-rich factor 2 [Source:ZFIN;Acc:ZDB-GENE-041108-1]
84. rtca ENSDARG00000002215 3558 1.487 - - - - - 0.762 - - 0.725 RNA 3'-terminal phosphate cyclase [Source:ZFIN;Acc:ZDB-GENE-030131-9687]
85. znf827 ENSDARG00000076171 6304 1.485 - - - - - 0.757 - - 0.728 zinc finger protein 827 [Source:ZFIN;Acc:ZDB-GENE-080728-3]
86. ppp5c ENSDARG00000034313 8794 1.484 - - - - - 0.710 0.774 - - protein phosphatase 5, catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-050327-75]
87. rsl24d1 ENSDARG00000040439 13537 1.483 0.736 - - - - 0.747 - - - ribosomal L24 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1925]
88. rbb4l ENSDARG00000015208 5542 1.483 - - 0.732 - - 0.751 - - - retinoblastoma binding protein 4, like [Source:ZFIN;Acc:ZDB-GENE-030131-848]
89. lypla2 ENSDARG00000053656 8971 1.479 - - - - - 0.772 - - 0.707 lysophospholipase II [Source:ZFIN;Acc:ZDB-GENE-040426-1715]
90. med10 ENSDARG00000070623 5134 1.477 - - - 0.746 - - - - 0.731 mediator complex subunit 10 [Source:ZFIN;Acc:ZDB-GENE-070117-2423]
91. u2af2b ENSDARG00000011740 6946 1.472 - - 0.710 - - 0.762 - - - U2 small nuclear RNA auxiliary factor 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1881]
92. nrarpa ENSDARG00000091419, ENSDARG00000111485 7867 1.469 - - - - - 0.731 - - 0.738 NOTCH regulated ankyrin repeat protein a [Source:ZFIN;Acc:ZDB-GENE-030515-6]
93. nfya ENSDARG00000042004, ENSDARG00000114231 6606 1.467 - - 0.702 - - 0.765 - - - nuclear transcription factor Y, alpha [Source:ZFIN;Acc:ZDB-GENE-010501-1]
94. znf292a ENSDARG00000016763 2253 1.46 - - - - - 0.747 - - 0.713 zinc finger protein 292a [Source:ZFIN;Acc:ZDB-GENE-071004-18]
95. slmo2 slmo2 5559 1.459 - - - - - 0.734 - 0.725 -
96. eif3c ENSDARG00000016443 18003 1.458 0.735 0.723 - - - - - - - eukaryotic translation initiation factor 3, subunit C [Source:ZFIN;Acc:ZDB-GENE-030131-6166]
97. hnrnpul1 ENSDARG00000040564 6550 1.455 - - - - 0.727 - - - 0.728 heterogeneous nuclear ribonucleoprotein U-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2432]
98. lsm8 ENSDARG00000091656, ENSDARG00000111914 2751 1.455 - - - - - 0.734 - - 0.721 LSM8 homolog, U6 small nuclear RNA associated [Source:ZFIN;Acc:ZDB-GENE-070629-3]
99. atpif1a 6030 1.451 - - - 0.706 - 0.745 - - - ATPase inhibitory factor 1a
100. xpo7 ENSDARG00000005540, ENSDARG00000110221 4566 1.451 - 0.728 - - - - - - 0.723 exportin 7 [Source:ZFIN;Acc:ZDB-GENE-060628-2]

There are 930 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA