Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for shox2

Gene Name Gene ID Reads Annotation
shox2 ENSDARG00000075713 104 short stature homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1457]










Genes with expression patterns similar to shox2

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. shox2 ENSDARG00000075713 104 7 1.000 - 1.000 1.000 1.000 1.000 - 1.000 1.000 short stature homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1457]
2. si:dkey-4m13.3 6 1.843 1.000 - - 0.843 - - - - - si:dkey-4m13.3
3. BX470254.1_1 ENSDARG00000097402 50 1.824 1.000 - - - - 0.824 - - -
4. si:dkey-179k24.3 si:dkey-179k24.3 3 1.818 1.000 - - - 0.818 - - - -
5. MPPED1 ENSDARG00000088181 117 1.804 1.000 - - - - - - 0.804 - metallophosphoesterase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-111104-1]
6. si:ch211-120c15.3 ENSDARG00000101807 19 1.772 0.916 - - 0.856 - - - - - si:ch211-120c15.3 [Source:ZFIN;Acc:ZDB-GENE-110913-99]
7. slc8a4a ENSDARG00000055154 90 1.767 0.946 - - - - 0.821 - - - solute carrier family 8 (sodium/calcium exchanger), member 4a [Source:ZFIN;Acc:ZDB-GENE-060110-2]
8. crygn2 ENSDARG00000030411 2551 1.737 0.913 - - 0.824 - - - - - crystallin, gamma N2 [Source:ZFIN;Acc:ZDB-GENE-040801-16]
9. scrt1b ENSDARG00000040214, ENSDARG00000110984 533 1.733 1.000 - - - - 0.733 - - - scratch family zinc finger 1b [Source:ZFIN;Acc:ZDB-GENE-050327-72]
10. sprb ENSDARG00000058553 1694 1.724 0.872 - - - - 0.852 - - - sepiapterin reductase b [Source:ZFIN;Acc:ZDB-GENE-070719-1]
11. CU367845.1_1 CU367845.1_1 43 1.717 - - - 0.843 0.874 - - - -
12. ccdc157 ENSDARG00000056279 31 1.714 1.000 - - - 0.714 - - - - coiled-coil domain containing 157 [Source:ZFIN;Acc:ZDB-GENE-030616-155]
13. entpd3 ENSDARG00000035309 263 1.703 0.875 - - - - 0.828 - - - ectonucleoside triphosphate diphosphohydrolase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6186]
14. arf3a ENSDARG00000070539 29 1.689 - - - 0.863 - 0.826 - - - ADP-ribosylation factor 3a [Source:ZFIN;Acc:ZDB-GENE-040801-176]
15. CR318624.1 ENSDARG00000094618 5 1.667 - - - 0.843 0.824 - - - -
16. SLC36A4 ENSDARG00000039661 175 1.666 0.853 - - - - 0.813 - - - solute carrier family 36 (proton/amino acid symporter), member 4 [Source:ZFIN;Acc:ZDB-GENE-050309-239]
17. crygm2d4 ENSDARG00000087164, ENSDARG00000115295 138 1.662 - - - 0.828 0.834 - - - - crystallin, gamma M2d4 [Source:ZFIN;Acc:ZDB-GENE-060918-3]
18. CABZ01030262.1 CABZ01030262.1 11 1.653 - - - - 0.818 0.835 - - -
19. POLR2M ENSDARG00000074968, ENSDARG00000113507 137 1.645 0.905 - - - - 0.740 - - - RNA polymerase II subunit M [Source:ZFIN;Acc:ZDB-GENE-160728-95]
20. CR936200.1 CR936200.1 327 1.628 0.876 - - - - 0.752 - - -
21. KLHL14 ENSDARG00000045275 155 1.627 0.773 - - - - 0.854 - - - kelch-like family member 14 [Source:ZFIN;Acc:ZDB-GENE-091204-223]
22. aatkb ENSDARG00000104442 392 1.607 0.778 - - - - 0.829 - - - apoptosis-associated tyrosine kinase b [Source:ZFIN;Acc:ZDB-GENE-100812-6]
23. olig4 ENSDARG00000052610, ENSDARG00000116678 1704 1.594 0.801 - - - - 0.793 - - - oligodendrocyte transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-030131-3580]
24. CU469509.2 CU469509.2 4 1.594 - - - 0.776 0.818 - - - -
25. BCL2 BCL2 122 1.582 0.769 - - - - 0.813 - - -
26. npb ENSDARG00000078828 230 1.576 0.740 - - 0.836 - - - - - neuropeptide B [Source:ZFIN;Acc:ZDB-GENE-040107-40]
27. celf3b ENSDARG00000006983 171 1.575 0.765 - - 0.810 - - - - - cugbp, Elav-like family member 3b [Source:ZFIN;Acc:ZDB-GENE-110408-50]
28. rfc4 ENSDARG00000042458 2 1.558 - - - 0.843 - - - 0.715 - replication factor C (activator 1) 4 [Source:ZFIN;Acc:ZDB-GENE-040824-3]
29. neurod6a ENSDARG00000040008 17 1.555 - - - - 0.834 - - 0.721 - neuronal differentiation 6a [Source:ZFIN;Acc:ZDB-GENE-010608-1]
30. SLC29A4 ENSDARG00000059690 470 1.55 0.829 - - - - 0.721 - - - solute carrier family 29 (equilibrative nucleoside transporter), member 4 [Source:ZFIN;Acc:ZDB-GENE-070112-1932]
31. zgc:174697 zgc:174697 128 1.547 0.729 - - - - 0.818 - - -
32. kcnip1b ENSDARG00000034808, ENSDARG00000111766 136 1.542 - - - - - 0.809 - 0.733 - Kv channel interacting protein 1 b [Source:ZFIN;Acc:ZDB-GENE-041212-57]
33. hcfc1a ENSDARG00000015990, ENSDARG00000111404 59 1.542 - - - - 0.751 0.791 - - - host cell factor C1a [Source:ZFIN;Acc:ZDB-GENE-030912-10]
34. GRIN2B GRIN2B 140 1.541 0.723 - - - - 0.818 - - -
35. wibg wibg 2 1.535 - - - - 0.818 - - 0.717 -
36. hesx1 ENSDARG00000060734 2 1.533 - - - - 0.818 - - 0.715 - HESX homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-990415-130]
37. ek1 ENSDARG00000020080 742 1.53 - - - 0.762 - 0.768 - - - eph-like kinase 1 [Source:ZFIN;Acc:ZDB-GENE-990415-58]
38. si:dkey-22o22.2 ENSDARG00000102445 149 1.513 0.703 - - - - 0.810 - - - si:dkey-22o22.2 [Source:ZFIN;Acc:ZDB-GENE-100922-84]
39. wu:fd44f01 wu:fd44f01 391 1.497 0.794 - - - - 0.703 - - -
40. CT990561.1 ENSDARG00000058284 566 1.493 - - - 0.705 - 0.788 - - - EPH receptor A5 [Source:NCBI gene;Acc:797595]
41. synpr ENSDARG00000044278 20 1.484 - - - 0.707 - - - 0.777 - synaptoporin [Source:ZFIN;Acc:ZDB-GENE-030616-625]
42. chrnb3a ENSDARG00000052764, ENSDARG00000112769 139 1.483 - - - - - 0.748 - 0.735 - cholinergic receptor, nicotinic, beta polypeptide 3a [Source:ZFIN;Acc:ZDB-GENE-040108-1]
43. espl1 ENSDARG00000075354 818 1.483 0.705 - - - - 0.778 - - - extra spindle pole bodies like 1, separase [Source:ZFIN;Acc:ZDB-GENE-030131-5188]
44. ADAMTS15_1 ADAMTS15_1 11 1 1.000 - - - - - - - -
45. scn1a 8 1 1.000 - - - - - - - - sodium channel, voltage-gated, type I, alpha, transcript variant X1
46. C3AR1 18 1 1.000 - - - - - - - - C3a anaphylatoxin chemotactic receptor
47. cdcp1a ENSDARG00000058943 70 1 1.000 - - - - - - - - CUB domain containing protein 1a [Source:ZFIN;Acc:ZDB-GENE-050327-55]
48. CIR1 ENSDARG00000099733 66 1 1.000 - - - - - - - - corepressor interacting with RBPJ, 1 [Source:HGNC Symbol;Acc:HGNC:24217]
49. dand5 ENSDARG00000036471 8 1 1.000 - - - - - - - - DAN domain family, member 5 [Source:ZFIN;Acc:ZDB-GENE-040421-2]
50. BX000999.2 BX000999.2 2353 1 1.000 - - - - - - - -
51. mamdc2b ENSDARG00000073695 26 1 1.000 - - - - - - - - MAM domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-091117-16]
52. map3k8 ENSDARG00000061710 76 1 1.000 - - - - - - - - mitogen-activated protein kinase kinase kinase 8 [Source:ZFIN;Acc:ZDB-GENE-100316-8]
53. si:ch211-132b12.7 ENSDARG00000068374 30 1 1.000 - - - - - - - - si:ch211-132b12.7 [Source:ZFIN;Acc:ZDB-GENE-050419-250]
54. si:dkey-9i23.6 ENSDARG00000094678 58 1 1.000 - - - - - - - - si:dkey-9i23.6 [Source:ZFIN;Acc:ZDB-GENE-090313-365]
55. figf 48 1 1.000 - - - - - - - - c-fos induced growth factor, transcript variant X2
56. oprm1 ENSDARG00000039434 22 1 1.000 - - - - - - - - opioid receptor, mu 1 [Source:ZFIN;Acc:ZDB-GENE-010125-1]
57. si:ch211-191a6.3 si:ch211-191a6.3 6 1 1.000 - - - - - - - -
58. si:dkey-208k4.1 si:dkey-208k4.1 15 1 1.000 - - - - - - - -
59. CABZ01081748.1 ENSDARG00000102139 31 1 1.000 - - - - - - - - gastrula zinc finger protein XlCGF8.2DB-like [Source:NCBI gene;Acc:100007471]
60. ABCA7 ABCA7 12 1 1.000 - - - - - - - -
61. ARSI_1 ARSI_1 38 1 1.000 - - - - - - - -
62. ptchd4 ENSDARG00000008249 17 1 1.000 - - - - - - - - patched domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-041001-178]
63. AL935181.2 AL935181.2 9 1 1.000 - - - - - - - -
64. CABZ01064968.2 CABZ01064968.2 20 1 1.000 - - - - - - - -
65. rab3da ENSDARG00000018107 28 1 1.000 - - - - - - - - RAB3D, member RAS oncogene family, a [Source:ZFIN;Acc:ZDB-GENE-080722-14]
66. CR450785.2 ENSDARG00000111875 1 1 1.000 - - - - - - - -
67. si:dkey-51d8.6 ENSDARG00000090769 17 1 1.000 - - - - - - - - si:dkey-51d8.6 [Source:ZFIN;Acc:ZDB-GENE-110914-115]
68. opn5 ENSDARG00000070110 18 1 1.000 - - - - - - - - opsin 5 [Source:ZFIN;Acc:ZDB-GENE-041001-179]
69. si:dkey-148e22.3 si:dkey-148e22.3 4 1 1.000 - - - - - - - -
70. CABZ01070007.1 CABZ01070007.1 5 1 1.000 - - - - - - - -
71. MLLT4 MLLT4 67 1 1.000 - - - - - - - -
72. ftr42 4 1 1.000 - - - - - - - - finTRIM family, member 42
73. me1 ENSDARG00000053215 107 1 1.000 - - - - - - - - malic enzyme 1, NADP(+)-dependent, cytosolic [Source:ZFIN;Acc:ZDB-GENE-061013-438]
74. FP017295.1 ENSDARG00000091185 22 1 1.000 - - - - - - - -
75. lrrc4bb ENSDARG00000014792 47 1 1.000 - - - - - - - - leucine rich repeat containing 4Bb [Source:ZFIN;Acc:ZDB-GENE-091116-44]
76. fbxo43 ENSDARG00000104186 40 1 1.000 - - - - - - - - F-box protein 43 [Source:ZFIN;Acc:ZDB-GENE-040426-1645]
77. si:dkey-60a16.4 si:dkey-60a16.4 14 1 1.000 - - - - - - - -
78. si:ch211-152l15.4 si:ch211-152l15.4 13 1 1.000 - - - - - - - -
79. atxn1b ENSDARG00000060862 345 1 1.000 - - - - - - - - ataxin 1b [Source:ZFIN;Acc:ZDB-GENE-061218-2]
80. si:ch211-274p24.4 ENSDARG00000087088 36 1 1.000 - - - - - - - - si:ch211-274p24.4 [Source:ZFIN;Acc:ZDB-GENE-091204-337]
81. zgc:110789 ENSDARG00000052497, ENSDARG00000111073 171 1 1.000 - - - - - - - - zgc:110789 [Source:ZFIN;Acc:ZDB-GENE-050306-38]
82. pak1_1 ENSDARG00000103959 28 1 1.000 - - - - - - - - p21 protein (Cdc42/Rac)-activated kinase 1 [Source:ZFIN;Acc:ZDB-GENE-030826-29]
83. NMUR1 NMUR1 30 1 1.000 - - - - - - - -
84. mlc1 ENSDARG00000063026 29 1 1.000 - - - - - - - - megalencephalic leukoencephalopathy with subcortical cysts 1 [Source:ZFIN;Acc:ZDB-GENE-050419-145]
85. slc5a2 ENSDARG00000100919 47 1 1.000 - - - - - - - - solute carrier family 5 (sodium/glucose cotransporter), member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2498]
86. sult4a1 ENSDARG00000101967 205 1 1.000 - - - - - - - - sulfotransferase family 4A, member 1 [Source:ZFIN;Acc:ZDB-GENE-060421-2705]
87. CABZ01044346.1 CABZ01044346.1 12 1 1.000 - - - - - - - -
88. CECR6 25 1 1.000 - - - - - - - - cat eye syndrome chromosome region, candidate 6
89. scn1a_2 1 1 1.000 - - - - - - - - sodium channel, voltage-gated, type I, alpha, transcript variant X1
90. si:dkey-29p23.3 si:dkey-29p23.3 3 1 1.000 - - - - - - - -
91. cradd ENSDARG00000028192 153 1 1.000 - - - - - - - - CASP2 and RIPK1 domain containing adaptor with death domain [Source:ZFIN;Acc:ZDB-GENE-041010-168]
92. si:ch73-269m14.3 ENSDARG00000096305 28 1 1.000 - - - - - - - - si:ch73-269m14.3 [Source:ZFIN;Acc:ZDB-GENE-120215-13]
93. asic4b ENSDARG00000004243 31 1 1.000 - - - - - - - - acid-sensing (proton-gated) ion channel family member 4b [Source:ZFIN;Acc:ZDB-GENE-040513-6]
94. zgc:163077 ENSDARG00000101593 60 1 1.000 - - - - - - - - zgc:163077 [Source:ZFIN;Acc:ZDB-GENE-070521-6]
95. btbd3a ENSDARG00000005544 595 1 1.000 - - - - - - - - BTB (POZ) domain containing 3a [Source:ZFIN;Acc:ZDB-GENE-090312-7]
96. msxa msxa 263 1 1.000 - - - - - - - -
97. zdhhc23b ENSDARG00000003899, ENSDARG00000116894 31 1 1.000 - - - - - - - - zinc finger, DHHC-type containing 23b [Source:ZFIN;Acc:ZDB-GENE-040808-13]
98. ciz1a ENSDARG00000089781 20 1 1.000 - - - - - - - - cdkn1a interacting zinc finger protein 1a [Source:ZFIN;Acc:ZDB-GENE-100922-222]
99. dapk3 ENSDARG00000074447 12 1 1.000 - - - - - - - - death-associated protein kinase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-3026]
100. c6ast1 ENSDARG00000069216 8 1 1.000 - - - - - - - - six-cysteine containing astacin protease 1 [Source:ZFIN;Acc:ZDB-GENE-070621-1]

There are 1332 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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