Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for sim1a

Gene Name Gene ID Reads Annotation
sim1a ENSDARG00000023316 190 SIM bHLH transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-020829-1]










Genes with expression patterns similar to sim1a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. sim1a ENSDARG00000023316 190 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SIM bHLH transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-020829-1]
2. ncf1 ENSDARG00000033735 83 1.71 - 0.879 - - - - - 0.831 - neutrophil cytosolic factor 1 [Source:ZFIN;Acc:ZDB-GENE-031006-6]
3. pcdh2g12 5 1.682 0.803 0.879 - - - - - - - protocadherin 2 gamma 12
4. zp3b ENSDARG00000039828 15 1.671 - 0.879 - - - - 0.792 - - zona pellucida glycoprotein 3b [Source:ZFIN;Acc:ZDB-GENE-031124-2]
5. jmjd7 ENSDARG00000035546 222 1.646 0.829 - - - - - - 0.817 - jumonji domain containing 7 [Source:ZFIN;Acc:ZDB-GENE-050417-86]
6. epha6 ENSDARG00000022971 52 1.645 0.768 - - - - - - 0.877 - eph receptor A6 [Source:ZFIN;Acc:ZDB-GENE-090311-43]
7. si:ch211-191d2.2 ENSDARG00000090836 316 1.639 - - - - - - 0.829 0.810 - si:ch211-191d2.2 [Source:ZFIN;Acc:ZDB-GENE-110407-3]
8. gnl2 ENSDARG00000098080 565 1.639 - - - - - 0.849 - 0.790 - guanine nucleotide binding protein-like 2 (nucleolar) [Source:ZFIN;Acc:ZDB-GENE-040426-2317]
9. baiap2a ENSDARG00000062799 231 1.607 - - - - - - 0.751 0.856 - BAI1-associated protein 2a [Source:ZFIN;Acc:ZDB-GENE-060421-2756]
10. NAT14 ENSDARG00000115349 21 1.598 0.803 0.795 - - - - - - - N-acetyltransferase 14 (GCN5-related, putative) [Source:ZFIN;Acc:ZDB-GENE-060825-15]
11. eif4e1b ENSDARG00000014565 12 1.597 0.718 0.879 - - - - - - - eukaryotic translation initiation factor 4E family member 1B [Source:ZFIN;Acc:ZDB-GENE-980526-127]
12. spata17 ENSDARG00000054414 64 1.58 - - - - - 0.705 - 0.875 - spermatogenesis associated 17 [Source:ZFIN;Acc:ZDB-GENE-111214-1]
13. TRIM14_1 TRIM14_1 228 1.58 - 0.798 - - - - - 0.782 -
14. rabl3 ENSDARG00000040959 271 1.569 - - - - - 0.744 - 0.825 - RAB, member of RAS oncogene family-like 3 [Source:ZFIN;Acc:ZDB-GENE-040808-11]
15. scn4ab ENSDARG00000034588 109 1.557 - 0.820 - - - - 0.737 - - sodium channel, voltage-gated, type IV, alpha, b [Source:ZFIN;Acc:ZDB-GENE-051201-1]
16. grwd1 ENSDARG00000004806, ENSDARG00000109608 1567 1.555 - 0.757 - - - - - 0.798 - glutamate-rich WD repeat containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9844]
17. zgc:92630 ENSDARG00000004141, ENSDARG00000113420 147 1.553 0.764 - - - - - - 0.789 - zgc:92630 [Source:ZFIN;Acc:ZDB-GENE-040718-449]
18. d2hgdh ENSDARG00000060210 362 1.521 - 0.817 - - - 0.704 - - - D-2-hydroxyglutarate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-070112-482]
19. NUDT7 ENSDARG00000070387 32 1.508 - 0.755 - - - - 0.753 - - nudix (nucleoside diphosphate linked moiety X)-type motif 7 [Source:ZFIN;Acc:ZDB-GENE-131127-212]
20. rxrga ENSDARG00000005593 342 1.507 - 0.726 - - - - - 0.781 - retinoid x receptor, gamma a [Source:ZFIN;Acc:ZDB-GENE-980526-36]
21. CABZ01075125.1 ENSDARG00000102972 436 1.507 - 0.794 - - - - - 0.713 -
22. adrb3a ENSDARG00000053646 354 1.5 0.741 - - - - - - 0.759 - adrenoceptor beta 3a [Source:ZFIN;Acc:ZDB-GENE-080917-21]
23. timm50 ENSDARG00000031098, ENSDARG00000109900 988 1.497 0.725 - - - - - - 0.772 - translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040426-1618]
24. HAUS2 HAUS2 392 1.476 - 0.714 - - - - - 0.762 -
25. SUSD3 SUSD3 64 1.47 0.761 0.709 - - - - - - -
26. si:dkey-239h2.3 ENSDARG00000092033 398 0.919 - - - - - - - 0.919 - si:dkey-239h2.3 [Source:ZFIN;Acc:ZDB-GENE-081104-383]
27. CLDND1 CLDND1 155 0.919 - - - - - - - 0.919 -
28. bicc2 ENSDARG00000076557 77 0.906 - - - - - - - 0.906 - bicaudal C homolog 2 [Source:ZFIN;Acc:ZDB-GENE-110110-3]
29. knstrn ENSDARG00000074379 374 0.905 - - - - - - 0.905 - - kinetochore localized astrin (SPAG5) binding protein [Source:ZFIN;Acc:ZDB-GENE-081022-187]
30. arl14 ENSDARG00000063223 211 0.904 - 0.904 - - - - - - - ADP-ribosylation factor-like 14 [Source:ZFIN;Acc:ZDB-GENE-070705-288]
31. grm7p grm7p 225 0.904 - 0.904 - - - - - - -
32. dusp3a ENSDARG00000061255, ENSDARG00000113934 328 0.903 - - - - - - - 0.903 - dual specificity phosphatase 3a [Source:ZFIN;Acc:ZDB-GENE-111207-3]
33. lrp11 ENSDARG00000034076 313 0.898 - 0.898 - - - - - - - low density lipoprotein receptor-related protein 11 [Source:ZFIN;Acc:ZDB-GENE-030131-7847]
34. hcrtr2 ENSDARG00000023722 70 0.897 - - - - - - - 0.897 - hypocretin (orexin) receptor 2 [Source:ZFIN;Acc:ZDB-GENE-070228-3]
35. glis3 ENSDARG00000069726 59 0.897 - 0.897 - - - - - - - GLIS family zinc finger 3 [Source:ZFIN;Acc:ZDB-GENE-070112-2232]
36. dis3l2 ENSDARG00000033259 1509 0.896 - - - - - - - 0.896 - DIS3 like 3'-5' exoribonuclease 2 [Source:ZFIN;Acc:ZDB-GENE-070705-171]
37. lmbrd2a ENSDARG00000099566 15 0.896 - 0.896 - - - - - - - LMBR1 domain containing 2a [Source:ZFIN;Acc:ZDB-GENE-050417-32]
38. sfrp1a ENSDARG00000035521 318 0.895 - - - - - - 0.895 - - secreted frizzled-related protein 1a [Source:ZFIN;Acc:ZDB-GENE-040310-5]
39. si:ch73-257c13.2 ENSDARG00000074305 197 0.894 - - - - - - - 0.894 - si:ch73-257c13.2 [Source:ZFIN;Acc:ZDB-GENE-081104-269]
40. CNOT6 CNOT6 168 0.893 - 0.893 - - - - - - -
41. PARP6_1 PARP6_1 331 0.892 - 0.892 - - - - - - -
42. lig4 ENSDARG00000060620 369 0.891 - 0.891 - - - - - - - ligase IV, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-070820-10]
43. zgc:101130 ENSDARG00000101926 924 0.891 - - - - - - - 0.891 - zgc:101130 [Source:ZFIN;Acc:ZDB-GENE-040801-72]
44. HMGXB4_1 HMGXB4_1 1122 0.889 - - - - - - - 0.889 -
45. si:dkey-175g6.2 ENSDARG00000086665 39 0.889 - - - - - - - 0.889 - si:dkey-175g6.2 [Source:ZFIN;Acc:ZDB-GENE-030131-8061]
46. VPRBP VPRBP 727 0.889 - - - - - - - 0.889 -
47. mid1 ENSDARG00000060482 154 0.889 - 0.889 - - - - - - - midline 1 [Source:ZFIN;Acc:ZDB-GENE-110411-205]
48. si:ch211-64c10.1 si:ch211-64c10.1 21 0.888 - - - - - - - 0.888 -
49. kcnk13a ENSDARG00000008212 136 0.888 - - - - - - - 0.888 - potassium channel, subfamily K, member 13a [Source:ZFIN;Acc:ZDB-GENE-080219-46]
50. nup133 ENSDARG00000010078 2373 0.887 - - - - - - - 0.887 - nucleoporin 133 [Source:ZFIN;Acc:ZDB-GENE-040426-2941]
51. CABZ01044943.1 CABZ01044943.1 309 0.886 - 0.886 - - - - - - -
52. RAPGEF4 ENSDARG00000079872 82 0.885 - - - - - - - 0.885 - Rap guanine nucleotide exchange factor (GEF) 4 [Source:ZFIN;Acc:ZDB-GENE-070912-385]
53. dab2ipb ENSDARG00000075110, ENSDARG00000117186 414 0.885 - - - - - - - 0.885 - DAB2 interacting protein b [Source:ZFIN;Acc:ZDB-GENE-030131-2449]
54. gpr37l1a ENSDARG00000006079 422 0.885 - 0.885 - - - - - - - G protein-coupled receptor 37 like 1a [Source:ZFIN;Acc:ZDB-GENE-110411-20]
55. c1ql3a ENSDARG00000010350 179 0.884 - 0.884 - - - - - - - complement component 1, q subcomponent-like 3a [Source:ZFIN;Acc:ZDB-GENE-080417-1]
56. si:ch211-71k14.1 ENSDARG00000087061 48 0.884 - - - - - - - 0.884 - si:ch211-71k14.1 [Source:ZFIN;Acc:ZDB-GENE-110411-283]
57. trmt44 ENSDARG00000033957 133 0.884 - 0.884 - - - - - - - tRNA methyltransferase 44 homolog [Source:ZFIN;Acc:ZDB-GENE-041010-189]
58. KLHL14 ENSDARG00000045275 155 0.882 - 0.882 - - - - - - - kelch-like family member 14 [Source:ZFIN;Acc:ZDB-GENE-091204-223]
59. zgc:165515 ENSDARG00000116300 182 0.882 - - - - - - - 0.882 - zgc:165515 [Source:ZFIN;Acc:ZDB-GENE-030131-1772]
60. tfb1m ENSDARG00000040727 142 0.881 - - - - - - - 0.881 - transcription factor B1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-060929-1010]
61. zdhhc7 ENSDARG00000019484 160 0.88 - 0.880 - - - - - - - zinc finger, DHHC-type containing 7 [Source:ZFIN;Acc:ZDB-GENE-040718-346]
62. GRIK5 ENSDARG00000101449, ENSDARG00000111384 43 0.88 - - - - - - - 0.880 - glutamate receptor, ionotropic, kainate 5 [Source:ZFIN;Acc:ZDB-GENE-070821-6]
63. ociad2 ENSDARG00000052336 102 0.879 - 0.879 - - - - - - - OCIA domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-041014-253]
64. ANXA9 ANXA9 74 0.879 - 0.879 - - - - - - -
65. LRRC52 ENSDARG00000090698 1 0.879 - 0.879 - - - - - - - leucine rich repeat containing 52 [Source:HGNC Symbol;Acc:HGNC:32156]
66. CU571315.2 ENSDARG00000101956 15 0.879 - 0.879 - - - - - - -
67. CU463316.1 CU463316.1 1 0.879 - 0.879 - - - - - - -
68. skor1a ENSDARG00000069030 19 0.879 - 0.879 - - - - - - - SKI family transcriptional corepressor 1a [Source:ZFIN;Acc:ZDB-GENE-080722-5]
69. cacna1aa ENSDARG00000037905 4 0.879 - 0.879 - - - - - - - calcium channel, voltage-dependent, P/Q type, alpha 1A subunit, a [Source:ZFIN;Acc:ZDB-GENE-040724-26]
70. fgf12a ENSDARG00000027957 143 0.879 - 0.879 - - - - - - - fibroblast growth factor 12a [Source:ZFIN;Acc:ZDB-GENE-050221-6]
71. rca2.2 ENSDARG00000095512 13 0.879 - - - - - - - 0.879 - regulator of complement activation group 2 gene 2 [Source:ZFIN;Acc:ZDB-GENE-060503-646]
72. si:dkey-236a14.12 si:dkey-236a14.12 3 0.879 - 0.879 - - - - - - -
73. zbtb24 ENSDARG00000075533, ENSDARG00000114487 12 0.879 - 0.879 - - - - - - - zinc finger and BTB domain containing 24 [Source:ZFIN;Acc:ZDB-GENE-081022-123]
74. pla1a ENSDARG00000102176, ENSDARG00000109274 29 0.879 - 0.879 - - - - - - - phospholipase A1 member A [Source:ZFIN;Acc:ZDB-GENE-030131-5949]
75. klc4_1 ENSDARG00000086985 22 0.879 - 0.879 - - - - - - - kinesin light chain 4 [Source:ZFIN;Acc:ZDB-GENE-050417-350]
76. FNBP1_1 FNBP1_1 3 0.879 - 0.879 - - - - - - -
77. ELFN1 ELFN1 59 0.879 - - - - - - - 0.879 -
78. PPP2R2A PPP2R2A 50 0.879 - 0.879 - - - - - - -
79. BX539307.1 ENSDARG00000071588 2 0.879 - 0.879 - - - - - - -
80. themis ENSDARG00000010619 5 0.879 - 0.879 - - - - - - - thymocyte selection associated [Source:ZFIN;Acc:ZDB-GENE-041008-160]
81. si:dkey-84h14.3 si:dkey-84h14.3 3 0.879 - 0.879 - - - - - - -
82. CABZ01034707.1 CABZ01034707.1 122 0.879 - 0.879 - - - - - - -
83. kl ENSDARG00000079862 13 0.879 - - - - - - - 0.879 - klotho [Source:ZFIN;Acc:ZDB-GENE-110221-1]
84. FAM163A_1 ENSDARG00000093021 6 0.879 - 0.879 - - - - - - - family with sequence similarity 163 member A [Source:HGNC Symbol;Acc:HGNC:28274]
85. si:dkeyp-4f2.3 ENSDARG00000096011, ENSDARG00000104584 5 0.879 - 0.879 - - - - - - - si:dkeyp-4f2.3 [Source:ZFIN;Acc:ZDB-GENE-110914-117]
86. cdh4_1 ENSDARG00000015002, ENSDARG00000110803, ENSDARG00000110870 13 0.879 - 0.879 - - - - - - - cadherin 4, type 1, R-cadherin (retinal) [Source:ZFIN;Acc:ZDB-GENE-991207-1]
87. si:dkey-17e16.18 47 0.879 - 0.879 - - - - - - - si:dkey-17e16.18
88. trim35-38 trim35-38 3 0.879 - 0.879 - - - - - - -
89. si:dkey-4c23.3 ENSDARG00000092028, ENSDARG00000110418 4 0.879 - 0.879 - - - - - - - si:dkey-4c23.3 [Source:ZFIN;Acc:ZDB-GENE-050208-668]
90. Metazoa_SRP_25 Metazoa_SRP_25 13 0.879 - 0.879 - - - - - - -
91. si:dkey-270m17.3 si:dkey-270m17.3 1 0.879 - 0.879 - - - - - - -
92. snai3 ENSDARG00000031243 31 0.879 - 0.879 - - - - - - - snail family zinc finger 3 [Source:ZFIN;Acc:ZDB-GENE-061013-757]
93. CT027623.1 ENSDARG00000094538 13 0.879 - - - - - - - 0.879 - si:dkey-65l23.1 [Source:NCBI gene;Acc:101885466]
94. CR848836.4 CR848836.4 4 0.879 - 0.879 - - - - - - -
95. CR382327.4 CR382327.4 143 0.879 - 0.879 - - - - - - -
96. cpa2 ENSDARG00000010146 28 0.879 - - - - - - - 0.879 - carboxypeptidase A2 (pancreatic) [Source:ZFIN;Acc:ZDB-GENE-040801-182]
97. crybb2 ENSDARG00000053512 15 0.879 - - - - - - - 0.879 - crystallin, beta B2 [Source:ZFIN;Acc:ZDB-GENE-060130-1]
98. si:dkey-266h18.3 si:dkey-266h18.3 4 0.879 - 0.879 - - - - - - -
99. si:ch73-44m9.2 ENSDARG00000094821 101 0.879 - 0.879 - - - - - - - si:ch73-44m9.2 [Source:ZFIN;Acc:ZDB-GENE-081031-72]
100. fam167aa ENSDARG00000067665, ENSDARG00000112798 13 0.879 - 0.879 - - - - - - - family with sequence similarity 167, member Aa [Source:ZFIN;Acc:ZDB-GENE-061013-209]

There are 955 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA