Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for si:dkey-238m4.4

Gene Name Gene ID Reads Annotation
si:dkey-238m4.4 ENSDARG00000093248 3 si:dkey-238m4.4 [Source:ZFIN;Acc:ZDB-GENE-100922-215]










Genes with expression patterns similar to si:dkey-238m4.4

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. si:dkey-238m4.4 ENSDARG00000093248 3 4 - - - 1.000 - 1.000 - 1.000 1.000 si:dkey-238m4.4 [Source:ZFIN;Acc:ZDB-GENE-100922-215]
2. BX511182.1 BX511182.1 8 2 - - - 1.000 - 1.000 - - -
3. si:dkey-104n9.1 ENSDARG00000093042 41 1.854 - - - - - - - 1.000 0.854 si:dkey-104n9.1 [Source:ZFIN;Acc:ZDB-GENE-081104-300]
4. MTSS1L MTSS1L 7 1.854 - - - - - - - 1.000 0.854
5. shank3a ENSDARG00000063332 5 1.792 - - - 0.792 - - - 1.000 - SH3 and multiple ankyrin repeat domains 3a [Source:ZFIN;Acc:ZDB-GENE-060503-369]
6. MAP3K13 ENSDARG00000009493 8 1.577 - - - 0.755 - - - 0.822 - mitogen-activated protein kinase kinase kinase 13 [Source:HGNC Symbol;Acc:HGNC:6852]
7. sox8 sox8 109 1 - - - 1.000 - - - - -
8. GPX2 ENSDARG00000089149 10 1 - - - 1.000 - - - - - glutathione peroxidase 2 [Source:NCBI gene;Acc:100334384]
9. CCSER1 ENSDARG00000075919 16 1 - - - 1.000 - - - - - coiled-coil serine-rich protein 1 [Source:ZFIN;Acc:ZDB-GENE-081104-422]
10. si:ch73-67c22.3 si:ch73-67c22.3 30 1 - - - 1.000 - - - - -
11. RAP1GDS1 ENSDARG00000073741 0 1 - - - 1.000 - - - - - Rap1 GTPase-GDP dissociation stimulator 1 [Source:HGNC Symbol;Acc:HGNC:9859]
12. si:ch211-278f21.4 si:ch211-278f21.4 0 1 - - - 1.000 - - - - -
13. si:busm1-228j01.5 si:busm1-228j01.5 9 1 - - - - - - - 1.000 -
14. asap3 ENSDARG00000021896 19 1 - - - - - - - 1.000 - ArfGAP with SH3 domain, ankyrin repeat and PH domain 3 [Source:ZFIN;Acc:ZDB-GENE-050913-39]
15. bckdhb ENSDARG00000014676 17 1 - - - - - - - 1.000 - branched chain keto acid dehydrogenase E1, beta polypeptide [Source:ZFIN;Acc:ZDB-GENE-030124-2]
16. si:dkey-47k16.1 si:dkey-47k16.1 5 1 - - - 1.000 - - - - -
17. kcnma1b 0 1 - - - 1.000 - - - - - potassium large conductance calcium-activated channel, subfamily M, alpha member 1b
18. CABZ01070007.1 CABZ01070007.1 5 1 - - - - - - - 1.000 -
19. C12H17orf62 C12H17orf62 4 1 - - - - - 1.000 - - -
20. CABZ01112401.1 CABZ01112401.1 0 1 - - - 1.000 - - - - -
21. si:dkey-270b7.2 si:dkey-270b7.2 0 1 - - - - - - - 1.000 -
22. erap2 ENSDARG00000098618 16 1 - - - 1.000 - - - - - endoplasmic reticulum aminopeptidase 2 [Source:ZFIN;Acc:ZDB-GENE-080402-6]
23. snoU13 snoU13 2 1 - - - 1.000 - - - - -
24. si:dkey-54g2.5 si:dkey-54g2.5 2 1 - - - - - - - 1.000 -
25. BX682234.1 ENSDARG00000074732 5 1 - - - - - - - 1.000 - C-type lectin domain family 12 member B-like [Source:NCBI gene;Acc:101882781]
26. vwf ENSDARG00000077231 5 1 - - - 1.000 - - - - - von Willebrand factor [Source:ZFIN;Acc:ZDB-GENE-070103-1]
27. adck1 ENSDARG00000062561 22 1 - - - - - - - 1.000 - aarF domain containing kinase 1 [Source:ZFIN;Acc:ZDB-GENE-080401-5]
28. CU856140.1 CU856140.1 4316 1 - - - 1.000 - - - - -
29. CU681842.3 CU681842.3 2 1 - - - 1.000 - - - - -
30. pip5k1cb ENSDARG00000100313 3 1 - - - - - - - 1.000 - phosphatidylinositol-4-phosphate 5-kinase, type I, gamma b [Source:ZFIN;Acc:ZDB-GENE-110408-21]
31. si:ch211-262h13.6 si:ch211-262h13.6 0 1 - - - 1.000 - - - - -
