Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for si:ch211-288g17.3

Gene Name Gene ID Reads Annotation
si:ch211-288g17.3 ENSDARG00000070959 2425 si:ch211-288g17.3 [Source:ZFIN;Acc:ZDB-GENE-030131-461]










Genes with expression patterns similar to si:ch211-288g17.3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. si:ch211-288g17.3 ENSDARG00000070959 2425 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 si:ch211-288g17.3 [Source:ZFIN;Acc:ZDB-GENE-030131-461]
2. pak2b ENSDARG00000018476 4331 3.129 - 0.790 - - 0.916 0.709 0.714 - - p21 protein (Cdc42/Rac)-activated kinase 2b [Source:ZFIN;Acc:ZDB-GENE-030131-3759]
3. ctbp1 ENSDARG00000057007, ENSDARG00000115804 5795 3.081 - - 0.730 - - 0.747 0.836 - 0.768 C-terminal binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-010130-1]
4. dpysl2b ENSDARG00000032083, ENSDARG00000109782 3487 3.066 - - 0.815 0.706 - - 0.843 - 0.702 dihydropyrimidinase-like 2b [Source:ZFIN;Acc:ZDB-GENE-031105-1]
5. LIG1 ENSDARG00000060041, ENSDARG00000110159, ENSDARG00000113788 8110 2.685 - - - - 0.925 - 0.912 - 0.848 ligase I, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-110404-2]
6. nrn1a ENSDARG00000071860 1311 2.548 - - - - 0.970 - 0.768 - 0.810 neuritin 1a [Source:ZFIN;Acc:ZDB-GENE-040718-212]
7. st8sia2 ENSDARG00000018788 2183 2.545 - - - - 0.854 - 0.843 - 0.848 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-020919-4]
8. CLSPN 2054 2.506 - - 0.745 - 0.934 - 0.827 - - claspin
9. usp49 ENSDARG00000000229 706 2.49 - - 0.732 - 0.953 - - - 0.805 ubiquitin specific peptidase 49 [Source:ZFIN;Acc:ZDB-GENE-050208-484]
10. C24H17orf96 C24H17orf96 1538 2.474 - 0.761 0.809 - - - 0.904 - -
11. SSBP4 ENSDARG00000056483 5156 2.434 - - 0.907 - - - 0.813 0.714 - single stranded DNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-030131-469]
12. cpsf5 cpsf5 1841 2.433 - 0.719 - - 0.913 - 0.801 - -
13. AKT3 AKT3 1729 2.405 - - 0.790 - - - 0.754 - 0.861
14. wu:fj29h11 ENSDARG00000096562 863 2.402 - - - - 0.917 - 0.702 - 0.783 wu:fj29h11 [Source:ZFIN;Acc:ZDB-GENE-030131-7558]
15. sumo3b ENSDARG00000035993 3414 2.401 - - 0.741 - - - 0.850 - 0.810 small ubiquitin-like modifier 3b [Source:ZFIN;Acc:ZDB-GENE-040718-426]
16. appb ENSDARG00000055543, ENSDARG00000109552 4461 2.373 - 0.837 - - - - 0.804 - 0.732 amyloid beta (A4) precursor protein b [Source:ZFIN;Acc:ZDB-GENE-020220-1]
17. mtss1l mtss1l 2494 2.373 - - - 0.709 0.884 - 0.780 - -
18. ZFHX3 ENSDARG00000103057 7759 2.369 - - 0.777 0.770 - - 0.822 - - zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
19. rfx4 ENSDARG00000026395, ENSDARG00000116861 2047 2.367 - - - - 0.940 0.722 0.705 - - regulatory factor X, 4 [Source:ZFIN;Acc:ZDB-GENE-040909-2]
20. ylpm1 ENSDARG00000043680 7676 2.364 0.724 - 0.818 - - - 0.822 - - YLP motif containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2196]
21. insm1a ENSDARG00000091756 1838 2.356 - - 0.780 - - - 0.738 - 0.838 insulinoma-associated 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1810]
22. npas3b npas3b 1446 2.344 - - 0.786 - - - 0.785 - 0.773
23. myt1b ENSDARG00000102879 5411 2.343 - - 0.754 - - - 0.799 - 0.790 myelin transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-090313-67]
24. her15.2 her15.2 1701 2.327 - - - - 0.760 - 0.774 - 0.793
25. tmem198a ENSDARG00000042115 1694 2.321 - - 0.843 - - 0.700 0.778 - - transmembrane protein 198a [Source:ZFIN;Acc:ZDB-GENE-070912-716]
26. TNPO2 ENSDARG00000042887 2290 2.319 - - 0.715 - 0.787 - - - 0.817 transportin 2 [Source:HGNC Symbol;Acc:HGNC:19998]
27. ANKRD11 ENSDARG00000051886 10024 2.318 - 0.817 0.767 - - - 0.734 - - ankyrin repeat domain 11 [Source:ZFIN;Acc:ZDB-GENE-030131-3932]
28. myt1a ENSDARG00000074030, ENSDARG00000116035 2839 2.315 - - - - 0.793 - 0.768 - 0.754 myelin transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3885]
29. msi1 ENSDARG00000010710 2634 2.301 - - 0.747 - - - 0.771 - 0.783 musashi RNA-binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050320-86]
30. rbm25 rbm25 3629 2.298 - 0.786 - - - 0.740 0.772 - -
31. knop1 ENSDARG00000077721 2198 2.297 - 0.704 0.736 - 0.857 - - - - lysine-rich nucleolar protein 1 [Source:ZFIN;Acc:ZDB-GENE-090313-76]
32. cspg5a ENSDARG00000069981 1699 2.292 - - - 0.710 - - 0.812 - 0.770 chondroitin sulfate proteoglycan 5a [Source:ZFIN;Acc:ZDB-GENE-080425-4]
33. ubl3b ENSDARG00000021556 1210 2.291 - 0.740 - - - - 0.784 - 0.767 ubiquitin-like 3b [Source:ZFIN;Acc:ZDB-GENE-040630-4]
34. gse1 ENSDARG00000062020 2337 2.279 - - 0.710 - - - 0.705 - 0.864 Gse1 coiled-coil protein [Source:ZFIN;Acc:ZDB-GENE-030131-9569]
35. pcdh18a ENSDARG00000089805 1096 2.279 - - - - - 0.782 0.722 - 0.775 protocadherin 18a [Source:ZFIN;Acc:ZDB-GENE-000607-1]
36. gnao1a ENSDARG00000016676 8184 2.275 - - 0.761 - - - 0.799 - 0.715 guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O, a [Source:ZFIN;Acc:ZDB-GENE-040426-1757]
37. ank2b ENSDARG00000043313 3065 2.268 - - - - - 0.740 0.746 - 0.782 ankyrin 2b, neuronal [Source:ZFIN;Acc:ZDB-GENE-041010-165]
38. dut ENSDARG00000106529 3120 2.26 - - - - 0.771 - 0.721 - 0.768 deoxyuridine triphosphatase [Source:ZFIN;Acc:ZDB-GENE-041010-93]
39. CU928222.1 ENSDARG00000097436 1662 2.258 - - - - 0.700 0.762 0.796 - -
40. tmpob ENSDARG00000022978 8121 2.255 - - 0.793 0.701 - - 0.761 - - thymopoietin b [Source:ZFIN;Acc:ZDB-GENE-050522-8]
41. ephb3a ENSDARG00000031548 1872 2.25 - - - 0.740 - - 0.726 - 0.784 eph receptor B3a [Source:ZFIN;Acc:ZDB-GENE-990415-60]
42. her2 ENSDARG00000038205 3219 2.238 - - - - 0.747 0.709 0.782 - - hairy-related 2 [Source:ZFIN;Acc:ZDB-GENE-980526-274]
43. snrnp70 ENSDARG00000077126 5921 2.236 - - 0.714 - - 0.749 - - 0.773 small nuclear ribonucleoprotein 70 (U1) [Source:ZFIN;Acc:ZDB-GENE-040825-2]
44. hcfc1b ENSDARG00000012519 3633 2.234 - - 0.787 - - - 0.740 0.707 - host cell factor C1b [Source:ZFIN;Acc:ZDB-GENE-030131-2411]
45. khsrp ENSDARG00000026489 15738 2.231 0.719 - - - - 0.734 0.778 - - KH-type splicing regulatory protein [Source:ZFIN;Acc:ZDB-GENE-030131-4357]
46. plagx ENSDARG00000036855 3768 2.227 - - 0.731 - - - 0.774 - 0.722 pleiomorphic adenoma gene X [Source:ZFIN;Acc:ZDB-GENE-030131-839]
47. hn1b hn1b 7325 2.217 0.705 0.789 - - - - 0.723 - -
48. FAM168B ENSDARG00000101733, ENSDARG00000113953, ENSDARG00000115746 2175 2.202 - - 0.702 0.716 - - 0.784 - - family with sequence similarity 168, member B [Source:ZFIN;Acc:ZDB-GENE-060929-180]
49. JHDM1D JHDM1D 2277 2.2 - - 0.715 - 0.748 - - - 0.737
50. med1 ENSDARG00000075340 2421 2.191 - 0.736 0.741 - - 0.714 - - - mediator complex subunit 1 [Source:ZFIN;Acc:ZDB-GENE-081104-257]
51. jarid2b ENSDARG00000062268 2206 2.163 - - 0.728 - - 0.730 0.705 - - jumonji, AT rich interactive domain 2b [Source:ZFIN;Acc:ZDB-GENE-060503-246]
