Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for si:ch1073-429i10.3

Gene Name Gene ID Reads Annotation
si:ch1073-429i10.3 75111 si:ch1073-429i10.3, transcript variant X2










Genes with expression patterns similar to si:ch1073-429i10.3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. si:ch1073-429i10.3 75111 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 si:ch1073-429i10.3, transcript variant X2
2. hes6 ENSDARG00000019335 4754 1.613 - - - 0.703 - - 0.910 - - hes family bHLH transcription factor 6 [Source:ZFIN;Acc:ZDB-GENE-030828-5]
3. ywhaba ENSDARG00000013078 42000 1.611 - - - 0.758 0.853 - - - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide a [Source:ZFIN;Acc:ZDB-GENE-030131-6583]
4. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 50840 1.565 - - - 0.825 - - - 0.740 - H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
5. calm2a ENSDARG00000031427, ENSDARG00000111871 43643 1.562 - - - 0.858 - 0.704 - - - calmodulin 2a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030804-3]
6. h2afvb ENSDARG00000116491 35692 1.548 - - - - - - - 0.779 0.769 H2A histone family, member Vb [Source:ZFIN;Acc:ZDB-GENE-050506-24]
7. rpl26 ENSDARG00000102317 154515 1.52 - - 0.712 - - - 0.808 - - ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
8. cdk1 ENSDARG00000087554, ENSDARG00000110840 8297 1.507 - - - - - - - 0.755 0.752 cyclin-dependent kinase 1 [Source:ZFIN;Acc:ZDB-GENE-010320-1]
9. h3f3d ENSDARG00000045248 43757 1.504 - - - 0.705 - - - 0.799 - H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
10. sfpq ENSDARG00000011564, ENSDARG00000115611 15626 1.479 - - - 0.768 - - - - 0.711 splicing factor proline/glutamine-rich [Source:ZFIN;Acc:ZDB-GENE-040426-2452]
11. SNRPG ENSDARG00000099667 18697 1.476 - - - 0.749 - - - - 0.727 small nuclear ribonucleoprotein polypeptide G [Source:ZFIN;Acc:ZDB-GENE-040912-105]
12. FP085405.1 FP085405.1 5189 1.474 - - - 0.734 - - - - 0.740
13. TUBA1A ENSDARG00000001889 25294 1.472 - 0.751 - 0.721 - - - - - tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
14. marcksl1b ENSDARG00000035715 37390 1.452 - - - 0.749 - - - - 0.703 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
15. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 72444 1.44 - - - - - - - 0.720 0.720 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
16. nucks1a ENSDARG00000078473 28285 1.434 0.733 - - - - - - 0.701 - nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
17. eif3f ENSDARG00000077533 24387 1.417 - - - 0.711 0.706 - - - - eukaryotic translation initiation factor 3, subunit F [Source:ZFIN;Acc:ZDB-GENE-100215-2]
18. cox4i1 ENSDARG00000032970 53784 0.978 - - - - - - 0.978 - - cytochrome c oxidase subunit 4I1 [Source:ZFIN;Acc:ZDB-GENE-030131-5175]
19. rps3a ENSDARG00000035692, ENSDARG00000114628, ENSDARG00000115378 61276 0.976 - - - - - - 0.976 - - ribosomal protein S3A [Source:ZFIN;Acc:ZDB-GENE-030131-9184]
20. impdh1b ENSDARG00000029524 7472 0.976 - - - - - - 0.976 - - IMP (inosine 5'-monophosphate) dehydrogenase 1b [Source:ZFIN;Acc:ZDB-GENE-030219-206]
21. CABZ01111496.1 ENSDARG00000003041 15566 0.971 - - - - - - 0.971 - - E3 ubiquitin-protein ligase pellino homolog 2-like [Source:NCBI gene;Acc:100334245]
22. nr2f6a ENSDARG00000003607 4779 0.934 - - - - 0.934 - - - - nuclear receptor subfamily 2, group F, member 6a [Source:ZFIN;Acc:ZDB-GENE-030131-4362]
23. wls ENSDARG00000009534 8719 0.918 - - - - 0.918 - - - - wntless Wnt ligand secretion mediator [Source:ZFIN;Acc:ZDB-GENE-040426-2161]
24. rpl5a ENSDARG00000020197 35209 0.917 - - - - - - 0.917 - - ribosomal protein L5a [Source:ZFIN;Acc:ZDB-GENE-030131-5161]
25. hp1bp3 ENSDARG00000044669 23708 0.916 - - - - - - 0.916 - - heterochromatin protein 1, binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-060810-79]
26. rpn1 ENSDARG00000059323 10411 0.916 - - - - - - 0.916 - - ribophorin I [Source:ZFIN;Acc:ZDB-GENE-030131-4286]
27. kars ENSDARG00000103799 20937 0.912 - - - - - - 0.912 - - lysyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-021115-8]
28. ARID3C ENSDARG00000067729, ENSDARG00000114447 8069 0.911 - - - - - - 0.911 - - AT rich interactive domain 3C (BRIGHT-like) [Source:ZFIN;Acc:ZDB-GENE-060526-12]
29. XPR1 XPR1 3354 0.91 - - - - - - 0.910 - -
30. C7H16orf87 C7H16orf87 5197 0.91 - - - - - - 0.910 - -
31. CR293507.1 ENSDARG00000112572 3198 0.91 - - - - - - 0.910 - -
32. twf1a ENSDARG00000115712 3465 0.91 - - - - - - 0.910 - - twinfilin actin-binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-4402]
33. RB1CC1 ENSDARG00000076559 2771 0.91 - - - - - - 0.910 - - RB1-inducible coiled-coil 1 [Source:ZFIN;Acc:ZDB-GENE-130206-1]
34. csrp1a ENSDARG00000006603 5188 0.91 - - - - - - 0.910 - - cysteine and glycine-rich protein 1a [Source:ZFIN;Acc:ZDB-GENE-030909-4]
35. VMA21 ENSDARG00000093945, ENSDARG00000113532 7555 0.91 - - - - - - 0.910 - - VMA21 vacuolar H+-ATPase homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-081104-272]
36. rnf20 ENSDARG00000016664 3641 0.91 - - - - - - 0.910 - - ring finger protein 20, E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-130404-2]
37. cers2a ENSDARG00000013704 4239 0.909 - - - - - - 0.909 - - ceramide synthase 2a [Source:ZFIN;Acc:ZDB-GENE-020808-2]
38. si:dkey-42p8.3 1117 0.909 - - - - - - 0.909 - - si:dkey-42p8.3, transcript variant X1
39. tmem5 1630 0.909 - - - - - - 0.909 - - transmembrane protein 5
40. epdl1 ENSDARG00000076386 1747 0.909 - - - - - - 0.909 - - ependymin-like 1 [Source:ZFIN;Acc:ZDB-GENE-090710-3]
41. smurf2 ENSDARG00000038067 2057 0.909 - - - - - - 0.909 - - SMAD specific E3 ubiquitin protein ligase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1830]
42. rps26 ENSDARG00000037071 40061 0.909 - - - - - - 0.909 - - ribosomal protein S26 [Source:ZFIN;Acc:ZDB-GENE-030131-8606]
43. pdlim4 ENSDARG00000068973 2567 0.909 - - - - - - 0.909 - - PDZ and LIM domain 4 [Source:ZFIN;Acc:ZDB-GENE-070308-5]
44. acat2 ENSDARG00000007127 3052 0.909 - - - - - - 0.909 - - acetyl-CoA acetyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-990714-22]
45. st14a ENSDARG00000061173 3800 0.909 - - - - - - 0.909 - - suppression of tumorigenicity 14 (colon carcinoma) a [Source:ZFIN;Acc:ZDB-GENE-030131-6496]
46. slc22a7a ENSDARG00000056028 2426 0.909 - - - - - - 0.909 - - solute carrier family 22 (organic anion transporter), member 7a [Source:ZFIN;Acc:ZDB-GENE-050506-52]
47. si:ch211-166a6.5 ENSDARG00000079745 11111 0.908 - - - - - - 0.908 - - si:ch211-166a6.5 [Source:ZFIN;Acc:ZDB-GENE-030131-9913]
48. rps29 ENSDARG00000041232 71334 0.907 - - - - - - 0.907 - - ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
49. nutf2 ENSDARG00000056531, ENSDARG00000115472 17177 0.907 - - - - - - 0.907 - - nuclear transport factor 2 [Source:ZFIN;Acc:ZDB-GENE-041010-77]
50. matn3a ENSDARG00000069245 2410 0.906 - - - - - - 0.906 - - matrilin 3a [Source:ZFIN;Acc:ZDB-GENE-040822-21]
51. sucla2 ENSDARG00000005359 5992 0.906 - - - - - - 0.906 - - succinate-CoA ligase, ADP-forming, beta subunit [Source:ZFIN;Acc:ZDB-GENE-040426-1963]
52. serp1 ENSDARG00000099439 23682 0.905 - - - - - - 0.905 - - stress-associated endoplasmic reticulum protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8741]
53. SAMD4A ENSDARG00000075759 3282 0.905 - - - - - - 0.905 - - sterile alpha motif domain containing 4A [Source:ZFIN;Acc:ZDB-GENE-070720-7]
54. neb ENSDARG00000032630, ENSDARG00000109273 19493 0.903 - - - - - - 0.903 - - nebulin [Source:ZFIN;Acc:ZDB-GENE-041111-216]
55. ube2a ENSDARG00000098466 12765 0.902 - - - - 0.902 - - - - ubiquitin-conjugating enzyme E2A (RAD6 homolog) [Source:ZFIN;Acc:ZDB-GENE-030616-72]
56. COL2A1 COL2A1 18161 0.898 - - - - - - 0.898 - -
57. actn3b ENSDARG00000001431 15747 0.897 - - - - - - 0.897 - - actinin alpha 3b [Source:ZFIN;Acc:ZDB-GENE-030131-2040]
58. murca murca 6614 0.894 - - - - - - 0.894 - -
59. prmt5 ENSDARG00000079605, ENSDARG00000116785 4676 0.891 - - - - 0.891 - - - - protein arginine methyltransferase 5 [Source:ZFIN;Acc:ZDB-GENE-030616-585]
60. cyp20a1 ENSDARG00000006040 2570 0.882 - - - - 0.882 - - - - cytochrome P450, family 20, subfamily A, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2646]
61. epb41l5 ENSDARG00000032324, ENSDARG00000114579 1610 0.878 - - - - 0.878 - - - - erythrocyte membrane protein band 4.1 like 5 [Source:ZFIN;Acc:ZDB-GENE-030616-450]
62. zgc:86709 ENSDARG00000110511, ENSDARG00000111417 22785 0.872 - - - - - - 0.872 - - zgc:86709 [Source:ZFIN;Acc:ZDB-GENE-040625-35]
63. fgg ENSDARG00000037281, ENSDARG00000114705 10817 0.846 - - - - - - 0.846 - - fibrinogen gamma chain [Source:ZFIN;Acc:ZDB-GENE-040426-1998]
64. ckmt1 ENSDARG00000016598, ENSDARG00000113143 15024 0.836 - - - - - - 0.836 - - creatine kinase, mitochondrial 1 [Source:ZFIN;Acc:ZDB-GENE-030131-611]
65. rps2 ENSDARG00000077291 105394 0.826 - - - - 0.826 - - - - ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
66. setbp1 ENSDARG00000093799 4499 0.818 - - - - 0.818 - - - - SET binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-060526-72]
67. calm3a_1 ENSDARG00000015050, ENSDARG00000100825 46072 0.814 - - - 0.814 - - - - - calmodulin 3a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030131-5590]
68. ppiab ENSDARG00000103994 47491 0.812 - - - 0.812 - - - - - peptidylprolyl isomerase Ab (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-7459]
69. plk1 ENSDARG00000058471, ENSDARG00000111745 7020 0.809 - - - 0.809 - - - - - polo-like kinase 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-021115-7]
70. spna2 28368 0.806 - - - - - - 0.806 - - spectrin alpha 2, transcript variant X12
71. mthfd1l ENSDARG00000042221, ENSDARG00000110473 19571 0.806 - - - - - - 0.806 - - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like [Source:ZFIN;Acc:ZDB-GENE-041001-133]
72. RPL29 ENSDARG00000077717 88791 0.805 - - - - - 0.805 - - - ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
73. sumo3a ENSDARG00000028119 13447 0.803 - - - 0.803 - - - - - small ubiquitin-like modifier 3a [Source:ZFIN;Acc:ZDB-GENE-040426-2133]
