Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for si:ch211-237l4.6

Gene Name Gene ID Reads Annotation
si:ch211-237l4.6 ENSDARG00000056915 49 si:ch211-237l4.6 [Source:ZFIN;Acc:ZDB-GENE-040724-42]










Genes with expression patterns similar to si:ch211-237l4.6

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. si:ch211-237l4.6 ENSDARG00000056915 49 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 si:ch211-237l4.6 [Source:ZFIN;Acc:ZDB-GENE-040724-42]
2. traf1 ENSDARG00000069482 50 2.855 - 1.000 - - - - 0.914 0.941 - TNF receptor-associated factor 1 [Source:ZFIN;Acc:ZDB-GENE-071120-4]
3. lrrc18b ENSDARG00000076236 5 2.714 1.000 1.000 - - - - 0.714 - - leucine rich repeat containing 18b [Source:ZFIN;Acc:ZDB-GENE-110315-1]
4. CU929052.1 CU929052.1 642 2.643 1.000 - - - 0.729 - 0.914 - -
5. prdm1b ENSDARG00000098925 440 2.486 1.000 - 0.738 - 0.748 - - - - PR domain containing 1b, with ZNF domain [Source:ZFIN;Acc:ZDB-GENE-080618-2]
6. pcdh1g18 ENSDARG00000099447 7 2 1.000 1.000 - - - - - - - protocadherin 1 gamma 18 [Source:ZFIN;Acc:ZDB-GENE-050609-13]
7. cdk5r1a ENSDARG00000037916 46 2 1.000 1.000 - - - - - - - cyclin-dependent kinase 5, regulatory subunit 1a (p35) [Source:ZFIN;Acc:ZDB-GENE-080723-17]
8. si:ch73-7i4.1 ENSDARG00000094554 771 2 1.000 1.000 - - - - - - - si:ch73-7i4.1 [Source:ZFIN;Acc:ZDB-GENE-100921-19]
9. NFATC4 ENSDARG00000054162 44 1.976 - 1.000 - - - - 0.976 - - nuclear factor of activated T cells 4 [Source:ZFIN;Acc:ZDB-GENE-070912-659]
10. UBASH3B_1 UBASH3B_1 28 1.961 1.000 0.961 - - - - - - -
11. mtus2 mtus2 22 1.914 - 1.000 - - - - 0.914 - -
12. si:ch211-199m9.2 si:ch211-199m9.2 9 1.914 - 1.000 - - - - 0.914 - -
13. PCDH10 PCDH10 7 1.914 - 1.000 - - - - 0.914 - -
14. ca10b ENSDARG00000009568 8 1.914 - 1.000 - - - - 0.914 - - carbonic anhydrase Xb [Source:ZFIN;Acc:ZDB-GENE-080815-2]
15. urgcp ENSDARG00000036767 6 1.914 - 1.000 - - - - 0.914 - - upregulator of cell proliferation [Source:ZFIN;Acc:ZDB-GENE-120215-160]
16. phf21aa ENSDARG00000006878 31 1.914 - 1.000 - - - - 0.914 - - PHD finger protein 21Aa [Source:ZFIN;Acc:ZDB-GENE-050208-99]
17. ABHD12B_1 ABHD12B_1 57 1.888 - 1.000 - - - - 0.888 - -
18. si:dkeyp-106c3.1 ENSDARG00000090623 225 1.875 - 1.000 - - - 0.875 - - - si:dkeyp-106c3.1 [Source:ZFIN;Acc:ZDB-GENE-050411-73]
19. si:dkey-81p22.11 ENSDARG00000093797 68 1.854 0.854 1.000 - - - - - - - si:dkey-81p22.11 [Source:NCBI gene;Acc:100535473]
20. kirrel3a ENSDARG00000075806 36 1.854 0.957 - - - - 0.897 - - - kirre like nephrin family adhesion molecule 3a [Source:ZFIN;Acc:ZDB-GENE-091117-44]
21. si:dkey-14o6.7 si:dkey-14o6.7 9 1.854 0.854 1.000 - - - - - - -
22. si:ch211-283g2.2 ENSDARG00000108340, ENSDARG00000108953 59 1.849 - 1.000 - - - - 0.849 - - si:ch211-283g2.2 [Source:ZFIN;Acc:ZDB-GENE-060526-151]
23. sergef ENSDARG00000070986, ENSDARG00000111782 48 1.837 - 1.000 - - - - 0.837 - - secretion regulating guanine nucleotide exchange factor [Source:ZFIN;Acc:ZDB-GENE-061220-11]
24. ppp1r3db ENSDARG00000076248 32 1.828 0.957 - - - - 0.871 - - - protein phosphatase 1, regulatory subunit 3Db [Source:ZFIN;Acc:ZDB-GENE-110201-1]
25. olfm1a ENSDARG00000018270 107 1.806 - 1.000 - - - - 0.806 - - olfactomedin 1a [Source:ZFIN;Acc:ZDB-GENE-040718-194]
26. dclre1a ENSDARG00000091768 94 1.795 - 1.000 - - - - 0.795 - - DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050522-124]
27. nub1 ENSDARG00000061417 33 1.794 - - - - - 0.880 0.914 - - negative regulator of ubiquitin-like proteins 1 [Source:ZFIN;Acc:ZDB-GENE-080212-11]
28. cdh18 cdh18 64 1.785 - 1.000 - - - - 0.785 - -
29. zgc:171551 ENSDARG00000073708, ENSDARG00000111940 24 1.785 - - - - - 0.871 0.914 - - zgc:171551 [Source:ZFIN;Acc:ZDB-GENE-080220-8]
30. si:dkeyp-3f10.17 ENSDARG00000087254 1 1.785 - - - - - 0.871 0.914 - - si:dkeyp-3f10.17 [Source:ZFIN;Acc:ZDB-GENE-081104-467]
31. top3b ENSDARG00000027586 8 1.785 - - - - - 0.871 0.914 - - DNA topoisomerase III beta [Source:ZFIN;Acc:ZDB-GENE-070705-37]
32. PGBD4_4 PGBD4_4 15 1.785 - - - - - 0.871 0.914 - -
33. lhx5 ENSDARG00000057936 785 1.781 - 1.000 0.781 - - - - - - LIM homeobox 5 [Source:ZFIN;Acc:ZDB-GENE-980526-484]
34. si:dkey-14d8.9 si:dkey-14d8.9 66 1.771 1.000 0.771 - - - - - - -
35. wdr17 ENSDARG00000075098 83 1.77 - 1.000 - - - - 0.770 - - WD repeat domain 17 [Source:ZFIN;Acc:ZDB-GENE-090313-131]
36. fscn1b ENSDARG00000037747, ENSDARG00000111370 75 1.766 - 0.852 - - - - 0.914 - - fascin actin-bundling protein 1b [Source:ZFIN;Acc:ZDB-GENE-120507-1]
37. TMEM57 TMEM57 260 1.761 - 1.000 0.761 - - - - - -
38. iscub ENSDARG00000026582, ENSDARG00000115112 147 1.758 0.840 - - - - - 0.918 - - iron-sulfur cluster assembly enzyme b [Source:ZFIN;Acc:ZDB-GENE-050417-332]
39. b3galnt2 ENSDARG00000046133 68 1.727 0.880 0.847 - - - - - - - beta-1,3-N-acetylgalactosaminyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-050522-358]
40. cd40 ENSDARG00000054968 90 1.716 - - - - - - 0.773 0.943 - CD40 molecule, TNF receptor superfamily member 5 [Source:ZFIN;Acc:ZDB-GENE-090313-95]
41. si:ch211-59h6.1 ENSDARG00000013022 193 1.705 - - - - - - 0.793 0.912 - si:ch211-59h6.1 [Source:ZFIN;Acc:ZDB-GENE-091204-418]
42. mapk15 ENSDARG00000100822 157 1.702 0.815 0.887 - - - - - - - mitogen-activated protein kinase 15 [Source:ZFIN;Acc:ZDB-GENE-050522-307]
43. TRABD2A ENSDARG00000089701 401 1.701 - - - - - - 0.838 0.863 - TraB domain containing 2A [Source:ZFIN;Acc:ZDB-GENE-030131-4053]
44. BX511021.2 ENSDARG00000097646 5 1.697 - - - - 0.783 - 0.914 - -
45. gpr56 gpr56 523 1.692 - 0.823 - - - - - 0.869 -
46. si:ch211-141o9.10 ENSDARG00000077900 98 1.691 - 0.844 - - - - - 0.847 - si:ch211-141o9.10 [Source:ZFIN;Acc:ZDB-GENE-130603-5]
47. si:dkey-56i24.1 ENSDARG00000053345, ENSDARG00000078152 11 1.669 - - - - 0.755 - 0.914 - - si:dkey-56i24.1 [Source:ZFIN;Acc:ZDB-GENE-081105-8]
48. si:dkey-14d8.2 38 1.664 - - - - - 0.726 - 0.938 - si:dkey-14d8.2
49. ism2 ism2 153 1.652 - - - - - - 0.781 0.871 -
50. paqr7a ENSDARG00000100462 15 1.651 - - - - 0.823 - 0.828 - - progestin and adipoQ receptor family member VII, a [Source:ZFIN;Acc:ZDB-GENE-070705-346]
51. foxa2 ENSDARG00000003411 2309 1.623 0.702 - - - - 0.921 - - - forkhead box A2 [Source:ZFIN;Acc:ZDB-GENE-980526-404]
52. BX957297.2 ENSDARG00000105608 194 1.62 - 0.742 - - - 0.878 - - -
53. AL954696.1 ENSDARG00000078442 768 1.602 - - - - - - 0.723 0.879 - NOP9 nucleolar protein [Source:NCBI gene;Acc:100332577]
54. si:dkey-11e23.4 si:dkey-11e23.4 46 1.591 0.848 - - - - - 0.743 - -
55. eomesa ENSDARG00000006640 257 1.573 - - 0.824 - 0.749 - - - - eomesodermin homolog a [Source:ZFIN;Acc:ZDB-GENE-001228-1]
56. tbr1b ENSDARG00000004712 248 1.566 - - 0.843 - 0.723 - - - - T-box, brain, 1b [Source:ZFIN;Acc:ZDB-GENE-000323-1]
57. GRIK3 ENSDARG00000077715 178 1.549 - - - - - 0.749 0.800 - - glutamate ionotropic receptor kainate type subunit 3 [Source:HGNC Symbol;Acc:HGNC:4581]
58. polr3h ENSDARG00000102590 209 1.543 - - - - - 0.700 0.843 - - polymerase (RNA) III (DNA directed) polypeptide H [Source:ZFIN;Acc:ZDB-GENE-040718-179]
59. eef1a1a ENSDARG00000039502 234 1.536 0.802 - - - - 0.734 - - - eukaryotic translation elongation factor 1 alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-8278]
60. ccdc149b ENSDARG00000020857, ENSDARG00000111838 28 1.532 - - - - 0.809 0.723 - - - coiled-coil domain containing 149b [Source:ZFIN;Acc:ZDB-GENE-040718-465]
61. sulf2 sulf2 1286 1.482 - - - - - 0.726 - 0.756 -
62. zbtb20 ENSDARG00000005586 195 1.464 - - 0.728 - - - 0.736 - - zinc finger and BTB domain containing 20 [Source:ZFIN;Acc:ZDB-GENE-070112-1992]
63. n6amt2 7 1 - 1.000 - - - - - - - N-6 adenine-specific DNA methyltransferase 2 (putative), transcript variant X1
64. atp2b2 ENSDARG00000044902, ENSDARG00000063433 140 1 - 1.000 - - - - - - - ATPase plasma membrane Ca2+ transporting 2 [Source:ZFIN;Acc:ZDB-GENE-061016-1]
65. HYKK_1 HYKK_1 4 1 - 1.000 - - - - - - -
66. st8sia3 ENSDARG00000045301 3 1 1.000 - - - - - - - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 [Source:ZFIN;Acc:ZDB-GENE-060228-4]
67. neu3.1 ENSDARG00000096382 9 1 - 1.000 - - - - - - - sialidase 3 (membrane sialidase), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-061201-39]
68. BX005294.2 ENSDARG00000109361 3 1 - 1.000 - - - - - - -
69. rims1a ENSDARG00000074680 143 1 - 1.000 - - - - - - - regulating synaptic membrane exocytosis 1a [Source:ZFIN;Acc:ZDB-GENE-090312-135]
70. vip ENSDARG00000078247 10 1 - 1.000 - - - - - - - vasoactive intestinal peptide [Source:ZFIN;Acc:ZDB-GENE-080204-3]
71. si:dkey-100n10.2 101 1 - 1.000 - - - - - - - si:dkey-100n10.2
72. RAPGEF4 ENSDARG00000079872 82 1 - 1.000 - - - - - - - Rap guanine nucleotide exchange factor (GEF) 4 [Source:ZFIN;Acc:ZDB-GENE-070912-385]
73. lingo2 lingo2 67 1 1.000 - - - - - - - -
74. si:dkey-71b5.6 ENSDARG00000098861 12 1 - 1.000 - - - - - - - si:dkey-71b5.6 [Source:NCBI gene;Acc:100294632]
75. tfr1b ENSDARG00000077372, ENSDARG00000112880 24 1 - 1.000 - - - - - - - transferrin receptor 1b [Source:ZFIN;Acc:ZDB-GENE-041220-2]
76. zgc:154040 16 1 1.000 - - - - - - - - zgc:154040
77. bmp8a ENSDARG00000035677 40 1 1.000 - - - - - - - - bone morphogenetic protein 8a [Source:ZFIN;Acc:ZDB-GENE-030912-13]
78. si:dkey-3n22.9 ENSDARG00000096273 1 1 - 1.000 - - - - - - - si:dkey-3n22.9 [Source:ZFIN;Acc:ZDB-GENE-120215-95]
79. si:dkeyp-59a8.1 si:dkeyp-59a8.1 6 1 - 1.000 - - - - - - -
80. chrna6 ENSDARG00000055559 60 1 - 1.000 - - - - - - - cholinergic receptor, nicotinic, alpha 6 [Source:ZFIN;Acc:ZDB-GENE-090312-91]
81. klhl42 ENSDARG00000006011 46 1 - 1.000 - - - - - - - kelch-like family, member 42 [Source:ZFIN;Acc:ZDB-GENE-041210-190]
82. si:dkey-24p1.7 ENSDARG00000089404 7 1 - 1.000 - - - - - - - si:dkey-24p1.7 [Source:ZFIN;Acc:ZDB-GENE-121214-215]
83. foxq1a ENSDARG00000030896 121 1 1.000 - - - - - - - - forkhead box Q1a [Source:ZFIN;Acc:ZDB-GENE-070424-74]
84. PTGR2 ENSDARG00000070673 43 1 - 1.000 - - - - - - - prostaglandin reductase 2 [Source:ZFIN;Acc:ZDB-GENE-050506-71]
85. cyp27a7 ENSDARG00000033802 216 1 - 1.000 - - - - - - - cytochrome P450, family 27, subfamily A, polypeptide 7 [Source:ZFIN;Acc:ZDB-GENE-081104-519]
86. CABZ01073954.1 CABZ01073954.1 258 1 - 1.000 - - - - - - -
87. MFAP4_7 MFAP4_7 43 1 - 1.000 - - - - - - -
88. PARP9 ENSDARG00000006848 34 1 1.000 - - - - - - - - poly(ADP-ribose) polymerase family member 9 [Source:ZFIN;Acc:ZDB-GENE-081104-179]
89. CU459152.1 CU459152.1 407 1 - 1.000 - - - - - - -
90. si:dkey-233e3.4 si:dkey-233e3.4 3 1 - 1.000 - - - - - - -
91. FP236162.1 FP236162.1 2 1 1.000 - - - - - - - -
92. NPFFR1 ENSDARG00000111997 29 1 1.000 - - - - - - - - neuropeptide FF receptor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8106]
93. SNORA31 SNORA31 23 1 - 1.000 - - - - - - -
94. CU457778.1 ENSDARG00000098976 38 1 - 1.000 - - - - - - - uncharacterized LOC100535115 [Source:NCBI gene;Acc:100535115]
95. BX321870.1 ENSDARG00000098519 9 1 - 1.000 - - - - - - -
96. CABZ01023601.1 CABZ01023601.1 1 1 - 1.000 - - - - - - -
97. b3galtla b3galtla 111 1 - 1.000 - - - - - - -
98. SDR16C5 SDR16C5 34 1 - 1.000 - - - - - - -
99. si:dkey-45j10.2 si:dkey-45j10.2 5 1 1.000 - - - - - - - -
100. rapgef3 ENSDARG00000079291 69 1 1.000 - - - - - - - - Rap guanine nucleotide exchange factor (GEF) 3 [Source:ZFIN;Acc:ZDB-GENE-090312-38]

There are 1331 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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