52. chd9 ENSDARG00000074498, ENSDARG00000112964 2603 2.158 - 0.724 0.712 - - - - - 0.722 chromodomain helicase DNA binding protein 9 [Source:ZFIN;Acc:ZDB-GENE-030131-497]
53. tgif1 ENSDARG00000059337 4020 2.148 - 0.714 0.728 - - - 0.706 - - TGFB-induced factor homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-030131-475]
54. KIF4A KIF4A 3322 1.815 - - - - - - 0.864 0.951 -
55. gad2 ENSDARG00000015537 724 1.81 - - - - 0.956 - - - 0.854 glutamate decarboxylase 2 [Source:ZFIN;Acc:ZDB-GENE-030909-9]
56. mycla ENSDARG00000006003 1866 1.785 - - - - 0.966 - 0.819 - - MYCL proto-oncogene, bHLH transcription factor a [Source:ZFIN;Acc:ZDB-GENE-040426-2439]
57. LPL_1 LPL_1 1150 1.776 - - - - 0.964 - - - 0.812
58. zgc:114130 ENSDARG00000040725, ENSDARG00000116854 806 1.759 - - - - 0.966 - 0.793 - - zgc:114130 [Source:ZFIN;Acc:ZDB-GENE-050913-48]
59. etv1 ENSDARG00000101959 358 1.759 - - - - 0.984 - - - 0.775 ets variant 1 [Source:ZFIN;Acc:ZDB-GENE-070104-1]
60. syncripl ENSDARG00000026723 3889 1.75 - - - - - - 0.884 - 0.866 synaptotagmin binding, cytoplasmic RNA interacting protein, like [Source:ZFIN;Acc:ZDB-GENE-030131-3104]
61. ogfr ENSDARG00000037837 1001 1.749 - - - - 0.924 0.825 - - - opioid growth factor receptor [Source:ZFIN;Acc:ZDB-GENE-030131-377]
62. ehmt1b ENSDARG00000026634, ENSDARG00000116921 1261 1.746 - - - - 0.948 - - - 0.798 euchromatic histone-lysine N-methyltransferase 1b [Source:ZFIN;Acc:ZDB-GENE-080515-3]
63. smg5 ENSDARG00000041481 1286 1.738 - 0.803 - - 0.935 - - - - SMG5 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-050913-144]
64. kdm5c ENSDARG00000006124 4389 1.735 - - - - 0.941 - - - 0.794 lysine (K)-specific demethylase 5C [Source:ZFIN;Acc:ZDB-GENE-060810-94]
65. ankhd1 ENSDARG00000077860 5510 1.733 - - - - - - - 0.958 0.775 ankyrin repeat and KH domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-090421-1]
66. gng3 ENSDARG00000009553 2530 1.724 - - - - 0.946 - 0.778 - - guanine nucleotide binding protein (G protein), gamma 3 [Source:ZFIN;Acc:ZDB-GENE-010705-1]
67. slc18a3a ENSDARG00000006356 1285 1.722 - - - - 0.923 - 0.799 - - solute carrier family 18 (vesicular acetylcholine transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-060929-990]
68. CABZ01087568.1 CABZ01087568.1 1487 1.719 - - - - 0.933 - - - 0.786
69. dhdds ENSDARG00000039851 1135 1.719 - - - - 0.968 - - - 0.751 dehydrodolichyl diphosphate synthase [Source:ZFIN;Acc:ZDB-GENE-040426-2236]
70. si:ch211-278j3.3 ENSDARG00000020284 478 1.717 - - - - 0.969 - 0.748 - - si:ch211-278j3.3 [Source:ZFIN;Acc:ZDB-GENE-041014-147]
71. pcdh18b ENSDARG00000052494, ENSDARG00000116134 1099 1.715 - - - - 0.950 - - - 0.765 protocadherin 18b [Source:ZFIN;Acc:ZDB-GENE-080804-1]
72. gdi1 ENSDARG00000056122 4106 1.713 - - - - 0.858 - - - 0.855 GDP dissociation inhibitor 1 [Source:ZFIN;Acc:ZDB-GENE-050522-504]
73. PTP4A3 ENSDARG00000039997 3814 1.709 - 0.845 - - - - - 0.864 - protein tyrosine phosphatase type IVA, member 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2220]
74. wu:fq41a10 wu:fq41a10 7009 1.709 - - - - 0.906 - 0.803 - -
75. TNRC6B ENSDARG00000074161 2464 1.709 - - - - 0.934 - - - 0.775 trinucleotide repeat containing 6b [Source:ZFIN;Acc:ZDB-GENE-030131-13]
76. dip2ba ENSDARG00000005350, ENSDARG00000111011, ENSDARG00000111214 1640 1.705 - 0.795 - - 0.910 - - - - disco-interacting protein 2 homolog Ba [Source:ZFIN;Acc:ZDB-GENE-040426-2305]
77. usp48 ENSDARG00000090301 1396 1.703 - - - - - - 0.790 0.913 - ubiquitin specific peptidase 48 [Source:ZFIN;Acc:ZDB-GENE-050522-197]
78. mex3b ENSDARG00000058369 1867 1.7 - - - - - - 0.851 - 0.849 mex-3 RNA binding family member B [Source:ZFIN;Acc:ZDB-GENE-030131-2628]
79. tspan5b ENSDARG00000070449 1056 1.695 - - - - 0.900 - - - 0.795 tetraspanin 5b [Source:ZFIN;Acc:ZDB-GENE-041212-12]
80. rimkla ENSDARG00000016830, ENSDARG00000112193 4111 1.693 - - - - - - 0.825 - 0.868 ribosomal modification protein rimK-like family member A [Source:ZFIN;Acc:ZDB-GENE-040912-20]
81. melk ENSDARG00000030759 1150 1.688 - - - - 0.909 - - - 0.779 maternal embryonic leucine zipper kinase [Source:ZFIN;Acc:ZDB-GENE-990603-5]
82. ENSDARG00000086878 ENSDARG00000086878 332 1.688 - - - - 0.974 - 0.714 - -
83. eif3ja ENSDARG00000012603 6324 1.685 - 0.718 - - 0.967 - - - - eukaryotic translation initiation factor 3, subunit Ja [Source:ZFIN;Acc:ZDB-GENE-040426-1266]
84. apaf1 ENSDARG00000021239 1185 1.68 - 0.784 - - 0.896 - - - - apoptotic peptidase activating factor 1 [Source:ZFIN;Acc:ZDB-GENE-000616-4]
85. amotl2a ENSDARG00000061923 4713 1.675 - 0.709 - - 0.966 - - - - angiomotin like 2a [Source:ZFIN;Acc:ZDB-GENE-030131-9770]
86. hsp90aa1.2 ENSDARG00000024746 5210 1.671 - - - - 0.824 0.847 - - - heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-031001-3]
87. mapk3 ENSDARG00000070573 6842 1.669 - 0.775 - - 0.894 - - - - mitogen-activated protein kinase 3 [Source:ZFIN;Acc:ZDB-GENE-040121-1]
88. tfap4 ENSDARG00000103923 2203 1.664 - - - - 0.929 - 0.735 - - transcription factor AP-4 (activating enhancer binding protein 4) [Source:ZFIN;Acc:ZDB-GENE-090810-1]
89. CR936437.1 CR936437.1 6465 1.659 - - 0.795 - - - 0.864 - -
90. hoxa9b ENSDARG00000056819 3081 1.658 - 0.809 - - - - 0.849 - - homeobox A9b [Source:ZFIN;Acc:ZDB-GENE-000823-2]
91. fzd3a ENSDARG00000021664 1958 1.657 - - 0.735 - - - 0.922 - - frizzled class receptor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-225]
92. dock7 ENSDARG00000078675 1995 1.657 - - - - 0.889 - - - 0.768 dedicator of cytokinesis 7 [Source:ZFIN;Acc:ZDB-GENE-050302-15]
93. TUBGCP6 1991 1.655 - - - - 0.936 - - 0.719 - tubulin, gamma complex associated protein 6
94. PHLPP1 ENSDARG00000078694 2466 1.655 - - - - 0.951 - - 0.704 - PH domain and leucine rich repeat protein phosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-131127-271]
95. pou2f1b ENSDARG00000007996 2172 1.654 - - 0.815 - - - 0.839 - - POU class 2 homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2422]
96. get4 ENSDARG00000024398 1818 1.653 - 0.720 - - 0.933 - - - - golgi to ER traffic protein 4 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-5399]
97. fhdc1 ENSDARG00000074812 934 1.653 - - - - 0.923 - 0.730 - - FH2 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040826-4]
98. zswim5 ENSDARG00000055900 4243 1.652 - - - - 0.745 - 0.907 - - zinc finger, SWIM-type containing 5 [Source:ZFIN;Acc:ZDB-GENE-030925-30]
99. islr2 ENSDARG00000051875, ENSDARG00000109523 2288 1.651 - - - - - - 0.785 - 0.866 immunoglobulin superfamily containing leucine-rich repeat 2 [Source:ZFIN;Acc:ZDB-GENE-050320-95]
100. scaf4a ENSDARG00000077093 2408 1.649 - 0.788 - - 0.861 - - - - SR-related CTD-associated factor 4a [Source:ZFIN;Acc:ZDB-GENE-030131-9003]

There are 2204 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA