Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for six1a

Gene Name Gene ID Reads Annotation
six1a ENSDARG00000039304 1183 SIX homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-040718-155]










Genes with expression patterns similar to six1a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. six1a ENSDARG00000039304 1183 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SIX homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-040718-155]
2. usp5_1 ENSDARG00000014517, ENSDARG00000114598 5050 3.162 0.724 0.881 - - - 0.768 0.789 - - ubiquitin specific peptidase 5 (isopeptidase T) [Source:ZFIN;Acc:ZDB-GENE-040426-2584]
3. trdn ENSDARG00000041779 4283 3.087 0.778 0.830 - - - 0.755 0.724 - - triadin [Source:ZFIN;Acc:ZDB-GENE-041014-193]
4. sptb ENSDARG00000030490 7128 3.069 0.736 0.873 - - - 0.756 0.704 - - spectrin, beta, erythrocytic [Source:ZFIN;Acc:ZDB-GENE-000906-1]
5. fitm1 ENSDARG00000056464 1759 2.53 - 0.884 - - - 0.907 0.739 - - fat storage-inducing transmembrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-050306-28]
6. mef2aa ENSDARG00000031756 2699 2.47 - 0.906 - - - 0.824 0.740 - - myocyte enhancer factor 2aa [Source:ZFIN;Acc:ZDB-GENE-990415-163]
7. fxr2 ENSDARG00000016260, ENSDARG00000116730 10030 2.426 0.713 - - - - 0.873 0.840 - - fragile X mental retardation, autosomal homolog 2 [Source:ZFIN;Acc:ZDB-GENE-040426-943]
8. jph1a ENSDARG00000058603 2852 2.41 - 0.795 - - - 0.844 0.771 - - junctophilin 1a [Source:ZFIN;Acc:ZDB-GENE-040724-233]
9. dmd ENSDARG00000008487, ENSDARG00000115779 536 2.408 0.774 0.852 - 0.782 - - - - - dystrophin [Source:ZFIN;Acc:ZDB-GENE-010426-1]
10. ryr3 ENSDARG00000071331 6795 2.404 - 0.856 - - - 0.771 0.777 - - ryanodine receptor 3 [Source:ZFIN;Acc:ZDB-GENE-041001-165]
11. ptrfa ptrfa 4363 2.403 0.791 0.825 - - - 0.787 - - -
12. mafa ENSDARG00000015890 2140 2.385 0.734 - - - - 0.753 0.898 - - v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog a (paralog a) [Source:ZFIN;Acc:ZDB-GENE-010605-2]
13. stac3 ENSDARG00000098883 1765 2.376 - 0.817 - - - 0.784 0.775 - - SH3 and cysteine rich domain 3 [Source:ZFIN;Acc:ZDB-GENE-040801-248]
14. MYOM3 2720 2.367 - 0.930 - - - 0.713 0.724 - - myomesin 3, transcript variant X2
15. klhl40a ENSDARG00000039052 2537 2.357 - 0.878 - - - 0.708 0.771 - - kelch-like family member 40a [Source:ZFIN;Acc:ZDB-GENE-050916-1]
16. myoz2a ENSDARG00000012311 1373 2.351 - 0.916 - - - 0.708 0.727 - - myozenin 2a [Source:ZFIN;Acc:ZDB-GENE-040426-1880]
17. C13H10orf71 3489 2.326 0.701 0.910 - - - - 0.715 - - chromosome 13 C10orf71 homolog
18. pbxip1a ENSDARG00000071015 4960 2.32 0.733 0.822 - - - - 0.765 - - pre-B-cell leukemia homeobox interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-060503-871]
19. CU638714.1 ENSDARG00000100303 2132 2.316 0.701 0.866 - - - - 0.749 - -
20. smarcd3a ENSDARG00000038786 2894 2.307 - 0.803 - - - 0.771 0.733 - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3a [Source:ZFIN;Acc:ZDB-GENE-070912-491]
21. mlf1 ENSDARG00000077301 789 2.305 - 0.791 - - - 0.788 0.726 - - myeloid leukemia factor 1 [Source:ZFIN;Acc:ZDB-GENE-080917-7]
22. EHBP1L1 EHBP1L1 2500 2.304 - 0.793 - - - 0.787 0.724 - -
23. MYOM1 MYOM1 3870 2.302 0.758 0.827 - - - - 0.717 - -
24. kcnma1a ENSDARG00000079840 2584 2.301 - 0.793 - - - 0.787 0.721 - - potassium large conductance calcium-activated channel, subfamily M, alpha member 1a [Source:ZFIN;Acc:ZDB-GENE-070202-9]
25. cspg4 ENSDARG00000078227 1084 2.301 0.720 0.836 - - - 0.745 - - - chondroitin sulfate proteoglycan 4 [Source:ZFIN;Acc:ZDB-GENE-050519-1]
26. akap6 ENSDARG00000077295 1382 2.3 0.715 0.844 - - - - 0.741 - - A kinase (PRKA) anchor protein 6 [Source:ZFIN;Acc:ZDB-GENE-120207-2]
27. usp28 ENSDARG00000008880 1850 2.287 0.712 0.789 - - - - 0.786 - - ubiquitin specific peptidase 28 [Source:ZFIN;Acc:ZDB-GENE-041008-142]
28. NRAP ENSDARG00000009341 3565 2.283 0.722 0.806 - - - 0.755 - - - nebulin-related anchoring protein [Source:ZFIN;Acc:ZDB-GENE-060616-224]
29. six4b ENSDARG00000031983 265 2.278 0.727 0.734 - - - 0.817 - - - SIX homeobox 4b [Source:ZFIN;Acc:ZDB-GENE-010201-1]
30. xirp2a ENSDARG00000071113 7113 2.273 0.713 0.829 - - - 0.731 - - - xin actin binding repeat containing 2a [Source:ZFIN;Acc:ZDB-GENE-040108-7]
31. kcnj11 ENSDARG00000051880, ENSDARG00000114565 211 2.269 0.737 0.778 - - - 0.754 - - - potassium inwardly-rectifying channel, subfamily J, member 11 [Source:ZFIN;Acc:ZDB-GENE-060308-2]
32. enpp5 ENSDARG00000070625 550 2.26 - 0.757 - 0.793 - - 0.710 - - ectonucleotide pyrophosphatase/phosphodiesterase 5 [Source:ZFIN;Acc:ZDB-GENE-041014-10]
33. chrnd ENSDARG00000019342 2728 2.247 0.728 0.805 - - - - 0.714 - - cholinergic receptor, nicotinic, delta (muscle) [Source:ZFIN;Acc:ZDB-GENE-030131-6665]
34. TRIM63 TRIM63 1600 2.239 - 0.775 - - - 0.702 0.762 - -
35. prx ENSDARG00000017246 6183 2.238 0.717 0.767 - - - - 0.754 - - periaxin [Source:ZFIN;Acc:ZDB-GENE-030131-5790]
36. zgc:153662 zgc:153662 4604 2.22 0.781 0.731 - - - - 0.708 - -
37. klhl41b ENSDARG00000006757 10762 2.197 0.721 - - - - 0.743 0.733 - - kelch-like family member 41b [Source:ZFIN;Acc:ZDB-GENE-030131-9875]
38. COL22A1 COL22A1 4473 2.184 0.725 0.702 - - - - 0.757 - -
39. tnnt2d ENSDARG00000002988 7590 2.182 0.727 0.739 - - - - 0.716 - - troponin T2d, cardiac [Source:ZFIN;Acc:ZDB-GENE-050626-97]
40. FRMD5 ENSDARG00000075942 569 2.164 - 0.710 - - - 0.716 0.738 - - FERM domain containing 5 [Source:HGNC Symbol;Acc:HGNC:28214]
41. alpk2 ENSDARG00000079637 1483 1.785 - 0.856 - - - 0.929 - - - alpha-kinase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1868]
42. cfl2 ENSDARG00000014106 8051 1.749 - 0.955 - - - - 0.794 - - cofilin 2 (muscle) [Source:ZFIN;Acc:ZDB-GENE-040426-1815]
43. ryr1b ENSDARG00000023797 5693 1.714 - 0.899 - - - - 0.815 - - ryanodine receptor 1b (skeletal) [Source:ZFIN;Acc:ZDB-GENE-070705-417]
44. cacng1 cacng1 3118 1.712 0.757 0.955 - - - - - - -
45. txlnbb ENSDARG00000076241 6396 1.706 - 0.856 - - - 0.850 - - - taxilin beta b [Source:ZFIN;Acc:ZDB-GENE-070424-77]
46. six1b ENSDARG00000026473 1908 1.7 - 0.950 - - - - 0.750 - - SIX homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2308]
47. mybphb ENSDARG00000003081 5208 1.69 - 0.906 - - - - 0.784 - - myosin binding protein Hb [Source:ZFIN;Acc:ZDB-GENE-030131-9794]
48. lnpa ENSDARG00000063646, ENSDARG00000115902 2373 1.686 - 0.921 - - - - 0.765 - - limb and neural patterns a [Source:ZFIN;Acc:ZDB-GENE-030131-4960]
49. atp1a2a ENSDARG00000010472, ENSDARG00000111818, ENSDARG00000115733 6341 1.686 - 0.842 - - - - 0.844 - - ATPase Na+/K+ transporting subunit alpha 2 [Source:ZFIN;Acc:ZDB-GENE-001212-6]
50. plecb ENSDARG00000021987 13621 1.669 0.758 0.911 - - - - - - - plectin b [Source:ZFIN;Acc:ZDB-GENE-100917-2]
51. MYOT ENSDARG00000076312 1791 1.658 - 0.854 - - - - 0.804 - - myotilin [Source:ZFIN;Acc:ZDB-GENE-110411-129]
52. FHOD3_1 FHOD3_1 983 1.658 - 0.846 - - - - 0.812 - -
53. synpo2lb ENSDARG00000078696 2361 1.652 - - - - - 0.787 0.865 - - synaptopodin 2-like b [Source:ZFIN;Acc:ZDB-GENE-090828-5]
54. znf106a ENSDARG00000016651 6049 1.648 - 0.871 - - - - 0.777 - - zinc finger protein 106a [Source:ZFIN;Acc:ZDB-GENE-040718-21]
55. srpk3 ENSDARG00000005916 1546 1.647 - 0.835 - - - - 0.812 - - SRSF protein kinase 3 [Source:ZFIN;Acc:ZDB-GENE-101025-2]
56. casq1a ENSDARG00000038716, ENSDARG00000116662 6300 1.645 - 0.825 - - - 0.820 - - - calsequestrin 1a [Source:ZFIN;Acc:ZDB-GENE-040801-139]
57. cacna1sa ENSDARG00000029457 883 1.645 0.818 - - - - - 0.827 - - calcium channel, voltage-dependent, L type, alpha 1S subunit, a [Source:ZFIN;Acc:ZDB-GENE-090514-1]
58. prex1 ENSDARG00000075793 1017 1.642 - 0.776 - - - 0.866 - - - phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1428]
59. mcamb ENSDARG00000005368 1660 1.642 - 0.878 - - - 0.764 - - - melanoma cell adhesion molecule b [Source:ZFIN;Acc:ZDB-GENE-030219-213]
60. asb5b ENSDARG00000053222 1207 1.641 - 0.747 - - - 0.894 - - - ankyrin repeat and SOCS box containing 5b [Source:ZFIN;Acc:ZDB-GENE-050417-271]
61. klhl21 ENSDARG00000039255 2550 1.64 - 0.918 - - - - 0.722 - - kelch-like family member 21 [Source:ZFIN;Acc:ZDB-GENE-040426-2627]
62. srl ENSDARG00000104587 11126 1.64 - 0.885 - - - - 0.755 - - sarcalumenin [Source:ZFIN;Acc:ZDB-GENE-061110-91]
63. si:dkey-71b5.7 ENSDARG00000080675 94 1.64 - - - 0.916 - 0.724 - - - si:dkey-71b5.7 [Source:ZFIN;Acc:ZDB-GENE-100922-124]
64. musk ENSDARG00000098764 438 1.638 - 0.868 - - - 0.770 - - - muscle, skeletal, receptor tyrosine kinase [Source:ZFIN;Acc:ZDB-GENE-030131-6458]
65. cmya5 ENSDARG00000061379 1423 1.638 0.833 0.805 - - - - - - - cardiomyopathy associated 5 [Source:ZFIN;Acc:ZDB-GENE-070630-1]
66. smyd1b ENSDARG00000091253 4964 1.635 - 0.865 - - - 0.770 - - - SET and MYND domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-060522-1]
67. fstb ENSDARG00000057992, ENSDARG00000110082 518 1.633 0.792 0.841 - - - - - - - follistatin b [Source:ZFIN;Acc:ZDB-GENE-031118-139]
68. lamb2 ENSDARG00000002084 3265 1.633 0.808 0.825 - - - - - - - laminin, beta 2 (laminin S) [Source:ZFIN;Acc:ZDB-GENE-081030-4]
69. hapln1a ENSDARG00000089769 12334 1.63 0.709 0.921 - - - - - - - hyaluronan and proteoglycan link protein 1a [Source:ZFIN;Acc:ZDB-GENE-050302-175]
70. pygmb ENSDARG00000013317 5454 1.627 - 0.801 - - - - 0.826 - - phosphorylase, glycogen, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-1206]
71. obsl1b ENSDARG00000077388 2511 1.626 - 0.802 - - - 0.824 - - - obscurin-like 1b [Source:ZFIN;Acc:ZDB-GENE-050809-29]
72. zgc:158296 ENSDARG00000070923 3935 1.626 - 0.771 - - - 0.855 - - - zgc:158296 [Source:ZFIN;Acc:ZDB-GENE-070112-1272]
73. cand2 ENSDARG00000005749, ENSDARG00000109268, ENSDARG00000112192 356 1.624 - 0.879 - - - 0.745 - - - cullin-associated and neddylation-dissociated 2 (putative) [Source:ZFIN;Acc:ZDB-GENE-060503-645]
74. DNAJA4 ENSDARG00000051762 5657 1.623 - 0.861 - - - - 0.762 - - DnaJ heat shock protein family (Hsp40) member A4 [Source:HGNC Symbol;Acc:HGNC:14885]
75. ppm1la ENSDARG00000063218 2142 1.618 - 0.911 - - - - 0.707 - - protein phosphatase, Mg2+/Mn2+ dependent, 1La [Source:ZFIN;Acc:ZDB-GENE-061103-118]
76. rp42-pen rp42-pen 3395 1.618 - 0.886 - - - 0.732 - - -
77. si:dkey-258f14.2 ENSDARG00000094874 297 1.617 0.830 0.787 - - - - - - - si:dkey-258f14.2 [Source:ZFIN;Acc:ZDB-GENE-081104-395]
78. arxa ENSDARG00000058011 440 1.617 0.716 0.901 - - - - - - - aristaless related homeobox a [Source:ZFIN;Acc:ZDB-GENE-990415-15]
79. ywhag2 ENSDARG00000071658, ENSDARG00000116741 3326 1.615 - 0.796 - - - - 0.819 - - 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-061023-2]
80. fam212aa 1132 1.614 0.817 - - - - 0.797 - - - family with sequence similarity 212, member Aa, transcript variant X1
81. enah ENSDARG00000032049 1526 1.612 - 0.785 - - - - 0.827 - - enabled homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010323-11]
82. trim101 ENSDARG00000018264 827 1.61 - 0.755 - - - 0.855 - - - tripartite motif containing 101 [Source:ZFIN;Acc:ZDB-GENE-040801-100]
83. chrna1 ENSDARG00000009021 2931 1.609 - 0.890 - - - - 0.719 - - cholinergic receptor, nicotinic, alpha 1 (muscle) [Source:ZFIN;Acc:ZDB-GENE-980526-137]
84. lrrc20 ENSDARG00000105018 1970 1.606 - 0.851 - - - - 0.755 - - leucine rich repeat containing 20 [Source:ZFIN;Acc:ZDB-GENE-041114-49]
85. dyrk2 ENSDARG00000094646 2163 1.601 - 0.861 - - - - 0.740 - - dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2804]
86. reep1 ENSDARG00000014854 915 1.6 - 0.814 - - - - 0.786 - - receptor accessory protein 1 [Source:ZFIN;Acc:ZDB-GENE-110411-267]
87. TMPO TMPO 3264 1.595 - 0.821 - - - - 0.774 - -
88. tmem47 ENSDARG00000057322 4691 1.594 - 0.782 - - - - 0.812 - - transmembrane protein 47 [Source:ZFIN;Acc:ZDB-GENE-040426-2644]
89. ptprua ENSDARG00000092638 479 1.594 0.739 0.855 - - - - - - - protein tyrosine phosphatase, receptor type, U, a [Source:ZFIN;Acc:ZDB-GENE-060503-232]
90. CR847973.1 ENSDARG00000115516 8754 1.593 - 0.766 - - - - 0.827 - -
91. nmrk2 ENSDARG00000067848 10293 1.593 - 0.858 - - - - 0.735 - - nicotinamide riboside kinase 2 [Source:ZFIN;Acc:ZDB-GENE-040912-44]
92. tprg1l ENSDARG00000068149 1605 1.591 - - - 0.810 - - 0.781 - - tumor protein p63 regulated 1-like [Source:ZFIN;Acc:ZDB-GENE-070531-2]
93. BX294434.1 ENSDARG00000061272 6493 1.591 0.704 0.887 - - - - - - - solute carrier family 41 member 1 [Source:NCBI gene;Acc:564564]
94. zgc:113363 ENSDARG00000101206 474 1.59 0.796 0.794 - - - - - - - zgc:113363 [Source:ZFIN;Acc:ZDB-GENE-050327-7]
95. pdlim3b ENSDARG00000014248, ENSDARG00000111275 708 1.585 - 0.857 - 0.728 - - - - - PDZ and LIM domain 3b [Source:ZFIN;Acc:ZDB-GENE-060130-104]
96. mef2d ENSDARG00000040237 6144 1.584 - 0.863 - - - 0.721 - - - myocyte enhancer factor 2d [Source:ZFIN;Acc:ZDB-GENE-990415-164]
97. slc37a4b ENSDARG00000077180, ENSDARG00000093531 565 1.583 - 0.783 - - - - 0.800 - - solute carrier family 37 (glucose-6-phosphate transporter), member 4b [Source:ZFIN;Acc:ZDB-GENE-040426-827]
98. atxn7l2b ENSDARG00000056268 226 1.58 - 0.741 - - - - 0.839 - - ataxin 7-like 2b [Source:ZFIN;Acc:ZDB-GENE-040718-403]
99. zgc:86609 ENSDARG00000029479 923 1.579 - 0.850 - - - 0.729 - - - zgc:86609 [Source:ZFIN;Acc:ZDB-GENE-050102-7]
100. bag3 ENSDARG00000039486 1087 1.577 - 0.871 - - - 0.706 - - - BCL2 associated athanogene 3 [Source:ZFIN;Acc:ZDB-GENE-040801-40]

There are 1406 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA