Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for ska1

Gene Name Gene ID Reads Annotation
ska1 ENSDARG00000039354 814 spindle and kinetochore associated complex subunit 1 [Source:ZFIN;Acc:ZDB-GENE-040718-334]










Genes with expression patterns similar to ska1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ska1 ENSDARG00000039354 814 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 spindle and kinetochore associated complex subunit 1 [Source:ZFIN;Acc:ZDB-GENE-040718-334]
2. lzts3b ENSDARG00000058558 166 1.68 0.901 - - - - 0.779 - - - leucine zipper, putative tumor suppressor family member 3b [Source:ZFIN;Acc:ZDB-GENE-110411-249]
3. GALNT9 ENSDARG00000006832 120 1.641 0.871 - - - - 0.770 - - - polypeptide N-acetylgalactosaminyltransferase 9 [Source:ZFIN;Acc:ZDB-GENE-060526-21]
4. fbxo41 ENSDARG00000078908 95 1.626 0.868 - - - - 0.758 - - - F-box protein 41 [Source:ZFIN;Acc:ZDB-GENE-090313-350]
5. zgc:100906 ENSDARG00000033599 344 1.62 0.893 - - - - 0.727 - - - zgc:100906 [Source:ZFIN;Acc:ZDB-GENE-040801-20]
6. LRFN5_1 LRFN5_1 96 1.614 0.890 - - - - 0.724 - - -
7. nhlh2 ENSDARG00000025495 1860 1.59 0.846 - - - - 0.744 - - - nescient helix loop helix 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1809]
8. phf8 ENSDARG00000006584 476 1.575 - - - - - 0.832 0.743 - - PHD finger protein 8 [Source:ZFIN;Acc:ZDB-GENE-060419-1]
9. rgs17 ENSDARG00000039435 590 1.571 0.798 - - - - 0.773 - - - regulator of G protein signaling 17 [Source:ZFIN;Acc:ZDB-GENE-040718-229]
10. FP245444.1 FP245444.1 1922 1.552 - - - - - 0.792 0.760 - -
11. cops5 ENSDARG00000057624 1485 1.551 - 0.767 - - - - - 0.784 - COP9 signalosome subunit 5 [Source:ZFIN;Acc:ZDB-GENE-040426-1686]
12. NPAS3 ENSDARG00000109820 362 1.544 - - - - - 0.739 - 0.805 - neuronal PAS domain protein 3 [Source:HGNC Symbol;Acc:HGNC:19311]
13. dtnbp1b ENSDARG00000055206 64 1.541 0.824 - - - - 0.717 - - - dystrobrevin binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-060503-889]
14. tspan3b ENSDARG00000053559, ENSDARG00000112641 118 1.518 - - - - - 0.754 - 0.764 - tetraspanin 3b [Source:ZFIN;Acc:ZDB-GENE-070424-42]
15. si:dkey-122c11.9 si:dkey-122c11.9 227 1.518 - - - - - 0.733 - 0.785 -
16. slc25a32a ENSDARG00000089791 511 1.517 0.750 - - - - - - 0.767 - solute carrier family 25 (mitochondrial folate carrier), member 32a [Source:ZFIN;Acc:ZDB-GENE-040426-758]
17. chodl ENSDARG00000034528, ENSDARG00000109583, ENSDARG00000111154 1306 1.496 0.758 0.738 - - - - - - - chondrolectin [Source:ZFIN;Acc:ZDB-GENE-050417-36]
18. rab3aa ENSDARG00000056347, ENSDARG00000114357 160 1.491 0.744 - - - - 0.747 - - - RAB3A, member RAS oncogene family, a [Source:ZFIN;Acc:ZDB-GENE-040801-2]
19. si:dkey-270e21.7 si:dkey-270e21.7 155 1.487 0.730 - - 0.757 - - - - -
20. larp7 ENSDARG00000017315 1194 1.473 - - - - - 0.717 - 0.756 - La ribonucleoprotein domain family, member 7 [Source:ZFIN;Acc:ZDB-GENE-030131-6896]
21. ss18 ENSDARG00000002970 2618 1.436 - 0.730 - - - 0.706 - - - synovial sarcoma translocation, chromosome 18 (H. sapiens) [Source:ZFIN;Acc:ZDB-GENE-030131-4867]
22. mospd2 ENSDARG00000026024 854 1.413 - - - 0.712 - - - 0.701 - motile sperm domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-041114-1]
23. git2a ENSDARG00000061915 884 0.933 - - - - - 0.933 - - - G protein-coupled receptor kinase interacting ArfGAP 2a [Source:ZFIN;Acc:ZDB-GENE-060526-267]
24. ctnnd2a ENSDARG00000062415, ENSDARG00000111725 262 0.925 0.925 - - - - - - - - catenin (cadherin-associated protein), delta 2a [Source:ZFIN;Acc:ZDB-GENE-030616-60]
25. PPM1J ENSDARG00000074690 109 0.924 0.924 - - - - - - - - protein phosphatase, Mg2+/Mn2+ dependent, 1J [Source:ZFIN;Acc:ZDB-GENE-091230-9]
26. fam43b ENSDARG00000070222 92 0.906 0.906 - - - - - - - - family with sequence similarity 43, member B [Source:ZFIN;Acc:ZDB-GENE-040912-11]
27. taf6 ENSDARG00000102998 722 0.905 0.905 - - - - - - - - TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-040912-23]
28. CR391967.1 CR391967.1 135 0.899 0.899 - - - - - - - -
29. EOGT ENSDARG00000022853 366 0.899 - - - - - 0.899 - - - EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase [Source:ZFIN;Acc:ZDB-GENE-120813-8]
30. mis18a ENSDARG00000035333 555 0.898 0.898 - - - - - - - - MIS18 kinetochore protein A [Source:ZFIN;Acc:ZDB-GENE-091204-314]
31. ptprn2 ENSDARG00000035970, ENSDARG00000114075 354 0.891 0.891 - - - - - - - - protein tyrosine phosphatase, receptor type, N polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-030131-3758]
32. parp2 ENSDARG00000079202, ENSDARG00000111737 878 0.89 - - - - - 0.890 - - - poly (ADP-ribose) polymerase 2 [Source:ZFIN;Acc:ZDB-GENE-031113-6]
33. actr3b ENSDARG00000008790 136 0.885 0.885 - - - - - - - - ARP3 actin related protein 3 homolog B [Source:ZFIN;Acc:ZDB-GENE-070424-10]
34. C13H20orf194 C13H20orf194 580 0.885 - - - - - 0.885 - - -
35. gas1b ENSDARG00000067984 1748 0.882 - - - - - 0.882 - - - growth arrest-specific 1b [Source:ZFIN;Acc:ZDB-GENE-050302-79]
36. si:ch211-229l10.12 si:ch211-229l10.12 95 0.878 0.878 - - - - - - - -
37. syt12 ENSDARG00000101776 215 0.878 0.878 - - - - - - - - synaptotagmin XII [Source:ZFIN;Acc:ZDB-GENE-081022-147]
38. scn1lab ENSDARG00000062744 155 0.878 0.878 - - - - - - - - sodium channel, voltage-gated, type I like, alpha b [Source:ZFIN;Acc:ZDB-GENE-060906-1]
39. si:dkey-258p11.1 si:dkey-258p11.1 48 0.876 0.876 - - - - - - - -
40. PAOX PAOX 251 0.875 - - - - - 0.875 - - -
41. amer2 ENSDARG00000075222 594 0.874 - - - - - 0.874 - - - APC membrane recruitment protein 2 [Source:ZFIN;Acc:ZDB-GENE-070719-5]
42. si:dkey-242k1.6 ENSDARG00000101205 112 0.873 0.873 - - - - - - - - si:dkey-242k1.6 [Source:ZFIN;Acc:ZDB-GENE-041008-84]
43. JAKMIP1 ENSDARG00000076090 55 0.873 0.873 - - - - - - - - janus kinase and microtubule interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-110208-7]
44. zgc:194469 ENSDARG00000104367 93 0.873 0.873 - - - - - - - - zgc:194469 [Source:ZFIN;Acc:ZDB-GENE-081022-114]
45. SLC35F4 ENSDARG00000103124 55 0.873 0.873 - - - - - - - - solute carrier family 35, member F4 [Source:ZFIN;Acc:ZDB-GENE-131121-49]
46. rims3 ENSDARG00000062305 202 0.872 0.872 - - - - - - - - regulating synaptic membrane exocytosis 3 [Source:ZFIN;Acc:ZDB-GENE-060503-788]
47. six6a ENSDARG00000025187 40 0.871 0.871 - - - - - - - - SIX homeobox 6a [Source:ZFIN;Acc:ZDB-GENE-040426-1282]
48. TRIM46 TRIM46 73 0.871 0.871 - - - - - - - -
49. WDPCP ENSDARG00000074590 35 0.871 0.871 - - - - - - - - WD repeat containing planar cell polarity effector [Source:ZFIN;Acc:ZDB-GENE-100405-4]
50. chrna9 ENSDARG00000054680 4 0.871 0.871 - - - - - - - - cholinergic receptor, nicotinic, alpha 9 [Source:ZFIN;Acc:ZDB-GENE-090312-63]
51. zgc:114081 ENSDARG00000057899, ENSDARG00000113048 5 0.871 0.871 - - - - - - - - zgc:114081 [Source:ZFIN;Acc:ZDB-GENE-050913-78]
52. cpne5 cpne5 16 0.871 0.871 - - - - - - - -
53. si:dkey-14d8.19 si:dkey-14d8.19 12 0.871 0.871 - - - - - - - -
54. C20H2orf70 C20H2orf70 8 0.871 0.871 - - - - - - - -
55. si:ch211-167j6.3 ENSDARG00000095504 5 0.871 0.871 - - - - - - - - si:ch211-167j6.3 [Source:ZFIN;Acc:ZDB-GENE-070912-145]
56. si:ch211-222k6.2 ENSDARG00000087046 144 0.871 0.871 - - - - - - - - si:ch211-222k6.2 [Source:ZFIN;Acc:ZDB-GENE-030131-9038]
57. nlgn2b ENSDARG00000079251, ENSDARG00000111576 179 0.871 0.871 - - - - - - - - neuroligin 2b [Source:ZFIN;Acc:ZDB-GENE-090918-3]
58. taar16a ENSDARG00000054237 1 0.871 0.871 - - - - - - - - trace amine associated receptor 16a [Source:ZFIN;Acc:ZDB-GENE-100514-1]
59. prpf4 ENSDARG00000067639, ENSDARG00000114457, ENSDARG00000114653 10 0.871 0.871 - - - - - - - - PRP4 pre-mRNA processing factor 4 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-5143]
60. AL935272.2 AL935272.2 37 0.871 0.871 - - - - - - - -
61. zgc:114037_4 57 0.871 0.871 - - - - - - - - zgc:114037
62. CR391962.1 CR391962.1 31 0.871 0.871 - - - - - - - -
63. gpr12 ENSDARG00000062934 7 0.871 0.871 - - - - - - - - G protein-coupled receptor 12 [Source:ZFIN;Acc:ZDB-GENE-100209-3]
64. nrn1la ENSDARG00000069368, ENSDARG00000112044, ENSDARG00000112869 16 0.871 0.871 - - - - - - - - neuritin 1-like a [Source:NCBI gene;Acc:100004307]
65. aspscr1_1 ENSDARG00000105321 4 0.871 0.871 - - - - - - - - alveolar soft part sarcoma chromosome region, candidate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-31]
66. PLEKHG4B PLEKHG4B 1 0.871 0.871 - - - - - - - -
67. ubr1 ENSDARG00000060480 71 0.871 0.871 - - - - - - - - ubiquitin protein ligase E3 component n-recognin 1 [Source:ZFIN;Acc:ZDB-GENE-091110-2]
68. EPM2AIP1 EPM2AIP1 4 0.871 0.871 - - - - - - - -
69. cryaba ENSDARG00000042621 2 0.871 0.871 - - - - - - - - crystallin, alpha B, a [Source:ZFIN;Acc:ZDB-GENE-991119-2]
70. 5S_rRNA_31 5S_rRNA_31 3 0.871 0.871 - - - - - - - -
71. gpr37l1b ENSDARG00000056774, ENSDARG00000114481 143 0.871 0.871 - - - - - - - - G protein-coupled receptor 37 like 1b [Source:ZFIN;Acc:ZDB-GENE-081104-324]
72. fam178a fam178a 29 0.871 0.871 - - - - - - - -
73. nog2 ENSDARG00000043066 233 0.871 0.871 - - - - - - - - noggin 2 [Source:ZFIN;Acc:ZDB-GENE-991206-14]
74. KCNT2 ENSDARG00000075812 23 0.871 0.871 - - - - - - - - potassium channel, subfamily T, member 2 [Source:ZFIN;Acc:ZDB-GENE-130530-783]
75. si:ch211-133l5.7 ENSDARG00000095633 3 0.871 0.871 - - - - - - - - si:ch211-133l5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-117]
76. si:ch211-122l24.2 si:ch211-122l24.2 1 0.871 0.871 - - - - - - - -
77. CNTNAP1 ENSDARG00000074524 73 0.871 0.871 - - - - - - - - contactin associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-030916-2]
78. BX897747.1 ENSDARG00000117746 11 0.871 0.871 - - - - - - - -
79. zgc:112965 ENSDARG00000007787 5 0.871 0.871 - - - - - - - - zgc:112965 [Source:ZFIN;Acc:ZDB-GENE-050522-10]
80. fam73b 76 0.871 0.871 - - - - - - - - family with sequence similarity 73, member B
81. TMEM100_1 TMEM100_1 44 0.871 0.871 - - - - - - - -
82. zgc:172128 ENSDARG00000101883, ENSDARG00000104208 28 0.871 0.871 - - - - - - - - zgc:172128 [Source:ZFIN;Acc:ZDB-GENE-080220-2]
83. si:dkeyp-67a8.4 ENSDARG00000090099, ENSDARG00000092823 1 0.871 0.871 - - - - - - - - si:dkeyp-67a8.4 [Source:ZFIN;Acc:ZDB-GENE-070912-666]
84. bcat1 ENSDARG00000045568 39 0.871 0.871 - - - - - - - - branched chain amino-acid transaminase 1, cytosolic [Source:ZFIN;Acc:ZDB-GENE-030131-9358]
85. CT583709.2 CT583709.2 55 0.871 0.871 - - - - - - - -
86. zgc:174710 13 0.871 0.871 - - - - - - - - zgc:174710
87. KCNIP4 ENSDARG00000088100 86 0.871 0.871 - - - - - - - - potassium voltage-gated channel interacting protein 4 [Source:HGNC Symbol;Acc:HGNC:30083]
88. CABZ01069020.1 ENSDARG00000105806 19 0.871 0.871 - - - - - - - - si:cabz01069020.1 [Source:NCBI gene;Acc:100332930]
89. si:ch211-197k17.3 ENSDARG00000096214 2 0.871 0.871 - - - - - - - - si:ch211-197k17.3 [Source:ZFIN;Acc:ZDB-GENE-110914-193]
90. si:dkey-238o14.1 ENSDARG00000100099 1 0.871 0.871 - - - - - - - - si:dkey-238o14.1 [Source:ZFIN;Acc:ZDB-GENE-081103-10]
91. ndrg1b ENSDARG00000010420 116 0.871 0.871 - - - - - - - - N-myc downstream regulated 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1648]
92. gabrr2a ENSDARG00000052982 21 0.871 0.871 - - - - - - - - gamma-aminobutyric acid (GABA) A receptor, rho 2a [Source:ZFIN;Acc:ZDB-GENE-060825-164]
93. CU896645.1 CU896645.1 10 0.871 0.871 - - - - - - - -
94. zfp64 ENSDARG00000061147 44 0.871 0.871 - - - - - - - - zinc finger protein 64 homolog (mouse) [Source:ZFIN;Acc:ZDB-GENE-031118-80]
95. ncanb ENSDARG00000005783 22 0.871 0.871 - - - - - - - - neurocan b [Source:ZFIN;Acc:ZDB-GENE-050208-586]
96. HIST2H4B HIST2H4B 9 0.871 0.871 - - - - - - - -
97. CLTCL1_1 CLTCL1_1 1 0.871 0.871 - - - - - - - -
98. efr3ba ENSDARG00000033516 19 0.871 0.871 - - - - - - - - EFR3 homolog Ba (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030616-64]
99. nell2b ENSDARG00000062797 854 0.871 0.871 - - - - - - - - neural EGFL like 2b [Source:ZFIN;Acc:ZDB-GENE-030131-8026]
100. BSN_1 BSN_1 21 0.871 0.871 - - - - - - - -

There are 838 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA