Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for six3a

Gene Name Gene ID Reads Annotation
six3a ENSDARG00000058008, ENSDARG00000114971 586 SIX homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-990415-127]










Genes with expression patterns similar to six3a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. six3a ENSDARG00000058008, ENSDARG00000114971 586 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SIX homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-990415-127]
2. amer2 ENSDARG00000075222 594 2.542 - - - 0.710 0.943 - - 0.889 - APC membrane recruitment protein 2 [Source:ZFIN;Acc:ZDB-GENE-070719-5]
3. lhx2b ENSDARG00000031222 517 2.539 - - 0.855 0.776 - - - 0.908 - LIM homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-051220-1]
4. vax1 ENSDARG00000021916, ENSDARG00000114230 152 2.529 - - 0.823 0.745 0.961 - - - - ventral anterior homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-030904-9]
5. sh3glb2a ENSDARG00000008983 452 2.293 - 0.794 - - - 0.723 - 0.776 - SH3-domain GRB2-like endophilin B2a [Source:ZFIN;Acc:ZDB-GENE-061201-8]
6. entpd2a.2 ENSDARG00000033953 389 1.962 - 0.987 - - - - - - 0.975 ectonucleoside triphosphate diphosphohydrolase 2a, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-040724-67]
7. gsg1l ENSDARG00000037390 181 1.922 - 0.946 - - - - - - 0.976 gsg1-like [Source:ZFIN;Acc:ZDB-GENE-050913-27]
8. six3b ENSDARG00000054879 2416 1.902 - - 0.928 0.974 - - - - - SIX homeobox 3b [Source:ZFIN;Acc:ZDB-GENE-990415-128]
9. SPEN ENSDARG00000074245, ENSDARG00000116696 1412 1.872 - - - - 0.895 - - - 0.977 spen family transcriptional repressor [Source:ZFIN;Acc:ZDB-GENE-050309-70]
10. pi4k2b ENSDARG00000013881 1337 1.869 - - - - 0.892 - - - 0.977 phosphatidylinositol 4-kinase type 2 beta [Source:ZFIN;Acc:ZDB-GENE-070112-990]
11. homer3 homer3 1974 1.848 - - - - - - - 0.868 0.980
12. TNFRSF11B ENSDARG00000098377 98 1.835 0.865 0.970 - - - - - - - tumor necrosis factor receptor superfamily, member 11b [Source:ZFIN;Acc:ZDB-GENE-081104-76]
13. TRMT10A ENSDARG00000036678 621 1.834 - 0.860 - - - - - - 0.974 tRNA methyltransferase 10A [Source:ZFIN;Acc:ZDB-GENE-130530-594]
14. wasf3 wasf3 3287 1.807 - - - - 0.855 - - - 0.952
15. epb41l5 ENSDARG00000032324, ENSDARG00000114579 1610 1.802 - - - - - - - 0.826 0.976 erythrocyte membrane protein band 4.1 like 5 [Source:ZFIN;Acc:ZDB-GENE-030616-450]
16. cdc45 ENSDARG00000043720 353 1.801 - 0.892 - - 0.909 - - - - CDC45 cell division cycle 45 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040426-2710]
17. ZNF337_16 ZNF337_16 22 1.789 1.000 - - - - 0.789 - - -
18. si:dkeyp-33c10.5 11 1.789 - - - - - 0.789 1.000 - - si:dkeyp-33c10.5, transcript variant X2
19. necap2 ENSDARG00000046002 4372 1.78 - - - - 0.848 - - - 0.932 NECAP endocytosis associated 2 [Source:ZFIN;Acc:ZDB-GENE-050522-67]
20. kpna4 ENSDARG00000023190 2505 1.779 - - - - 0.805 - - - 0.974 karyopherin alpha 4 (importin alpha 3) [Source:ZFIN;Acc:ZDB-GENE-030131-5584]
21. itpkcb ENSDARG00000067741 2370 1.768 - - - - 0.811 - - - 0.957 inositol-trisphosphate 3-kinase Cb [Source:ZFIN;Acc:ZDB-GENE-080225-27]
22. PPP1R8 PPP1R8 1897 1.764 - - - - 0.873 - - 0.891 -
23. etv1 ENSDARG00000101959 358 1.764 - - - - 0.946 - - 0.818 - ets variant 1 [Source:ZFIN;Acc:ZDB-GENE-070104-1]
24. vhl ENSDARG00000070617 663 1.758 - 0.962 - - - - - 0.796 - von Hippel-Lindau tumor suppressor [Source:ZFIN;Acc:ZDB-GENE-070112-1042]
25. myt1a ENSDARG00000074030, ENSDARG00000116035 2839 1.754 - - - - 0.819 - - 0.935 - myelin transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3885]
26. pde6c ENSDARG00000100397 49 1.753 0.865 - - - - - 0.888 - - phosphodiesterase 6C, cGMP-specific, cone, alpha prime [Source:ZFIN;Acc:ZDB-GENE-040426-1664]
27. cpt1a cpt1a 674 1.749 - - - - 0.927 - - 0.822 -
28. ppig ENSDARG00000044431 3427 1.746 - - - - 0.777 - - - 0.969 peptidylprolyl isomerase G (cyclophilin G) [Source:ZFIN;Acc:ZDB-GENE-040426-2822]
29. chuk ENSDARG00000011662 1668 1.736 - 0.874 - - 0.862 - - - - conserved helix-loop-helix ubiquitous kinase [Source:ZFIN;Acc:ZDB-GENE-040426-1069]
30. ogfr ENSDARG00000037837 1001 1.733 - - - - 0.913 - - 0.820 - opioid growth factor receptor [Source:ZFIN;Acc:ZDB-GENE-030131-377]
31. sec22c ENSDARG00000063387 203 1.731 - 0.912 - - - - - 0.819 - SEC22 homolog C, vesicle trafficking protein [Source:ZFIN;Acc:ZDB-GENE-060227-2]
32. nr2e1 ENSDARG00000017107 340 1.727 - - 0.765 - - - - 0.962 - nuclear receptor subfamily 2, group E, member 1 [Source:ZFIN;Acc:ZDB-GENE-040801-127]
33. NFKBIB ENSDARG00000030087, ENSDARG00000109444 306 1.724 - - - - 0.935 - - 0.789 - nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta [Source:ZFIN;Acc:ZDB-GENE-070705-529]
34. nkx2.1a nkx2.1a 156 1.722 - - 0.923 0.799 - - - - -
35. ndfip1 ENSDARG00000013979, ENSDARG00000111470, ENSDARG00000112351 2550 1.716 - - - - 0.803 - - - 0.913 Nedd4 family interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2767]
36. tmpoa ENSDARG00000007315 3638 1.711 - - - - - - - 0.758 0.953 thymopoietin a [Source:ZFIN;Acc:ZDB-GENE-030131-6003]
37. irx2a ENSDARG00000001785 262 1.697 0.837 - - - - - - 0.860 - iroquois homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-040426-1446]
38. hirip3 ENSDARG00000027749, ENSDARG00000115688 5875 1.692 - 0.869 - - - - - 0.823 - HIRA interacting protein 3 [Source:ZFIN;Acc:ZDB-GENE-030131-5753]
39. CR626962.1 ENSDARG00000096981 220 1.69 - 0.756 - - 0.934 - - - -
40. SENP7 SENP7 1097 1.689 - 0.711 - - - - - - 0.978
41. arhgef18b ENSDARG00000042308 298 1.689 - 0.950 - - - - 0.739 - - rho/rac guanine nucleotide exchange factor (GEF) 18b [Source:ZFIN;Acc:ZDB-GENE-070705-462]
42. bsx ENSDARG00000068976, ENSDARG00000110782 139 1.686 0.865 - - - - - - 0.821 - brain-specific homeobox [Source:ZFIN;Acc:ZDB-GENE-040628-4]
43. aes ENSDARG00000021805, ENSDARG00000115836 1533 1.685 - - - - - - - 0.821 0.864 amino-terminal enhancer of split [Source:ZFIN;Acc:ZDB-GENE-040426-1409]
44. sra1 ENSDARG00000053619 2799 1.683 - - - - 0.720 - - - 0.963 steroid receptor RNA activator 1 [Source:ZFIN;Acc:ZDB-GENE-040625-6]
45. ZNF576 ZNF576 1447 1.683 - - - - 0.860 - - 0.823 -
46. si:dkeyp-106c3.1 ENSDARG00000090623 225 1.68 - - - 0.740 0.940 - - - - si:dkeyp-106c3.1 [Source:ZFIN;Acc:ZDB-GENE-050411-73]
47. scn1ba ENSDARG00000060222, ENSDARG00000115181 76 1.677 - - - - - 0.789 0.888 - - sodium channel, voltage-gated, type I, beta a [Source:ZFIN;Acc:ZDB-GENE-060503-604]
48. mgaa ENSDARG00000078784 1344 1.675 - - - - 0.881 - - 0.794 - MGA, MAX dimerization protein a [Source:ZFIN;Acc:ZDB-GENE-030603-1]
49. xrcc5_1 ENSDARG00000099298 1533 1.672 - 0.907 - - - - - 0.765 - X-ray repair complementing defective repair in Chinese hamster cells 5 [Source:ZFIN;Acc:ZDB-GENE-041008-108]
50. fyna ENSDARG00000011370 1679 1.671 - - - 0.725 - - - 0.946 - FYN proto-oncogene, Src family tyrosine kinase a [Source:ZFIN;Acc:ZDB-GENE-030903-5]
51. sprn2 ENSDARG00000057665, ENSDARG00000115640 69 1.663 - - 0.775 0.888 - - - - - shadow of prion protein 2 [Source:ZFIN;Acc:ZDB-GENE-041221-1]
52. knop1 ENSDARG00000077721 2198 1.662 - - - - 0.833 - - 0.829 - lysine-rich nucleolar protein 1 [Source:ZFIN;Acc:ZDB-GENE-090313-76]
53. KEL ENSDARG00000076950 159 1.661 - - - - 0.946 - 0.715 - - Kell metallo-endopeptidase (Kell blood group) [Source:ZFIN;Acc:ZDB-GENE-110411-118]
54. zbtb20 ENSDARG00000005586 195 1.659 - - 0.718 - 0.941 - - - - zinc finger and BTB domain containing 20 [Source:ZFIN;Acc:ZDB-GENE-070112-1992]
55. trpa1b ENSDARG00000031875 39 1.654 0.865 - - - - 0.789 - - - transient receptor potential cation channel, subfamily A, member 1b [Source:ZFIN;Acc:ZDB-GENE-050106-1]
56. prmt1 ENSDARG00000010246 11311 1.65 - - - - - - - 0.880 0.770 protein arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-693]
57. ddx27 ENSDARG00000091831 1471 1.649 - - - - 0.900 - - 0.749 - DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Source:ZFIN;Acc:ZDB-GENE-031001-8]
58. foxg1b ENSDARG00000032705 354 1.644 - - - 0.708 - - - 0.936 - forkhead box G1b [Source:ZFIN;Acc:ZDB-GENE-040426-2437]
59. cpne2 ENSDARG00000007753 206 1.643 0.724 - - - 0.919 - - - - copine II [Source:ZFIN;Acc:ZDB-GENE-030131-7896]
60. CABZ01028287.1 CABZ01028287.1 626 1.64 - - - 0.751 - - - 0.889 -
61. tm2d3 ENSDARG00000076618 2310 1.639 - - - - 0.862 - - - 0.777 TM2 domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-070620-20]
62. pole ENSDARG00000058533, ENSDARG00000115430 381 1.637 - 0.862 - - - - - 0.775 - polymerase (DNA directed), epsilon [Source:ZFIN;Acc:ZDB-GENE-070705-557]
63. cdc42ep4a ENSDARG00000101457, ENSDARG00000114480 1226 1.637 - - - - 0.853 - - 0.784 - CDC42 effector protein (Rho GTPase binding) 4a [Source:ZFIN;Acc:ZDB-GENE-040704-22]
64. trappc6bl ENSDARG00000033171, ENSDARG00000111544 911 1.634 - 0.792 - - - - - 0.842 - trafficking protein particle complex 6b-like [Source:ZFIN;Acc:ZDB-GENE-040426-1602]
65. plekhj1 ENSDARG00000025593 696 1.633 - - - - 0.921 - - 0.712 - pleckstrin homology domain containing, family J member 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2480]
66. smim14 ENSDARG00000005799, ENSDARG00000110934 1094 1.633 - 0.752 - - 0.881 - - - - small integral membrane protein 14 [Source:ZFIN;Acc:ZDB-GENE-040426-22]
67. smc3 ENSDARG00000019000, ENSDARG00000112055 6553 1.629 - - - - - - - 0.875 0.754 structural maintenance of chromosomes 3 [Source:ZFIN;Acc:ZDB-GENE-030131-3196]
68. C1H4orf27 C1H4orf27 1961 1.625 - - - - 0.774 - - 0.851 -
69. DTX4 ENSDARG00000076302 2642 1.625 - - - - 0.822 - - - 0.803 deltex E3 ubiquitin ligase 4 [Source:HGNC Symbol;Acc:HGNC:29151]
70. sst6 ENSDARG00000093804, ENSDARG00000116656 31 1.623 - - - - - 0.735 0.888 - - somatostatin 6 [Source:ZFIN;Acc:ZDB-GENE-081022-199]
71. CU915738.1 CU915738.1 3723 1.622 - - - - 0.817 - - - 0.805
72. wu:fq41a10 wu:fq41a10 7009 1.614 - - - - 0.908 - - 0.706 -
73. ing4 ENSDARG00000030716 5908 1.611 - - - - 0.768 - - 0.843 - inhibitor of growth family, member 4 [Source:ZFIN;Acc:ZDB-GENE-050522-47]
74. fezf1 ENSDARG00000010270 379 1.611 - - 0.854 0.757 - - - - - FEZ family zinc finger 1 [Source:ZFIN;Acc:ZDB-GENE-060929-970]
75. gpx1a ENSDARG00000018146, ENSDARG00000114736 4652 1.609 - - - - 0.800 - - - 0.809 glutathione peroxidase 1a [Source:ZFIN;Acc:ZDB-GENE-030410-1]
76. BX511266.1 BX511266.1 21 1.597 - - - 0.808 - 0.789 - - -
77. btr16 ENSDARG00000028850 21 1.584 0.819 - - - - 0.765 - - - bloodthirsty-related gene family, member 16 [Source:ZFIN;Acc:ZDB-GENE-060929-1066]
78. esyt1b ENSDARG00000014239 8 1.583 0.865 - - - - - 0.718 - - extended synaptotagmin-like protein 1b [Source:ZFIN;Acc:ZDB-GENE-040724-209]
79. znf131 ENSDARG00000068400, ENSDARG00000110506 920 1.582 - - - - - 0.737 - 0.845 - zinc finger protein 131 [Source:ZFIN;Acc:ZDB-GENE-040426-1563]
80. ahdc1 ENSDARG00000093453 233 1.582 0.865 - - - - - 0.717 - - AT hook, DNA binding motif, containing 1 [Source:ZFIN;Acc:ZDB-GENE-060503-584]
81. sfrp5 ENSDARG00000039041 1777 1.581 - 0.839 0.742 - - - - - - secreted frizzled-related protein 5 [Source:ZFIN;Acc:ZDB-GENE-011108-2]
82. TTYH3 TTYH3 1841 1.579 - - - - 0.772 - - 0.807 -
83. kctd6a ENSDARG00000043095 480 1.579 - 0.762 - - - - - 0.817 - potassium channel tetramerization domain containing 6a [Source:ZFIN;Acc:ZDB-GENE-050208-474]
84. zgc:171531 zgc:171531 77 1.572 - - 0.854 0.718 - - - - -
85. cdc6 ENSDARG00000009942, ENSDARG00000109602 2540 1.572 - - - - 0.707 - - 0.865 - cell division cycle 6 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050506-131]
86. BX324132.5 BX324132.5 115 1.57 - - 0.814 0.756 - - - - -
87. noxo1a ENSDARG00000041294 440 1.564 - 0.863 - - - 0.701 - - - NADPH oxidase organizer 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9700]
88. cyp26b1 ENSDARG00000077121 1364 1.562 - - - 0.788 - - 0.774 - - cytochrome P450, family 26, subfamily b, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2908]
89. si:dkey-235h8.1 si:dkey-235h8.1 2457 1.562 - - 0.828 - - - - 0.734 -
90. dlx1a ENSDARG00000013125 142 1.557 - - 0.806 0.751 - - - - - distal-less homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-990415-48]
91. sart1 ENSDARG00000005945 1832 1.556 - - - - 0.831 - - 0.725 - SART1, U4/U6.U5 tri-snRNP-associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-040718-422]
92. anxa13 ENSDARG00000013976 2476 1.555 - 0.818 - - 0.737 - - - - annexin A13 [Source:ZFIN;Acc:ZDB-GENE-010406-1]
93. speg speg 334 1.55 - - - - - - 0.733 0.817 -
94. MYO1D ENSDARG00000036863 768 1.535 - 0.756 - - - - - 0.779 - myosin ID [Source:HGNC Symbol;Acc:HGNC:7598]
95. uso1 ENSDARG00000019581 479 1.53 - 0.714 - - - - - 0.816 - USO1 vesicle transport factor [Source:ZFIN;Acc:ZDB-GENE-040426-688]
96. zswim5 ENSDARG00000055900 4243 1.524 - - - - 0.722 - - 0.802 - zinc finger, SWIM-type containing 5 [Source:ZFIN;Acc:ZDB-GENE-030925-30]
97. her2 ENSDARG00000038205 3219 1.49 - - - - 0.775 - - 0.715 - hairy-related 2 [Source:ZFIN;Acc:ZDB-GENE-980526-274]
98. her15.2 her15.2 1701 1.488 - - - - 0.774 - - 0.714 -
99. asb4 ENSDARG00000034988 1115 1.468 0.750 - - - - - 0.718 - - ankyrin repeat and SOCS box containing 4 [Source:ZFIN;Acc:ZDB-GENE-050417-100]
100. islr2 ENSDARG00000051875, ENSDARG00000109523 2288 1.459 - - 0.726 0.733 - - - - - immunoglobulin superfamily containing leucine-rich repeat 2 [Source:ZFIN;Acc:ZDB-GENE-050320-95]

There are 2149 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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