32. rhol ENSDARG00000070666 0 1 - - - 1.000 - - - - - rhodopsin, like [Source:ZFIN;Acc:ZDB-GENE-070424-6]
33. buc ENSDARG00000096095 0 1 - - - 1.000 - - - - - bucky ball [Source:ZFIN;Acc:ZDB-GENE-070117-694]
34. si:ch211-112l17.3 si:ch211-112l17.3 8 1 - - - 1.000 - - - - -
35. pappab ENSDARG00000059858 11 1 - - - 1.000 - - - - - pregnancy-associated plasma protein A, pappalysin 1b [Source:ZFIN;Acc:ZDB-GENE-060526-71]
36. si:ch211-222j14.1 si:ch211-222j14.1 0 1 - - - 1.000 - - - - -
37. si:dkey-261j4.3 ENSDARG00000035151 156 1 - - - - - - - 1.000 - si:dkey-261j4.3 [Source:ZFIN;Acc:ZDB-GENE-060531-124]
38. si:busm1-180g5.7 si:busm1-180g5.7 15 1 - - - 1.000 - - - - -
39. elmod3 ENSDARG00000074742 6 1 - - - 1.000 - - - - - ELMO/CED-12 domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-091204-471]
40. csf3r ENSDARG00000045959 4 1 - - - - - 1.000 - - - colony stimulating factor 3 receptor (granulocyte) [Source:ZFIN;Acc:ZDB-GENE-080104-4]
41. agbl5 ENSDARG00000045900 2 1 - - - 1.000 - - - - - ATP/GTP binding protein-like 5 [Source:ZFIN;Acc:ZDB-GENE-040822-29]
42. ttc25 ENSDARG00000058140 2 1 - - - - - - - 1.000 - tetratricopeptide repeat domain 25 [Source:ZFIN;Acc:ZDB-GENE-040426-995]
43. si:ch211-161n3.5 ENSDARG00000095981 1 1 - - - - - - - 1.000 - si:ch211-161n3.5 [Source:ZFIN;Acc:ZDB-GENE-110913-81]
44. arhgap30 arhgap30 6 1 - - - 1.000 - - - - -
45. ABCC6 ABCC6 5 1 - - - 1.000 - - - - -
46. U6_21 U6_21 0 1 - - - 1.000 - - - - -
47. si:ch73-123f19.2 si:ch73-123f19.2 0 1 - - - 1.000 - - - - -
48. CABZ01078515.1 CABZ01078515.1 25 1 - - - - - - - 1.000 -
49. C11H3orf83_1 C11H3orf83_1 3 1 - - - 1.000 - - - - -
50. si:dkey-96n2.1 ENSDARG00000092172 0 1 - - - 1.000 - - - - - si:dkey-96n2.1 [Source:ZFIN;Acc:ZDB-GENE-030131-1759]
51. il11b ENSDARG00000058557 17 1 - - - 1.000 - - - - - interleukin 11b [Source:ZFIN;Acc:ZDB-GENE-051019-2]
52. si:dkey-267i17.2 si:dkey-267i17.2 0 1 - - - 1.000 - - - - -
53. irgq2 ENSDARG00000068657 4 1 - - - 1.000 - - - - - immunity-related GTPase family, q2 [Source:ZFIN;Acc:ZDB-GENE-051212-7]
54. si:dkey-58f10.10 ENSDARG00000094284 4 1 - - - 1.000 - - - - - si:dkey-58f10.10 [Source:ZFIN;Acc:ZDB-GENE-060526-312]
55. cep170b ENSDARG00000074636 4 1 - - - 1.000 - - - - - centrosomal protein 170B [Source:ZFIN;Acc:ZDB-GENE-131127-515]
56. si:dkey-30c15.9 si:dkey-30c15.9 4 1 - - - - - - - 1.000 -
57. clec3ba ENSDARG00000076541 3 1 - - - - - - - 1.000 - C-type lectin domain family 3, member Ba [Source:ZFIN;Acc:ZDB-GENE-110411-71]
58. CACNG5 CACNG5 1 1 - - - 1.000 - - - - -
59. ZNF423 ENSDARG00000059707 11 1 - - - 1.000 - - - - - zinc finger protein 423 [Source:HGNC Symbol;Acc:HGNC:16762]
60. si:dkey-179o14.4 si:dkey-179o14.4 2 1 - - - - - - - 1.000 -
61. Metazoa_SRP_18 Metazoa_SRP_18 4 1 - - - 1.000 - - - - -
62. si:ch211-57f7.7 ENSDARG00000093131 8 1 - - - - - - - 1.000 - si:ch211-57f7.7 [Source:ZFIN;Acc:ZDB-GENE-090313-119]
63. CR356223.2 ENSDARG00000100655 4 1 - - - 1.000 - - - - -
64. UIMC1 200 1 - - - - - - - 1.000 - ubiquitin interaction motif containing 1
65. gzma ENSDARG00000090380, ENSDARG00000112472 0 1 - - - - - - - 1.000 - granzyme A [Source:ZFIN;Acc:ZDB-GENE-091204-156]
66. si:ch211-238p8.10 ENSDARG00000115284 0 1 - - - 1.000 - - - - - si:ch211-238p8.10 [Source:ZFIN;Acc:ZDB-GENE-091117-24]
67. TTC21A 0 1 - - - 1.000 - - - - - tetratricopeptide repeat domain 21A, transcript variant X4
68. ftr15 122 1 - - - - - 1.000 - - - finTRIM family, member 15
69. CABZ01011032.1 CABZ01011032.1 1 1 - - - 1.000 - - - - -
70. Y_RNA Y_RNA 0 1 - - - - - - - 1.000 -
71. si:ch211-137i24.12 ENSDARG00000094537 35 1 - - - - - - - 1.000 - si:ch211-137i24.12 [Source:ZFIN;Acc:ZDB-GENE-060526-36]
72. si:dkey-27p18.6 4 1 - - - 1.000 - - - - - si:dkey-27p18.6, transcript variant X1
73. SNORA55 SNORA55 0 1 - - - 1.000 - - - - -
74. HEPHL1 HEPHL1 309 1 - - - 1.000 - - - - -
75. si:ch211-145h19.2 7 1 - - - 1.000 - - - - - si:ch211-145h19.2
76. si:dkey-15h8.3 si:dkey-15h8.3 0 1 - - - - - - - 1.000 -
77. mvb12ba ENSDARG00000091619 18 1 - - - 1.000 - - - - - multivesicular body subunit 12Ba [Source:ZFIN;Acc:ZDB-GENE-060929-372]
78. nr5a1a ENSDARG00000103176 12 1 - - - 1.000 - - - - - nuclear receptor subfamily 5, group A, member 1a [Source:ZFIN;Acc:ZDB-GENE-010504-1]
79. rock2b_1 ENSDARG00000004877, ENSDARG00000096433 0 1 - - - - - - - 1.000 - rho-associated, coiled-coil containing protein kinase 2b [Source:ZFIN;Acc:ZDB-GENE-060125-2]
80. CDR2_1 CDR2_1 8 1 - - - 1.000 - - - - -
81. CABZ01059406.1 ENSDARG00000088775 1 1 - - - 1.000 - - - - -
82. slc1a9 ENSDARG00000098269 12 1 - - - - - - - 1.000 - solute carrier family 1 (glutamate transporter), member 9 [Source:ZFIN;Acc:ZDB-GENE-101111-9]
83. RAB31 0 1 - - - 1.000 - - - - - RAB31, member RAS oncogene family, transcript variant X1
84. vti1a ENSDARG00000045065 7 1 - - - 1.000 - - - - - vesicle transport through interaction with t-SNAREs 1A [Source:ZFIN;Acc:ZDB-GENE-050809-135]
85. si:ch211-250k18.8_1 2 1 - - - - - - - 1.000 - si:ch211-250k18.8
86. si:ch211-51n3.1 si:ch211-51n3.1 26 1 - - - - - - - 1.000 -
87. zgc:171776 ENSDARG00000032156 14 1 - - - - - 1.000 - - - zgc:171776 [Source:ZFIN;Acc:ZDB-GENE-071004-36]
88. ENSDARG00000063316 ENSDARG00000063316 4 1 - - - 1.000 - - - - -
89. slc35f1 ENSDARG00000053003 0 1 - - - 1.000 - - - - - solute carrier family 35, member F1 [Source:ZFIN;Acc:ZDB-GENE-060503-463]
90. psmb11 psmb11 5 1 - - - - - - - 1.000 -
91. zgc:153311 ENSDARG00000015964 85 1 - - - 1.000 - - - - - zgc:153311 [Source:ZFIN;Acc:ZDB-GENE-060825-194]
92. si:dkeyp-101e12.1 ENSDARG00000089794 0 1 - - - 1.000 - - - - - si:dkeyp-101e12.1 [Source:ZFIN;Acc:ZDB-GENE-091113-32]
93. si:ch73-92e20.2 si:ch73-92e20.2 2 1 - - - 1.000 - - - - -
94. tirap ENSDARG00000074371 10 1 - - - - - - - 1.000 - toll-interleukin 1 receptor (TIR) domain containing adaptor protein [Source:ZFIN;Acc:ZDB-GENE-040219-4]
95. plac8l1 ENSDARG00000069031 161 1 - - - - - 1.000 - - - PLAC8-like 1 [Source:ZFIN;Acc:ZDB-GENE-091204-165]
96. si:rp71-7l19.6 si:rp71-7l19.6 12 1 - - - 1.000 - - - - -
97. si:dkey-72l17.1 si:dkey-72l17.1 0 1 - - - 1.000 - - - - -
98. si:ch211-135l21.9 si:ch211-135l21.9 8 1 - - - 1.000 - - - - -
99. CABZ01079979.1 CABZ01079979.1 1 1 - - - - - - - 1.000 -
100. si:ch211-103n10.5 ENSDARG00000077504, ENSDARG00000116548 8 1 - - - 1.000 - - - - - si:ch211-103n10.5 [Source:ZFIN;Acc:ZDB-GENE-030131-5155]

There are 182 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA