Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for shox2

Gene Name Gene ID Reads Annotation
shox2 ENSDARG00000075713 104 short stature homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1457]










Genes with expression patterns similar to shox2

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. shox2 ENSDARG00000075713 104 7 1.000 - 1.000 1.000 1.000 1.000 - 1.000 1.000 short stature homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1457]
2. si:dkey-4m13.3 6 1.843 1.000 - - 0.843 - - - - - si:dkey-4m13.3
3. BX470254.1_1 ENSDARG00000097402 50 1.824 1.000 - - - - 0.824 - - -
4. si:dkey-179k24.3 si:dkey-179k24.3 3 1.818 1.000 - - - 0.818 - - - -
5. MPPED1 ENSDARG00000088181 117 1.804 1.000 - - - - - - 0.804 - metallophosphoesterase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-111104-1]
6. si:ch211-120c15.3 ENSDARG00000101807 19 1.772 0.916 - - 0.856 - - - - - si:ch211-120c15.3 [Source:ZFIN;Acc:ZDB-GENE-110913-99]
7. slc8a4a ENSDARG00000055154 90 1.767 0.946 - - - - 0.821 - - - solute carrier family 8 (sodium/calcium exchanger), member 4a [Source:ZFIN;Acc:ZDB-GENE-060110-2]
8. crygn2 ENSDARG00000030411 2551 1.737 0.913 - - 0.824 - - - - - crystallin, gamma N2 [Source:ZFIN;Acc:ZDB-GENE-040801-16]
9. scrt1b ENSDARG00000040214, ENSDARG00000110984 533 1.733 1.000 - - - - 0.733 - - - scratch family zinc finger 1b [Source:ZFIN;Acc:ZDB-GENE-050327-72]
10. sprb ENSDARG00000058553 1694 1.724 0.872 - - - - 0.852 - - - sepiapterin reductase b [Source:ZFIN;Acc:ZDB-GENE-070719-1]
11. CU367845.1_1 CU367845.1_1 43 1.717 - - - 0.843 0.874 - - - -
12. ccdc157 ENSDARG00000056279 31 1.714 1.000 - - - 0.714 - - - - coiled-coil domain containing 157 [Source:ZFIN;Acc:ZDB-GENE-030616-155]
13. entpd3 ENSDARG00000035309 263 1.703 0.875 - - - - 0.828 - - - ectonucleoside triphosphate diphosphohydrolase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6186]
14. arf3a ENSDARG00000070539 29 1.689 - - - 0.863 - 0.826 - - - ADP-ribosylation factor 3a [Source:ZFIN;Acc:ZDB-GENE-040801-176]
15. CR318624.1 ENSDARG00000094618 5 1.667 - - - 0.843 0.824 - - - -
16. SLC36A4 ENSDARG00000039661 175 1.666 0.853 - - - - 0.813 - - - solute carrier family 36 (proton/amino acid symporter), member 4 [Source:ZFIN;Acc:ZDB-GENE-050309-239]
17. crygm2d4 ENSDARG00000087164, ENSDARG00000115295 138 1.662 - - - 0.828 0.834 - - - - crystallin, gamma M2d4 [Source:ZFIN;Acc:ZDB-GENE-060918-3]
18. CABZ01030262.1 CABZ01030262.1 11 1.653 - - - - 0.818 0.835 - - -
19. POLR2M ENSDARG00000074968, ENSDARG00000113507 137 1.645 0.905 - - - - 0.740 - - - RNA polymerase II subunit M [Source:ZFIN;Acc:ZDB-GENE-160728-95]
20. CR936200.1 CR936200.1 327 1.628 0.876 - - - - 0.752 - - -
21. KLHL14 ENSDARG00000045275 155 1.627 0.773 - - - - 0.854 - - - kelch-like family member 14 [Source:ZFIN;Acc:ZDB-GENE-091204-223]
22. aatkb ENSDARG00000104442 392 1.607 0.778 - - - - 0.829 - - - apoptosis-associated tyrosine kinase b [Source:ZFIN;Acc:ZDB-GENE-100812-6]
23. olig4 ENSDARG00000052610, ENSDARG00000116678 1704 1.594 0.801 - - - - 0.793 - - - oligodendrocyte transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-030131-3580]
24. CU469509.2 CU469509.2 4 1.594 - - - 0.776 0.818 - - - -
25. BCL2 BCL2 122 1.582 0.769 - - - - 0.813 - - -
26. npb ENSDARG00000078828 230 1.576 0.740 - - 0.836 - - - - - neuropeptide B [Source:ZFIN;Acc:ZDB-GENE-040107-40]
27. celf3b ENSDARG00000006983 171 1.575 0.765 - - 0.810 - - - - - cugbp, Elav-like family member 3b [Source:ZFIN;Acc:ZDB-GENE-110408-50]
28. rfc4 ENSDARG00000042458 2 1.558 - - - 0.843 - - - 0.715 - replication factor C (activator 1) 4 [Source:ZFIN;Acc:ZDB-GENE-040824-3]
29. neurod6a ENSDARG00000040008 17 1.555 - - - - 0.834 - - 0.721 - neuronal differentiation 6a [Source:ZFIN;Acc:ZDB-GENE-010608-1]
30. SLC29A4 ENSDARG00000059690 470 1.55 0.829 - - - - 0.721 - - - solute carrier family 29 (equilibrative nucleoside transporter), member 4 [Source:ZFIN;Acc:ZDB-GENE-070112-1932]
31. zgc:174697 zgc:174697 128 1.547 0.729 - - - - 0.818 - - -
32. hcfc1a ENSDARG00000015990, ENSDARG00000111404 59 1.542 - - - - 0.751 0.791 - - - host cell factor C1a [Source:ZFIN;Acc:ZDB-GENE-030912-10]
33. kcnip1b ENSDARG00000034808, ENSDARG00000111766 136 1.542 - - - - - 0.809 - 0.733 - Kv channel interacting protein 1 b [Source:ZFIN;Acc:ZDB-GENE-041212-57]
34. GRIN2B GRIN2B 140 1.541 0.723 - - - - 0.818 - - -
35. wibg wibg 2 1.535 - - - - 0.818 - - 0.717 -
36. hesx1 ENSDARG00000060734 2 1.533 - - - - 0.818 - - 0.715 - HESX homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-990415-130]
37. ek1 ENSDARG00000020080 742 1.53 - - - 0.762 - 0.768 - - - eph-like kinase 1 [Source:ZFIN;Acc:ZDB-GENE-990415-58]
38. si:dkey-22o22.2 ENSDARG00000102445 149 1.513 0.703 - - - - 0.810 - - - si:dkey-22o22.2 [Source:ZFIN;Acc:ZDB-GENE-100922-84]
39. wu:fd44f01 wu:fd44f01 391 1.497 0.794 - - - - 0.703 - - -
40. CT990561.1 ENSDARG00000058284 566 1.493 - - - 0.705 - 0.788 - - - EPH receptor A5 [Source:NCBI gene;Acc:797595]
41. synpr ENSDARG00000044278 20 1.484 - - - 0.707 - - - 0.777 - synaptoporin [Source:ZFIN;Acc:ZDB-GENE-030616-625]
42. chrnb3a ENSDARG00000052764, ENSDARG00000112769 139 1.483 - - - - - 0.748 - 0.735 - cholinergic receptor, nicotinic, beta polypeptide 3a [Source:ZFIN;Acc:ZDB-GENE-040108-1]
43. espl1 ENSDARG00000075354 818 1.483 0.705 - - - - 0.778 - - - extra spindle pole bodies like 1, separase [Source:ZFIN;Acc:ZDB-GENE-030131-5188]
44. fam19a5 fam19a5 8 1 1.000 - - - - - - - -
45. si:dkeyp-87e3.3 si:dkeyp-87e3.3 68 1 1.000 - - - - - - - -
46. zgc:154054 ENSDARG00000099923 19 1 1.000 - - - - - - - - zgc:154054 [Source:ZFIN;Acc:ZDB-GENE-061103-283]
47. si:dkey-247m21.3 ENSDARG00000001906 1 1 1.000 - - - - - - - - si:dkey-247m21.3 [Source:ZFIN;Acc:ZDB-GENE-091204-249]
48. ca4b ENSDARG00000042293 5 1 1.000 - - - - - - - - carbonic anhydrase IV b [Source:ZFIN;Acc:ZDB-GENE-080815-5]
49. BX119910.3 BX119910.3 7 1 1.000 - - - - - - - -
50. edil3 edil3 24 1 1.000 - - - - - - - -
51. cyp2aa2 ENSDARG00000104811 77 1 1.000 - - - - - - - - y cytochrome P450, family 2, subfamily AA, polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-061027-232]
52. CNGB1 CNGB1 40 1 1.000 - - - - - - - -
53. sez6l ENSDARG00000100594 35 1 1.000 - - - - - - - - seizure related 6 homolog (mouse)-like [Source:ZFIN;Acc:ZDB-GENE-091204-162]
54. CU694319.1 CU694319.1 72 1 1.000 - - - - - - - -
55. si:ch211-63o20.7 ENSDARG00000042000 93 1 1.000 - - - - - - - - si:ch211-63o20.7 [Source:ZFIN;Acc:ZDB-GENE-041001-194]
56. CU672227.1 ENSDARG00000105807 15 1 1.000 - - - - - - - -
57. GPR22_1 GPR22_1 28 1 1.000 - - - - - - - -
58. trpm1a ENSDARG00000011259, ENSDARG00000111200, ENSDARG00000112747 48 1 1.000 - - - - - - - - transient receptor potential cation channel, subfamily M, member 1a [Source:ZFIN;Acc:ZDB-GENE-070112-1372]
59. tecrl2 tecrl2 11 1 1.000 - - - - - - - -
60. trmt2b ENSDARG00000033967 127 1 1.000 - - - - - - - - tRNA methyltransferase 2 homolog B [Source:ZFIN;Acc:ZDB-GENE-050809-101]
61. si:ch1073-296i8.2 ENSDARG00000093773 36 1 1.000 - - - - - - - - si:ch1073-296i8.2 [Source:ZFIN;Acc:ZDB-GENE-110411-9]
62. ch25hl2 ENSDARG00000038728 100 1 1.000 - - - - - - - - cholesterol 25-hydroxylase like 2 [Source:ZFIN;Acc:ZDB-GENE-080204-82]
63. myl2b ENSDARG00000053424 226 1 1.000 - - - - - - - - myosin, light chain 2b, regulatory, cardiac, slow [Source:ZFIN;Acc:ZDB-GENE-060331-137]
64. drd2l ENSDARG00000014858 1 1 1.000 - - - - - - - - dopamine receptor D2 like [Source:ZFIN;Acc:ZDB-GENE-030910-1]
65. FGFBP3 FGFBP3 993 1 1.000 - - - - - - - -
66. si:ch73-103b2.1 ENSDARG00000095944, ENSDARG00000099867 40 1 1.000 - - - - - - - - si:ch73-103b2.1 [Source:ZFIN;Acc:ZDB-GENE-110408-42]
67. ebf1b ENSDARG00000069196 64 1 1.000 - - - - - - - - early B cell factor 1b [Source:ZFIN;Acc:ZDB-GENE-090814-2]
68. rgs11 ENSDARG00000037646 24 1 1.000 - - - - - - - - regulator of G protein signaling 11 [Source:ZFIN;Acc:ZDB-GENE-080220-46]
69. GRM8_1 GRM8_1 85 1 1.000 - - - - - - - -
70. si:dkey-122c11.4 si:dkey-122c11.4 13 1 1.000 - - - - - - - -
71. si:ch211-171h4.7 ENSDARG00000088408 168 1 1.000 - - - - - - - - si:ch211-171h4.7 [Source:ZFIN;Acc:ZDB-GENE-120215-25]
72. si:dkey-57k2.7 ENSDARG00000060395, ENSDARG00000095191 5 1 1.000 - - - - - - - - si:dkey-57k2.7 [Source:ZFIN;Acc:ZDB-GENE-070912-559]
73. gsx2 ENSDARG00000043322, ENSDARG00000116417 329 1 1.000 - - - - - - - - GS homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-041001-114]
74. si:dkey-178e17.2 1 1 1.000 - - - - - - - - si:dkey-178e17.2, transcript variant X2
75. p2rx3a ENSDARG00000010477, ENSDARG00000115270 6 1 1.000 - - - - - - - - purinergic receptor P2X, ligand-gated ion channel, 3a [Source:ZFIN;Acc:ZDB-GENE-000427-3]
76. cntn5 ENSDARG00000021584 30 1 1.000 - - - - - - - - contactin 5 [Source:ZFIN;Acc:ZDB-GENE-030131-5640]
77. APCDD1 ENSDARG00000098203 10 1 1.000 - - - - - - - - APC down-regulated 1 [Source:HGNC Symbol;Acc:HGNC:15718]
78. si:dkey-72l14.7 si:dkey-72l14.7 3 1 1.000 - - - - - - - -
79. pls1 ENSDARG00000039272 39 1 1.000 - - - - - - - - plastin 1 (I isoform) [Source:ZFIN;Acc:ZDB-GENE-030131-6205]
80. ptf1a ENSDARG00000014479 349 1 1.000 - - - - - - - - pancreas associated transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-030616-579]
81. usp47 ENSDARG00000102645 16 1 1.000 - - - - - - - - ubiquitin specific peptidase 47 [Source:ZFIN;Acc:ZDB-GENE-070719-7]
82. CR848784.2 ENSDARG00000111157 16 1 1.000 - - - - - - - -
83. mms19 ENSDARG00000079067 65 1 1.000 - - - - - - - - MMS19 homolog, cytosolic iron-sulfur assembly component [Source:ZFIN;Acc:ZDB-GENE-120316-2]
84. gabrb2 ENSDARG00000079586 33 1 1.000 - - - - - - - - gamma-aminobutyric acid (GABA) A receptor, beta 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8196]
85. zgc:110191 zgc:110191 359 1 1.000 - - - - - - - -
86. bckdhb ENSDARG00000014676 17 1 1.000 - - - - - - - - branched chain keto acid dehydrogenase E1, beta polypeptide [Source:ZFIN;Acc:ZDB-GENE-030124-2]
87. pcdh2ab7 7 1 1.000 - - - - - - - - protocadherin 2 alpha b 7
88. si:dkey-34e4.1 ENSDARG00000022085 5 1 1.000 - - - - - - - - si:dkey-34e4.1 [Source:ZFIN;Acc:ZDB-GENE-070705-456]
89. bcl11aa ENSDARG00000061352 61 1 1.000 - - - - - - - - B cell CLL/lymphoma 11Aa [Source:ZFIN;Acc:ZDB-GENE-060421-4643]
90. CABZ01066717.2 CABZ01066717.2 10 1 1.000 - - - - - - - -
91. CABZ01081294.1 CABZ01081294.1 1 1 1.000 - - - - - - - -
92. CR936540.2 CR936540.2 4 1 1.000 - - - - - - - -
93. si:dkey-217f16.3 si:dkey-217f16.3 1 1 1.000 - - - - - - - -
94. si:dkey-156m18.1 si:dkey-156m18.1 13 1 1.000 - - - - - - - -
95. scd ENSDARG00000033662 146 1 1.000 - - - - - - - - stearoyl-CoA desaturase (delta-9-desaturase) [Source:ZFIN;Acc:ZDB-GENE-031106-3]
96. elfn2 elfn2 1 1 1.000 - - - - - - - -
97. SNORA38 SNORA38 574 1 1.000 - - - - - - - -
98. BX928744.1 BX928744.1 15 1 1.000 - - - - - - - -
99. setmar ENSDARG00000074836 29 1 1.000 - - - - - - - - SET domain and mariner transposase fusion gene [Source:ZFIN;Acc:ZDB-GENE-080204-61]
100. FP085391.2 FP085391.2 85 1 1.000 - - - - - - - -

There are 1332 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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