Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for si:ch211-152f6.6

Gene Name Gene ID Reads Annotation
si:ch211-152f6.6 si:ch211-152f6.6 278










Genes with expression patterns similar to si:ch211-152f6.6

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. si:ch211-152f6.6 si:ch211-152f6.6 278 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000
2. nes ENSDARG00000088805 2710 3.994 0.830 0.842 - - - 0.829 0.791 0.702 - nestin [Source:ZFIN;Acc:ZDB-GENE-071119-2]
3. gng3 ENSDARG00000009553 2530 3.548 0.927 0.964 - - - 0.838 0.819 - - guanine nucleotide binding protein (G protein), gamma 3 [Source:ZFIN;Acc:ZDB-GENE-010705-1]
4. GJD2_1 GJD2_1 3045 3.527 0.841 0.946 - - - 0.791 0.949 - -
5. scn8aa ENSDARG00000005775 792 3.493 0.922 0.867 - - - 0.751 0.953 - - sodium channel, voltage gated, type VIII, alpha subunit a [Source:ZFIN;Acc:ZDB-GENE-000828-1]
6. rbfox3 rbfox3 1443 3.462 0.844 0.885 - - - 0.809 0.924 - -
7. sv2bb ENSDARG00000060711 196 3.438 0.779 0.912 - - - 0.888 0.859 - - synaptic vesicle glycoprotein 2Bb [Source:ZFIN;Acc:ZDB-GENE-030131-2789]
8. scn2b ENSDARG00000101713 796 3.433 0.784 0.959 - - - 0.856 0.834 - - sodium channel, voltage-gated, type II, beta [Source:ZFIN;Acc:ZDB-GENE-070920-1]
9. stx1b ENSDARG00000000503 2724 3.42 0.866 0.901 - - - 0.767 0.886 - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
10. gpr85 ENSDARG00000068701, ENSDARG00000116501 372 3.402 - 0.945 - - - 0.745 0.892 0.820 - G protein-coupled receptor 85 [Source:ZFIN;Acc:ZDB-GENE-000710-2]
11. syngr3a ENSDARG00000014871 405 3.4 0.907 0.754 - - - 0.878 0.861 - - synaptogyrin 3a [Source:ZFIN;Acc:ZDB-GENE-050522-541]
12. dbx2 2971 3.386 0.931 0.807 - - - 0.778 0.870 - - developing brain homeobox 2
13. jag1a ENSDARG00000030289 1275 3.361 0.888 0.881 - - - 0.748 0.844 - - jagged 1a [Source:ZFIN;Acc:ZDB-GENE-011128-2]
14. CHL1 CHL1 1553 3.353 0.756 0.842 - - - 0.852 0.903 - -
15. NTRK3 NTRK3 163 3.348 0.812 0.946 - - - - 0.853 0.737 -
16. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 3.344 0.873 - - - - 0.817 0.931 - 0.723 cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
17. nova2 ENSDARG00000017673 7685 3.343 0.827 0.829 - - - 0.839 0.848 - - neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
18. slc8a2b ENSDARG00000100592 598 3.332 0.845 0.721 - - - 0.872 0.894 - - solute carrier family 8 (sodium/calcium exchanger), member 2b [Source:ZFIN;Acc:ZDB-GENE-050419-209]
19. snap25a ENSDARG00000020609 4537 3.316 0.871 0.899 - - - 0.721 0.825 - - synaptosomal-associated protein, 25a [Source:ZFIN;Acc:ZDB-GENE-980526-468]
20. KCNAB2 KCNAB2 129 3.309 0.817 0.946 - - - - 0.823 0.723 -
21. slc1a2b ENSDARG00000102453 3136 3.288 0.811 0.821 - - - 0.734 0.922 - - solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
22. si:dkey-169l5.3 si:dkey-169l5.3 239 3.279 0.877 - - - - 0.848 0.837 - 0.717
23. lhx1a ENSDARG00000014018 958 3.278 0.814 0.850 - - - 0.815 0.799 - - LIM homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-980526-347]
24. slc32a1 ENSDARG00000059775 1092 3.27 0.754 0.875 - - - 0.741 0.900 - - solute carrier family 32 (GABA vesicular transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-061201-1]
25. RBPMS ENSDARG00000099396 61 3.262 - 0.888 0.701 - 0.732 - 0.941 - - RNA binding protein, mRNA processing factor [Source:ZFIN;Acc:ZDB-GENE-161017-145]
26. nadl1.1 1200 3.232 0.904 0.769 - - - 0.781 0.778 - - neural adhesion molecule L1.1, transcript variant X1
27. GLRA3 ENSDARG00000011066 242 3.216 0.741 0.764 - - - 0.828 0.883 - - glycine receptor, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-020402-1]
28. map1aa ENSDARG00000059601 599 3.207 0.834 - - - - 0.867 0.805 0.701 - microtubule-associated protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-100426-2]
29. gap43 ENSDARG00000099744 4114 3.207 0.881 0.775 - - - - 0.849 - 0.702 growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
30. tuba1c ENSDARG00000055216 8384 3.19 0.894 - - - - 0.731 0.848 - 0.717 tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
31. dpysl3 ENSDARG00000002587 4381 3.187 0.843 - - - - 0.800 0.832 - 0.712 dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
32. TUBB8P7_2 TUBB8P7_2 565 3.185 0.865 - - - 0.735 0.781 0.804 - -
33. CABZ01029738.1 CABZ01029738.1 327 3.163 0.757 0.750 - - - 0.860 0.796 - -
34. syt4 ENSDARG00000036505 421 3.16 0.799 0.762 - - - 0.770 0.829 - - synaptotagmin IV [Source:ZFIN;Acc:ZDB-GENE-030131-7297]
35. TUBB8P7_1 TUBB8P7_1 2722 3.132 0.923 0.736 - - - 0.707 0.766 - -
36. elavl4 ENSDARG00000045639 998 3.088 0.766 - - - - 0.827 0.793 - 0.702 ELAV like neuron-specific RNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-990415-246]
37. tmem35 ENSDARG00000052567 5685 3.081 0.819 - - - - 0.776 0.758 - 0.728 transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
38. lgi1a ENSDARG00000020493 1218 3.065 0.704 0.770 - - - 0.852 - 0.739 - leucine-rich, glioma inactivated 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1731]
39. slc18a3a ENSDARG00000006356 1285 3.064 0.722 0.716 - - - 0.770 0.856 - - solute carrier family 18 (vesicular acetylcholine transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-060929-990]
40. SEMA7A ENSDARG00000078707 465 3.037 0.776 - - - - 0.710 0.780 0.771 - semaphorin 7A [Source:ZFIN;Acc:ZDB-GENE-030131-3633]
41. rufy3 ENSDARG00000029692 3031 2.997 0.771 0.732 - - - 0.755 0.739 - - RUN and FYVE domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-050327-58]
42. nrarpb ENSDARG00000018958 6225 2.996 0.733 - - - - 0.721 0.834 - 0.708 NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
43. sept5a ENSDARG00000013843 1206 2.961 0.730 - - - - 0.771 0.705 0.755 - septin 5a [Source:ZFIN;Acc:ZDB-GENE-030131-7868]
44. slc17a6b ENSDARG00000041150 823 2.758 0.884 0.946 - - - - 0.928 - - solute carrier family 17 (vesicular glutamate transporter), member 6b [Source:ZFIN;Acc:ZDB-GENE-030616-554]
45. amph ENSDARG00000007663 599 2.73 0.850 0.959 - - - - 0.921 - - amphiphysin [Source:ZFIN;Acc:ZDB-GENE-040426-1711]
46. clstn3 ENSDARG00000073883 590 2.68 0.861 - - - - 0.896 0.923 - - calsyntenin 3 [Source:ZFIN;Acc:ZDB-GENE-100921-73]
47. syt11a ENSDARG00000057913 1145 2.676 0.946 0.958 - - - - 0.772 - - synaptotagmin XIa [Source:ZFIN;Acc:ZDB-GENE-040426-2815]
48. sypb ENSDARG00000002230 262 2.674 0.904 - - - - 0.851 0.919 - - synaptophysin b [Source:ZFIN;Acc:ZDB-GENE-040718-205]
49. scg5 ENSDARG00000032126, ENSDARG00000077045 29 2.67 0.841 0.946 0.883 - - - - - - secretogranin V [Source:ZFIN;Acc:ZDB-GENE-040426-1687]
50. scrt2 ENSDARG00000056175 4331 2.664 0.831 0.901 - - - - 0.932 - - scratch family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4097]
51. MAP1A MAP1A 847 2.655 0.917 0.854 - - - - 0.884 - -
52. bhlhe22 ENSDARG00000058039 1673 2.653 0.914 - - - - 0.964 0.775 - - basic helix-loop-helix family, member e22 [Source:ZFIN;Acc:ZDB-GENE-040426-1411]
53. NPAS3 ENSDARG00000109820 362 2.627 0.745 0.946 - - - 0.936 - - - neuronal PAS domain protein 3 [Source:HGNC Symbol;Acc:HGNC:19311]
54. pax6a ENSDARG00000103379 3061 2.615 0.901 - - - - 0.793 0.921 - - paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
55. SPOCK1 ENSDARG00000074644 794 2.603 0.949 - - - - 0.828 0.826 - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [Source:ZFIN;Acc:ZDB-GENE-110428-1]
56. APBB3 ENSDARG00000053771 654 2.601 0.868 - - - - 0.954 0.779 - - amyloid beta (A4) precursor protein-binding, family B, member 3 [Source:ZFIN;Acc:ZDB-GENE-140106-53]
57. FRRS1L ENSDARG00000103940 224 2.589 - - - - - 0.807 0.932 0.850 - ferric-chelate reductase 1-like [Source:ZFIN;Acc:ZDB-GENE-120827-1]
58. TUBB8P7 TUBB8P7 1353 2.587 0.890 0.786 - - - 0.911 - - -
59. rusc1 ENSDARG00000078125 617 2.584 0.876 - - - - 0.787 0.921 - - RUN and SH3 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-100922-274]
60. calb1 ENSDARG00000031598 252 2.582 0.814 0.946 - - - - 0.822 - - calbindin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8107]
61. ntrk2a ENSDARG00000059897 185 2.578 0.885 - - - - 0.770 0.923 - - neurotrophic tyrosine kinase, receptor, type 2a [Source:ZFIN;Acc:ZDB-GENE-010126-1]
62. nat8l ENSDARG00000077256, ENSDARG00000115322 3513 2.569 0.797 - - - - 0.862 0.910 - - N-acetyltransferase 8-like [Source:ZFIN;Acc:ZDB-GENE-030729-4]
63. syt11b ENSDARG00000056105 578 2.564 0.747 0.919 - - - 0.898 - - - synaptotagmin XIb [Source:ZFIN;Acc:ZDB-GENE-090601-7]
64. pcsk1nl ENSDARG00000076170 1232 2.563 0.905 0.870 - - - - 0.788 - - proprotein convertase subtilisin/kexin type 1 inhibitor, like [Source:ZFIN;Acc:ZDB-GENE-090427-2]
65. tmie ENSDARG00000069423 305 2.562 0.855 - - - - 0.787 0.920 - - transmembrane inner ear [Source:ZFIN;Acc:ZDB-GENE-061207-9]
66. CABZ01111990.1 CABZ01111990.1 4374 2.558 0.824 - - - - 0.849 0.885 - -
67. C8H1orf106 C8H1orf106 2690 2.556 0.898 - - - - 0.878 0.780 - -
68. sox19b ENSDARG00000040266 532 2.552 0.917 - - - - 0.806 0.829 - - SRY (sex determining region Y)-box 19b [Source:ZFIN;Acc:ZDB-GENE-010111-1]
69. lbx1b ENSDARG00000018611 399 2.55 0.890 0.922 - - - 0.738 - - - ladybird homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-050309-27]
70. neurog1 ENSDARG00000056130 3924 2.549 0.830 - - - - 0.846 0.873 - - neurogenin 1 [Source:ZFIN;Acc:ZDB-GENE-990415-174]
71. MAP6 MAP6 643 2.549 0.821 0.979 - - - - 0.749 - -
72. atp1a3a ENSDARG00000018259 5393 2.548 0.883 0.775 - - - 0.890 - - - ATPase Na+/K+ transporting subunit alpha 3a [Source:ZFIN;Acc:ZDB-GENE-001212-7]
73. hpca ENSDARG00000018397, ENSDARG00000110115 3866 2.541 0.882 0.795 - - - - 0.864 - - hippocalcin [Source:ZFIN;Acc:ZDB-GENE-040426-1683]
74. AGO1 ENSDARG00000092644 4521 2.536 0.802 - - - - 0.830 0.904 - - argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
75. STMN3 ENSDARG00000038465 1009 2.533 0.813 - - - - 0.826 0.894 - - stathmin-like 3 [Source:ZFIN;Acc:ZDB-GENE-081124-2]
76. rtn1b ENSDARG00000021143 1682 2.529 0.910 0.832 - - - - 0.787 - - reticulon 1b [Source:ZFIN;Acc:ZDB-GENE-030710-3]
77. prdm14 ENSDARG00000045371 106 2.527 - 0.946 - - - 0.782 0.799 - - PR domain containing 14 [Source:ZFIN;Acc:ZDB-GENE-030131-2709]
78. SKOR2 SKOR2 1041 2.525 0.828 - - - - 0.774 0.923 - -
79. TUSC5 TUSC5 1436 2.521 0.772 0.837 - - - - 0.912 - -
80. LINGO2 LINGO2 300 2.521 - - 0.827 - - - 0.902 0.792 -
81. jagn1a ENSDARG00000041071, ENSDARG00000109427 397 2.519 0.831 0.845 - - - - 0.843 - - jagunal homolog 1a [Source:ZFIN;Acc:ZDB-GENE-041010-80]
82. stmn2a ENSDARG00000033234 2272 2.519 0.846 0.812 - - - - 0.861 - - stathmin 2a [Source:ZFIN;Acc:ZDB-GENE-041010-85]
83. nlgn3b ENSDARG00000062376 171 2.517 - - - - 0.720 0.897 0.900 - - neuroligin 3b [Source:ZFIN;Acc:ZDB-GENE-060526-197]
84. nefmb ENSDARG00000043697 2052 2.516 0.932 - - - - 0.832 0.752 - - neurofilament, medium polypeptide b [Source:ZFIN;Acc:ZDB-GENE-070103-4]
85. dusp3a ENSDARG00000061255, ENSDARG00000113934 328 2.511 0.794 0.959 - - - - - 0.758 - dual specificity phosphatase 3a [Source:ZFIN;Acc:ZDB-GENE-111207-3]
86. vsnl1a ENSDARG00000023228 1584 2.509 0.883 0.838 - - - - 0.788 - - visinin-like 1a [Source:ZFIN;Acc:ZDB-GENE-041001-211]
87. sox19a ENSDARG00000010770, ENSDARG00000110497 4683 2.506 0.824 - - - - 0.788 0.894 - - SRY (sex determining region Y)-box 19a [Source:ZFIN;Acc:ZDB-GENE-980526-102]
88. dnajc5aa ENSDARG00000042948 2885 2.506 0.830 - - - - 0.807 0.869 - - DnaJ (Hsp40) homolog, subfamily C, member 5aa [Source:ZFIN;Acc:ZDB-GENE-031113-20]
89. lingo1a ENSDARG00000034165 179 2.504 - 0.946 0.757 - - - 0.801 - - leucine rich repeat and Ig domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-080327-16]
90. SHANK1 ENSDARG00000060539 102 2.503 0.870 - - - - 0.739 0.894 - - SH3 and multiple ankyrin repeat domains 1 [Source:ZFIN;Acc:ZDB-GENE-130530-691]
91. si:ch73-21g5.7 ENSDARG00000093156 9412 2.501 0.826 0.808 - - - - 0.867 - - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
92. irx1b ENSDARG00000056594 2224 2.5 0.832 - - - - 0.810 0.858 - - iroquois homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-010716-1]
93. b3gat2 ENSDARG00000030733 348 2.495 0.801 - - - - - 0.882 0.812 - beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S) [Source:ZFIN;Acc:ZDB-GENE-040801-191]
94. cspg5a ENSDARG00000069981 1699 2.493 0.865 - - - - 0.803 0.825 - - chondroitin sulfate proteoglycan 5a [Source:ZFIN;Acc:ZDB-GENE-080425-4]
95. rheb ENSDARG00000090213 1432 2.493 0.826 - - - - 0.889 0.778 - - Ras homolog, mTORC1 binding [Source:ZFIN;Acc:ZDB-GENE-040426-1690]
96. zbtb20 ENSDARG00000005586 195 2.492 - 0.946 - - - 0.822 0.724 - - zinc finger and BTB domain containing 20 [Source:ZFIN;Acc:ZDB-GENE-070112-1992]
97. EFCC1 ENSDARG00000077826 1359 2.492 0.910 - - - - 0.798 0.784 - - EF-hand and coiled-coil domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-120813-3]
98. epha4b ENSDARG00000011600 3110 2.49 0.838 - - - - 0.810 0.842 - - eph receptor A4b [Source:ZFIN;Acc:ZDB-GENE-030826-6]
99. kcnd1 ENSDARG00000074746 153 2.487 0.873 - - - - 0.725 0.889 - - potassium voltage-gated channel, Shal-related subfamily, member 1 [Source:ZFIN;Acc:ZDB-GENE-081105-40]
100. mark4a ENSDARG00000023914, ENSDARG00000112220 445 2.485 - - - - - 0.917 0.779 0.789 - MAP/microtubule affinity-regulating kinase 4a [Source:ZFIN;Acc:ZDB-GENE-060531-156]

There are 2290 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA