Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for ska3

Gene Name Gene ID Reads Annotation
ska3 ENSDARG00000069917, ENSDARG00000114978 497 spindle and kinetochore associated complex subunit 3 [Source:ZFIN;Acc:ZDB-GENE-030131-2997]










Genes with expression patterns similar to ska3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ska3 ENSDARG00000069917, ENSDARG00000114978 497 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 spindle and kinetochore associated complex subunit 3 [Source:ZFIN;Acc:ZDB-GENE-030131-2997]
2. DPEP3 DPEP3 53 1.732 0.937 0.795 - - - - - - -
3. FAM26E FAM26E 79 1.726 0.934 - - - - - 0.792 - -
4. polr1b ENSDARG00000077469, ENSDARG00000115880 313 1.645 0.811 - - - - - 0.834 - - RNA polymerase I subunit B [Source:ZFIN;Acc:ZDB-GENE-040426-1598]
5. CCNJ ENSDARG00000059917 115 1.617 0.912 0.705 - - - - - - - cyclin J [Source:ZFIN;Acc:ZDB-GENE-100721-4]
6. idua ENSDARG00000062904 105 1.615 0.851 0.764 - - - - - - - iduronidase, alpha-L- [Source:ZFIN;Acc:ZDB-GENE-060526-29]
7. BX469922.1 BX469922.1 133 1.602 0.803 - - - - - 0.799 - -
8. si:ch211-218d20.13 si:ch211-218d20.13 5488 1.565 - - - - - 0.793 0.772 - -
9. polg2 ENSDARG00000074933 117 1.56 0.806 - - - - - 0.754 - - polymerase (DNA directed), gamma 2, accessory subunit [Source:ZFIN;Acc:ZDB-GENE-060810-116]
10. nsmce4a ENSDARG00000024311 125 1.509 0.786 - - - - - 0.723 - - NSE4 homolog A, SMC5-SMC6 complex component [Source:ZFIN;Acc:ZDB-GENE-050522-111]
11. plag1 ENSDARG00000051926 275 1.493 0.785 - - - - - 0.708 - - pleiomorphic adenoma gene 1 [Source:ZFIN;Acc:ZDB-GENE-060302-2]
12. si:ch211-197n1.2 58 1.489 - 0.735 - - - - 0.754 - - si:ch211-197n1.2, transcript variant X1
13. zgc:110821 ENSDARG00000077085 210 1.458 - 0.707 - - - - 0.751 - - zgc:110821 [Source:ZFIN;Acc:ZDB-GENE-050227-8]
14. sorbs1 ENSDARG00000103435 2297 1 - - - - - 1.000 - - - sorbin and SH3 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-090313-168]
15. RSBN1 RSBN1 599 1 - - - - - 1.000 - - -
16. fam129bb ENSDARG00000008026, ENSDARG00000111074 702 1 - - - - - 1.000 - - - family with sequence similarity 129, member Bb [Source:ZFIN;Acc:ZDB-GENE-030131-6218]
17. nrip1a ENSDARG00000068965 684 1 - - - - - 1.000 - - - nuclear receptor interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-040723-8]
18. anks1b ENSDARG00000003512 847 1 - - - - - 1.000 - - - ankyrin repeat and sterile alpha motif domain containing 1B [Source:ZFIN;Acc:ZDB-GENE-041210-349]
19. MYADM ENSDARG00000086815 659 1 - - - - - 1.000 - - - myeloid associated differentiation marker [Source:HGNC Symbol;Acc:HGNC:7544]
20. SCARNA6 SCARNA6 258 1 - - - - - 1.000 - - -
21. acot7 ENSDARG00000018653 693 1 - - - - - 1.000 - - - acyl-CoA thioesterase 7 [Source:ZFIN;Acc:ZDB-GENE-040912-42]
22. h1m ENSDARG00000102892 319 1 - - - - - 1.000 - - - linker histone H1M [Source:ZFIN;Acc:ZDB-GENE-030131-5614]
23. hnrnpua ENSDARG00000015206 4012 1 - - - - - 1.000 - - - heterogeneous nuclear ribonucleoprotein Ua [Source:ZFIN;Acc:ZDB-GENE-030131-3731]
24. TMEM216 ENSDARG00000091576 357 1 - - - - - 1.000 - - - transmembrane protein 216 [Source:HGNC Symbol;Acc:HGNC:25018]
25. cyb5r1 ENSDARG00000018966, ENSDARG00000112062 1017 1 - - - - - 1.000 - - - cytochrome b5 reductase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8497]
26. kif14 ENSDARG00000062187, ENSDARG00000112389 653 1 - - - - - 1.000 - - - kinesin family member 14 [Source:ZFIN;Acc:ZDB-GENE-030131-5759]
27. fntb ENSDARG00000027916 736 1 - - - - - 1.000 - - - farnesyltransferase, CAAX box, beta [Source:ZFIN;Acc:ZDB-GENE-030131-2220]
28. aldh8a1 ENSDARG00000036776, ENSDARG00000115119 462 0.999 - - - - - 0.999 - - - aldehyde dehydrogenase 8 family, member A1 [Source:ZFIN;Acc:ZDB-GENE-040912-3]
29. erlin2 ENSDARG00000095968, ENSDARG00000110551 1023 0.999 - - - - - 0.999 - - - ER lipid raft associated 2 [Source:NCBI gene;Acc:100151163]
30. hsd11b3a hsd11b3a 1388 0.999 - - - - - 0.999 - - -
31. ppp2r5ea ENSDARG00000015474 2179 0.999 - - - - - 0.999 - - - protein phosphatase 2, regulatory subunit B', epsilon isoform a [Source:ZFIN;Acc:ZDB-GENE-030904-7]
32. cecr1a 836 0.999 - - - - - 0.999 - - - cat eye syndrome chromosome region, candidate 1a
33. mrpl45 ENSDARG00000044942, ENSDARG00000114416, ENSDARG00000115767 1599 0.999 - - - - - 0.999 - - - mitochondrial ribosomal protein L45 [Source:ZFIN;Acc:ZDB-GENE-040426-1041]
34. BX571712.1 ENSDARG00000097833 764 0.999 - - - - - 0.999 - - -
35. arf4a ENSDARG00000045989, ENSDARG00000103858 2545 0.999 - - - - - 0.999 - - - ADP-ribosylation factor 4a [Source:ZFIN;Acc:ZDB-GENE-040801-109]
36. wipi1 ENSDARG00000040657 2732 0.999 - - - - - 0.999 - - - WD repeat domain, phosphoinositide interacting 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1404]
37. clcn3 ENSDARG00000003269, ENSDARG00000110064 2961 0.998 - - - - - 0.998 - - - chloride channel 3 [Source:ZFIN;Acc:ZDB-GENE-030131-1699]
38. KRTCAP2 ENSDARG00000070386 10103 0.998 - - - - - 0.998 - - - keratinocyte associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-060825-91]
39. sec22a ENSDARG00000078328 1207 0.998 - - - - - 0.998 - - - SEC22 homolog A, vesicle trafficking protein [Source:ZFIN;Acc:ZDB-GENE-030131-3553]
40. osbp ENSDARG00000004634 1889 0.998 - - - - - 0.998 - - - oxysterol binding protein [Source:ZFIN;Acc:ZDB-GENE-090312-18]
41. hoxc11a ENSDARG00000070351 1783 0.998 - - - - - 0.998 - - - homeobox C11a [Source:ZFIN;Acc:ZDB-GENE-990415-111]
42. zgc:174855 ENSDARG00000094559 33515 0.998 - - - - - 0.998 - - - zgc:174855 [Source:ZFIN;Acc:ZDB-GENE-071004-74]
43. cenpf ENSDARG00000055133 5267 0.998 - - - - - 0.998 - - - centromere protein F [Source:ZFIN;Acc:ZDB-GENE-041111-205]
44. tefa ENSDARG00000039117, ENSDARG00000109532 3065 0.998 - - - - - 0.998 - - - thyrotrophic embryonic factor a [Source:ZFIN;Acc:ZDB-GENE-990415-264]
45. csrp2 ENSDARG00000011961 1003 0.998 - - - - - 0.998 - - - cysteine and glycine-rich protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1863]
46. zgc:101129 zgc:101129 641 0.998 - - - - - 0.998 - - -
47. ppp1cab ENSDARG00000071566 4350 0.997 - - - - - 0.997 - - - protein phosphatase 1, catalytic subunit, alpha isozyme b [Source:ZFIN;Acc:ZDB-GENE-030131-5512]
48. gmppb ENSDARG00000017658 3484 0.997 - - - - - 0.997 - - - GDP-mannose pyrophosphorylase B [Source:ZFIN;Acc:ZDB-GENE-040801-234]
49. zfr ENSDARG00000027109, ENSDARG00000116459 4171 0.996 - - - - - 0.996 - - - zinc finger RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-378]
50. cdk1 ENSDARG00000087554, ENSDARG00000110840 8297 0.996 - - - - - 0.996 - - - cyclin-dependent kinase 1 [Source:ZFIN;Acc:ZDB-GENE-010320-1]
51. hsdl2 ENSDARG00000002523 2746 0.996 - - - - - 0.996 - - - hydroxysteroid dehydrogenase like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1066]
52. scinla ENSDARG00000102415, ENSDARG00000117110 1996 0.996 - - - - - 0.996 - - - scinderin like a [Source:ZFIN;Acc:ZDB-GENE-030131-2005]
53. ELOVL4 ELOVL4 3026 0.996 - - - - - 0.996 - - -
54. rca2.1 ENSDARG00000056075 3410 0.996 - - - - - 0.996 - - - regulator of complement activation group 2 gene 1 [Source:ZFIN;Acc:ZDB-GENE-050320-60]
55. ndufs4 ENSDARG00000052840, ENSDARG00000110036 3441 0.996 - - - - - 0.996 - - - NADH:ubiquinone oxidoreductase subunit S4 [Source:ZFIN;Acc:ZDB-GENE-050522-421]
56. calm2b 3890 0.995 - - - - - 0.995 - - - calmodulin 2b, (phosphorylase kinase, delta)
57. mid1ip1a ENSDARG00000041051 5425 0.995 - - - - - 0.995 - - - MID1 interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-990415-81]
58. rcc2 ENSDARG00000011510, ENSDARG00000115981 7997 0.995 - - - - - 0.995 - - - regulator of chromosome condensation 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2213]
59. COL4A3BP COL4A3BP 3288 0.995 - - - - - 0.995 - - -
60. CABZ01080590.2 CABZ01080590.2 2038 0.995 - - - - - 0.995 - - -
61. WDR83OS ENSDARG00000025554 7117 0.995 - - - - - 0.995 - - - WD repeat domain 83 opposite strand [Source:ZFIN;Acc:ZDB-GENE-040426-1674]
62. zfp36l1b ENSDARG00000021443 2974 0.995 - - - - - 0.995 - - - zinc finger protein 36, C3H type-like 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2391]
63. lpp ENSDARG00000023578 3581 0.994 - - - - - 0.994 - - - LIM domain containing preferred translocation partner in lipoma [Source:ZFIN;Acc:ZDB-GENE-040426-918]
64. si:ch211-151o1.2 si:ch211-151o1.2 3580 0.993 - - - - - 0.993 - - -
65. CR936437.1 CR936437.1 6465 0.993 - - - - - 0.993 - - -
66. slc2a2 ENSDARG00000056196 2061 0.993 - - - - - 0.993 - - - solute carrier family 2 (facilitated glucose transporter), member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1213]
67. luc7l3 ENSDARG00000014366 4416 0.992 - - - - - 0.992 - - - LUC7-like 3 pre-mRNA splicing factor [Source:ZFIN;Acc:ZDB-GENE-060616-375]
68. hspg2 ENSDARG00000076564 3440 0.992 - - - - - 0.992 - - - heparan sulfate proteoglycan 2 [Source:ZFIN;Acc:ZDB-GENE-080807-4]
69. ak3 ENSDARG00000058226 3160 0.992 - - - - - 0.992 - - - adenylate kinase 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2142]
70. malt1a malt1a 903 0.992 - - - - - 0.992 - - -
71. gm2a ENSDARG00000088439 5387 0.992 - - - - - 0.992 - - - GM2 ganglioside activator [Source:ZFIN;Acc:ZDB-GENE-050417-373]
72. ube2i ube2i 13024 0.991 - - - - - 0.991 - - -
73. wu:fb15e04 wu:fb15e04 1713 0.991 - - - - - 0.991 - - -
74. mcl1b ENSDARG00000008363 3097 0.991 - - - - - 0.991 - - - MCL1, BCL2 family apoptosis regulator b [Source:ZFIN;Acc:ZDB-GENE-030825-1]
75. fam46ba 4575 0.99 - - - - - 0.990 - - - family with sequence similarity 46, member Ba
76. srsf1a ENSDARG00000057691, ENSDARG00000111226 15525 0.989 - - - - - 0.989 - - - serine/arginine-rich splicing factor 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1950]
77. rnaseka ENSDARG00000069461 10304 0.989 - - - - - 0.989 - - - ribonuclease, RNase K a [Source:ZFIN;Acc:ZDB-GENE-060825-301]
78. cfl2 ENSDARG00000014106 8051 0.989 - - - - - 0.989 - - - cofilin 2 (muscle) [Source:ZFIN;Acc:ZDB-GENE-040426-1815]
79. nr2f6a ENSDARG00000003607 4779 0.989 - - - - - 0.989 - - - nuclear receptor subfamily 2, group F, member 6a [Source:ZFIN;Acc:ZDB-GENE-030131-4362]
80. ndufb7 ENSDARG00000033789 5898 0.989 - - - - - 0.989 - - - NADH:ubiquinone oxidoreductase subunit B7 [Source:ZFIN;Acc:ZDB-GENE-040426-1886]
81. thbs1b ENSDARG00000010785 3095 0.989 - - - - - 0.989 - - - thrombospondin 1b [Source:ZFIN;Acc:ZDB-GENE-020708-1]
82. rhpn2 ENSDARG00000014577 2537 0.988 - - - - - 0.988 - - - rhophilin, Rho GTPase binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9927]
83. hspa9 ENSDARG00000003035, ENSDARG00000114629 13898 0.988 - - - - - 0.988 - - - heat shock protein 9 [Source:ZFIN;Acc:ZDB-GENE-030828-12]
84. ap2m1a ENSDARG00000002790 9781 0.985 - - - - - 0.985 - - - adaptor related protein complex 2 subunit mu 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9784]
85. sdpra sdpra 4594 0.984 - - - - - 0.984 - - -
86. gpm6aa ENSDARG00000055455, ENSDARG00000110942 9156 0.983 - - - - - 0.983 - - - glycoprotein M6Aa [Source:ZFIN;Acc:ZDB-GENE-030710-7]
87. prdx2 ENSDARG00000025350 11194 0.982 - - - - - 0.982 - - - peroxiredoxin 2 [Source:ZFIN;Acc:ZDB-GENE-030326-2]
88. eif3c ENSDARG00000016443 18003 0.981 - - - - - 0.981 - - - eukaryotic translation initiation factor 3, subunit C [Source:ZFIN;Acc:ZDB-GENE-030131-6166]
89. cplx2l ENSDARG00000018997 3975 0.98 - - - - - 0.980 - - - complexin 2, like [Source:ZFIN;Acc:ZDB-GENE-040718-160]
90. kctd5 kctd5 13455 0.98 - - - - - 0.980 - - -
91. ost4 ENSDARG00000096118 7679 0.98 - - - - - 0.980 - - - oligosaccharyltransferase complex subunit 4 (non-catalytic) [Source:ZFIN;Acc:ZDB-GENE-110307-1]
92. cplx2 ENSDARG00000061918, ENSDARG00000111920 3673 0.976 - - - - - 0.976 - - - complexin 2 [Source:ZFIN;Acc:ZDB-GENE-081113-1]
93. CR678040.1 CR678040.1 117 0.976 0.976 - - - - - - - -
94. tceb1b 14935 0.973 - - - - - 0.973 - - - transcription elongation factor B (SIII), polypeptide 1b
95. TTC17 ENSDARG00000044812 124 0.973 0.973 - - - - - - - - tetratricopeptide repeat domain 17 [Source:ZFIN;Acc:ZDB-GENE-100422-15]
96. eif2b1_1 ENSDARG00000091402, ENSDARG00000114640 36 0.973 0.973 - - - - - - - - eukaryotic translation initiation factor 2B, subunit 1 alpha [Source:ZFIN;Acc:ZDB-GENE-040625-25]
97. bzw1a ENSDARG00000010481 28451 0.968 - - - - - 0.968 - - - basic leucine zipper and W2 domains 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3951]
98. USMG5 USMG5 10356 0.968 - - - - - 0.968 - - -
99. lpcat4 ENSDARG00000035028 167 0.966 0.966 - - - - - - - - lysophosphatidylcholine acyltransferase 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5777]
100. map2 ENSDARG00000055052 6062 0.966 - - - - - 0.966 - - - microtubule-associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-041010-118]

There are 776 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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