74. RPL37A RPL37A 62256 0.802 - - - 0.802 - - - - -
75. cfl1 ENSDARG00000021124 78399 0.802 - - - - - - - 0.802 - cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
76. zgc:174906 ENSDARG00000075314 2187 0.799 - - - - 0.799 - - - - zgc:174906 [Source:ZFIN;Acc:ZDB-GENE-030131-6125]
77. dpy30 ENSDARG00000004427 7112 0.799 - - - 0.799 - - - - - dpy-30 histone methyltransferase complex regulatory subunit [Source:ZFIN;Acc:ZDB-GENE-040718-136]
78. ptrfa ptrfa 4363 0.797 - - - - - - 0.797 - -
79. tubb5 ENSDARG00000037997 18691 0.796 - - - - 0.796 - - - - tubulin, beta 5 [Source:ZFIN;Acc:ZDB-GENE-031110-4]
80. oaz1b ENSDARG00000104782 37623 0.796 - - - 0.796 - - - - - ornithine decarboxylase antizyme 1b [Source:ZFIN;Acc:ZDB-GENE-020731-5]
81. hdac1 ENSDARG00000015427 19804 0.795 - - - - - - - - 0.795 histone deacetylase 1 [Source:ZFIN;Acc:ZDB-GENE-020419-32]
82. zgc:112425 zgc:112425 293873 0.794 - - - - - - - 0.794 -
83. hmgn2 ENSDARG00000099572 110168 0.793 - - - - - - 0.793 - - high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
84. efnb3b ENSDARG00000042277 5823 0.792 - - - - 0.792 - - - - ephrin-B3b [Source:ZFIN;Acc:ZDB-GENE-010618-3]
85. top2a ENSDARG00000024488 4273 0.791 - - - - 0.791 - - - - DNA topoisomerase II alpha [Source:ZFIN;Acc:ZDB-GENE-030131-2453]
86. eng2b eng2b 865 0.789 - - - - 0.789 - - - -
87. pcif1 ENSDARG00000099084 2851 0.789 - - - - 0.789 - - - - PDX1 C-terminal inhibiting factor 1 [Source:ZFIN;Acc:ZDB-GENE-120920-2]
88. mab21l1 ENSDARG00000102047 4665 0.789 - - - - 0.789 - - - - mab-21-like 1 [Source:ZFIN;Acc:ZDB-GENE-020516-1]
89. stx6 ENSDARG00000042742, ENSDARG00000115635 1208 0.788 - - - - 0.788 - - - - syntaxin 6 [Source:ZFIN;Acc:ZDB-GENE-030131-858]
90. dld ENSDARG00000020219 4928 0.787 - - - - 0.787 - - - - deltaD [Source:ZFIN;Acc:ZDB-GENE-990415-47]
91. sf3b3_1 ENSDARG00000103553 1191 0.786 - - - - 0.786 - - - - splicing factor 3b, subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2901]
92. BAZ1A ENSDARG00000063233, ENSDARG00000099745 1432 0.786 - - - - 0.786 - - - - bromodomain adjacent to zinc finger domain, 1A [Source:ZFIN;Acc:ZDB-GENE-030131-6105]
93. wu:fc26g07 wu:fc26g07 1165 0.786 - - - - 0.786 - - - -
94. ppm1g ENSDARG00000075559 6516 0.785 - - - - - - - - 0.785 protein phosphatase, Mg2+/Mn2+ dependent, 1G [Source:ZFIN;Acc:ZDB-GENE-030425-4]
95. ptgr1 ENSDARG00000024877, ENSDARG00000115676 4312 0.785 - - - - 0.785 - - - - prostaglandin reductase 1 [Source:ZFIN;Acc:ZDB-GENE-041212-80]
96. znf280d ENSDARG00000077013 1387 0.785 - - - - 0.785 - - - - zinc finger protein 280D [Source:ZFIN;Acc:ZDB-GENE-030131-2260]
97. mrgbp ENSDARG00000028894, ENSDARG00000110790 1316 0.784 - - - - 0.784 - - - - MRG/MORF4L binding protein [Source:ZFIN;Acc:ZDB-GENE-040426-1698]
98. sox4a ENSDARG00000004588, ENSDARG00000096389 2213 0.784 - - - - 0.784 - - - - SRY (sex determining region Y)-box 4a [Source:ZFIN;Acc:ZDB-GENE-030131-8290]
99. si:dkey-251i10.2 ENSDARG00000093957 4424 0.784 - - - - 0.784 - - - - si:dkey-251i10.2 [Source:ZFIN;Acc:ZDB-GENE-050506-102]
100. bnip4 ENSDARG00000022832, ENSDARG00000117207 3100 0.784 - - - - 0.784 - - - - BCL2 interacting protein 4 [Source:ZFIN;Acc:ZDB-GENE-051113-212]

There are 240 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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