Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for si:ch211-198e13.3

Gene Name Gene ID Reads Annotation
si:ch211-198e13.3 5 si:ch211-198e13.3, transcript variant X1










Genes with expression patterns similar to si:ch211-198e13.3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. si:ch211-198e13.3 5 4 - 1.000 - - 1.000 1.000 - - 1.000 si:ch211-198e13.3, transcript variant X1
2. slc5a5 ENSDARG00000005392 6 2 - - - - 1.000 - - - 1.000 solute carrier family 5 (sodium/iodide cotransporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-060503-585]
3. ccdc24 ENSDARG00000038793 7 2 - - - - 1.000 - - - 1.000 coiled-coil domain containing 24 [Source:ZFIN;Acc:ZDB-GENE-050327-18]
4. zgc:172323 ENSDARG00000053201 1 2 - - - - 1.000 - - - 1.000 zgc:172323 [Source:ZFIN;Acc:ZDB-GENE-080204-113]
5. TMPRSS7 5 1.957 - - - - - 0.957 - - 1.000 transmembrane protease, serine 7
6. CR356223.1 ENSDARG00000093865 1 1.927 - - - - - 0.927 - - 1.000
7. HMGXB3 ENSDARG00000077823 2 1.927 - - - - - 0.927 - - 1.000 HMG box domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-111012-1]
8. grm3 ENSDARG00000031712, ENSDARG00000110535 30 1.878 - 0.878 - - 1.000 - - - - glutamate receptor, metabotropic 3 [Source:ZFIN;Acc:ZDB-GENE-061009-13]
9. guk1b ENSDARG00000005776 23 1.854 - 0.854 - - 1.000 - - - - guanylate kinase 1b [Source:ZFIN;Acc:ZDB-GENE-020916-1]
10. foxi1 ENSDARG00000104566 176 1.805 - 0.878 - - - 0.927 - - - forkhead box i1 [Source:ZFIN;Acc:ZDB-GENE-030505-1]
11. vtg3 ENSDARG00000016448 8 1.805 - 0.878 - - - 0.927 - - - vitellogenin 3, phosvitinless [Source:ZFIN;Acc:ZDB-GENE-991019-2]
12. tprn ENSDARG00000101102 97 1.747 - 0.878 - - - 0.869 - - - taperin [Source:ZFIN;Acc:ZDB-GENE-081104-254]
13. ftr06 ENSDARG00000018506, ENSDARG00000053450 17 1.727 - 0.800 - - - 0.927 - - - finTRIM family, member 6 [Source:ZFIN;Acc:ZDB-GENE-070912-228]
14. bmb ENSDARG00000096603 120 1.685 - 0.880 - - - 0.805 - - - brambleberry [Source:ZFIN;Acc:ZDB-GENE-030131-5577]
15. fbxo15 ENSDARG00000016897 18 1.595 - 0.812 - - - 0.783 - - - F-box protein 15 [Source:ZFIN;Acc:ZDB-GENE-080416-4]
16. rab11fip1a ENSDARG00000046124 69 1.56 - 0.738 - - - 0.822 - - - RAB11 family interacting protein 1 (class I) a [Source:ZFIN;Acc:ZDB-GENE-051113-116]
17. si:ch211-207c6.5 si:ch211-207c6.5 72 1.511 - 0.790 - - - 0.721 - - -
18. ENSDARG00000088389 ENSDARG00000088389 2 1 - - - - 1.000 - - - -
19. clec3ba ENSDARG00000076541 3 1 - - - - - - - - 1.000 C-type lectin domain family 3, member Ba [Source:ZFIN;Acc:ZDB-GENE-110411-71]
20. si:ch73-341k19.1 ENSDARG00000095946 5 1 - - - - - - - - 1.000 si:ch73-341k19.1 [Source:ZFIN;Acc:ZDB-GENE-110411-201]
21. slc47a2 2 1 - - - - - - - - 1.000 solute carrier family 47 (multidrug and toxin extrusion), member 2
22. si:dkey-172k15.6 ENSDARG00000095717 0 1 - - - - 1.000 - - - - si:dkey-172k15.6 [Source:ZFIN;Acc:ZDB-GENE-121214-9]
23. CT027754.1 CT027754.1 0 1 - - - - 1.000 - - - -
24. CDK18 ENSDARG00000012204 5 1 - - - - - - - - 1.000 cyclin dependent kinase 18 [Source:HGNC Symbol;Acc:HGNC:8751]
25. agtr1a ENSDARG00000018616 1 1 - - - - - - - - 1.000 angiotensin II receptor, type 1a [Source:ZFIN;Acc:ZDB-GENE-070912-546]
26. zgc:172131 ENSDARG00000076269 32 1 - - - - 1.000 - - - - zgc:172131 [Source:ZFIN;Acc:ZDB-GENE-080204-47]
27. si:dkey-4j21.1 17 1 - - - - - - - - 1.000 si:dkey-4j21.1, transcript variant X2
28. CR356223.2_1 ENSDARG00000100655 1 1 - - - - 1.000 - - - -
29. vcam1a ENSDARG00000078201 1 1 - - - - - - - - 1.000 vascular cell adhesion molecule 1a [Source:ZFIN;Acc:ZDB-GENE-060503-172]
30. slc18a2 ENSDARG00000015110, ENSDARG00000115207 6 1 - - - - - - - - 1.000 solute carrier family 18 (vesicular monoamine transporter), member 2 [Source:ZFIN;Acc:ZDB-GENE-080514-1]
31. zgc:162724 zgc:162724 9 1 - - - - - - - - 1.000
32. taar20t ENSDARG00000095035 1 1 - - - - 1.000 - - - - trace amine associated receptor 20t [Source:ZFIN;Acc:ZDB-GENE-060414-18]
33. C17H8orf74 C17H8orf74 4 1 - - - - - - - - 1.000
34. CT030048.2 CT030048.2 3 1 - - - - - - - - 1.000
35. si:ch211-214p13.7 1 1 - - - - - - - - 1.000 si:ch211-214p13.7
36. si:dkey-150h13.1 si:dkey-150h13.1 1 1 - - - - - - - - 1.000
37. CR352258.1 CR352258.1 3 1 - - - - 1.000 - - - -
38. LIX1 ENSDARG00000052154 9 1 - - - - - - - - 1.000 limb and CNS expressed 1 [Source:ZFIN;Acc:ZDB-GENE-060526-123]
39. si:ch73-27e22.2 ENSDARG00000092266 8 1 - - - - 1.000 - - - - si:ch73-27e22.2 [Source:ZFIN;Acc:ZDB-GENE-070705-230]
40. mybpc2a ENSDARG00000030157 11 1 - - - - - - - - 1.000 myosin binding protein C, fast type a [Source:ZFIN;Acc:ZDB-GENE-060901-1]
41. NPM2 NPM2 41 1 - - - - - - - - 1.000
42. PDE6H 3 1 - - - - - - - - 1.000 phosphodiesterase 6H, cGMP-specific, cone, gamma, transcript variant 2
43. si:dkey-274m14.3 si:dkey-274m14.3 7 1 - - - - - - - - 1.000
44. si:dkey-188i13.8 ENSDARG00000092725 1 1 - - - - - - - - 1.000 si:dkey-188i13.8 [Source:ZFIN;Acc:ZDB-GENE-090312-93]
45. CDR2_1 CDR2_1 8 1 - - - - - - - - 1.000
46. ttc6 ENSDARG00000104125 7 1 - - - - - - - - 1.000 tetratricopeptide repeat domain 6 [Source:ZFIN;Acc:ZDB-GENE-090429-2]
47. rbm22 ENSDARG00000010238 523 1 - - - - 1.000 - - - - RNA binding motif protein 22 [Source:ZFIN;Acc:ZDB-GENE-040426-2298]
48. MMP25 MMP25 0 1 - - - - 1.000 - - - -
49. ptger2a ENSDARG00000011434 6 1 - - - - - - - - 1.000 prostaglandin E receptor 2a (subtype EP2) [Source:ZFIN;Acc:ZDB-GENE-040426-1321]
50. FP103003.1_1 FP103003.1_1 6 1 - - - - - - - - 1.000
51. si:dkey-179k24.6 si:dkey-179k24.6 5 1 - - - - - - - - 1.000
52. scn1a 8 1 - - - - - - - - 1.000 sodium channel, voltage-gated, type I, alpha, transcript variant X1
53. ftr55 ENSDARG00000009161 3 1 - - - - 1.000 - - - - finTRIM family, member 55 [Source:ZFIN;Acc:ZDB-GENE-070424-161]
54. CU302316.1 ENSDARG00000109600 2 1 - - - - - - - - 1.000
55. ssh1a ENSDARG00000056780 3 1 - - - - 1.000 - - - - slingshot protein phosphatase 1a [Source:ZFIN;Acc:ZDB-GENE-040724-201]
56. CABZ01030692.1 CABZ01030692.1 0 1 - - - - - - - - 1.000
57. trim35-21 ENSDARG00000102303 7 1 - - - - 1.000 - - - - tripartite motif containing 35-21 [Source:ZFIN;Acc:ZDB-GENE-060503-673]
58. cyp2n13 ENSDARG00000042953 10 1 - - - - - - - - 1.000 cytochrome P450, family 2, subfamily N, polypeptide 13 [Source:ZFIN;Acc:ZDB-GENE-041001-158]
59. rdh14a ENSDARG00000039299 79 1 - - - - - 1.000 - - - retinol dehydrogenase 14a [Source:ZFIN;Acc:ZDB-GENE-041010-124]
60. si:ch211-254p10.2 ENSDARG00000056750 3 1 - - - - - - - - 1.000 si:ch211-254p10.2 [Source:ZFIN;Acc:ZDB-GENE-100922-17]
61. trpm3 ENSDARG00000039181 2 1 - - - - 1.000 - - - - transient receptor potential cation channel, subfamily M, member 3 [Source:ZFIN;Acc:ZDB-GENE-060531-95]
62. si:ch73-17k20.1 si:ch73-17k20.1 2 1 - - - - 1.000 - - - -
63. si:dkeyp-73d8.12 si:dkeyp-73d8.12 0 1 - - - - 1.000 - - - -
64. si:ch73-94f11.5 si:ch73-94f11.5 6 1 - - - - 1.000 - - - -
65. si:dkey-14d8.1 ENSDARG00000095332 11 1 - - - - - - - - 1.000 si:dkey-14d8.1 [Source:ZFIN;Acc:ZDB-GENE-041210-86]
66. CR318624.1 ENSDARG00000094618 5 1 - - - - - - - - 1.000
67. slc15a1b ENSDARG00000044528 6 1 - - - - - - - - 1.000 solute carrier family 15 (oligopeptide transporter), member 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4661]
68. si:dkey-149m13.2 si:dkey-149m13.2 1 1 - - - - - - - - 1.000
69. sele ENSDARG00000009123 122 1 - - - - 1.000 - - - - selectin E [Source:ZFIN;Acc:ZDB-GENE-041014-221]
70. nudt4b ENSDARG00000045878 10 1 - - - - 1.000 - - - - nudix (nucleoside diphosphate linked moiety X)-type motif 4b [Source:ZFIN;Acc:ZDB-GENE-040912-79]
71. htr5al htr5al 6 1 - - - - - - - - 1.000
72. si:ch211-120f16.3 si:ch211-120f16.3 0 1 - - - - 1.000 - - - -
73. si:ch1073-109g21.1 si:ch1073-109g21.1 0 1 - - - - - - - - 1.000
74. CU633740.1 CU633740.1 8 1 - - - - 1.000 - - - -
75. si:dkey-286j17.3 si:dkey-286j17.3 8 1 - - - - 1.000 - - - -
76. mlphb ENSDARG00000062481 14 1 - - - - 1.000 - - - - melanophilin b [Source:ZFIN;Acc:ZDB-GENE-070803-2]
77. BX927130.1 ENSDARG00000099328 7 1 - - - - - - - - 1.000 si:dkey-27n6.5 [Source:NCBI gene;Acc:557869]
78. cdc14aa ENSDARG00000013858 18 1 - - - - - - - - 1.000 cell division cycle 14Aa [Source:ZFIN;Acc:ZDB-GENE-040426-1214]
79. CT737184.1 ENSDARG00000102726 0 1 - - - - - - - - 1.000
80. si:dkey-252l8.1 si:dkey-252l8.1 2 1 - - - - 1.000 - - - -
81. CABZ01074669.1 CABZ01074669.1 12 1 - - - - - - - - 1.000
82. si:rp71-7l19.6 si:rp71-7l19.6 12 1 - - - - - - - - 1.000
83. BX546446.1 BX546446.1 0 1 - - - - 1.000 - - - -
84. BX119910.4 BX119910.4 0 1 - - - - - - - - 1.000
85. SLCO2B1 ENSDARG00000054609 0 1 - - - - - - - - 1.000 solute carrier organic anion transporter family, member 2B1 [Source:ZFIN;Acc:ZDB-GENE-051023-6]
86. zgc:92161 ENSDARG00000101749 27 1 - - - - - - - - 1.000 zgc:92161 [Source:ZFIN;Acc:ZDB-GENE-040912-22]
87. FP102016.2 FP102016.2 0 1 - - - - - - - - 1.000
88. MEI1 MEI1 2 1 - - - - - - - - 1.000
89. CSF3 CSF3 4 1 - - - - 1.000 - - - -
90. KIAA0319 KIAA0319 2 1 - - - - - - - - 1.000
91. edn3b ENSDARG00000086669 8 1 - - - - 1.000 - - - - endothelin 3b [Source:ZFIN;Acc:ZDB-GENE-090313-235]
92. grid2 ENSDARG00000055302, ENSDARG00000110593 1 1 - - - - - - - - 1.000 glutamate receptor, ionotropic, delta 2 [Source:ZFIN;Acc:ZDB-GENE-040913-1]
93. cpdb ENSDARG00000053877 5 1 - - - - 1.000 - - - - carboxypeptidase D, b [Source:ZFIN;Acc:ZDB-GENE-060929-1270]
94. BX511034.1_1 ENSDARG00000071629 0 1 - - - - - - - - 1.000
95. CR774179.1 ENSDARG00000086969 3 1 - - - - - - - - 1.000
96. si:ch73-27e22.3 ENSDARG00000077263 10 1 - - - - - - - - 1.000 si:ch73-27e22.3 [Source:ZFIN;Acc:ZDB-GENE-070705-231]
97. BX842593.1 BX842593.1 0 1 - - - - 1.000 - - - -
98. U1_16 U1_16 0 1 - - - - 1.000 - - - -
99. EPM2AIP1 EPM2AIP1 4 1 - - - - - - - - 1.000
100. RBBP6_3 RBBP6_3 34 1 - - - - - - - - 1.000

There are 885 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA