Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for shox2

Gene Name Gene ID Reads Annotation
shox2 ENSDARG00000075713 104 short stature homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1457]










Genes with expression patterns similar to shox2

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. shox2 ENSDARG00000075713 104 7 1.000 - 1.000 1.000 1.000 1.000 - 1.000 1.000 short stature homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1457]
2. si:dkey-4m13.3 6 1.843 1.000 - - 0.843 - - - - - si:dkey-4m13.3
3. BX470254.1_1 ENSDARG00000097402 50 1.824 1.000 - - - - 0.824 - - -
4. si:dkey-179k24.3 si:dkey-179k24.3 3 1.818 1.000 - - - 0.818 - - - -
5. MPPED1 ENSDARG00000088181 117 1.804 1.000 - - - - - - 0.804 - metallophosphoesterase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-111104-1]
6. si:ch211-120c15.3 ENSDARG00000101807 19 1.772 0.916 - - 0.856 - - - - - si:ch211-120c15.3 [Source:ZFIN;Acc:ZDB-GENE-110913-99]
7. slc8a4a ENSDARG00000055154 90 1.767 0.946 - - - - 0.821 - - - solute carrier family 8 (sodium/calcium exchanger), member 4a [Source:ZFIN;Acc:ZDB-GENE-060110-2]
8. crygn2 ENSDARG00000030411 2551 1.737 0.913 - - 0.824 - - - - - crystallin, gamma N2 [Source:ZFIN;Acc:ZDB-GENE-040801-16]
9. scrt1b ENSDARG00000040214, ENSDARG00000110984 533 1.733 1.000 - - - - 0.733 - - - scratch family zinc finger 1b [Source:ZFIN;Acc:ZDB-GENE-050327-72]
10. sprb ENSDARG00000058553 1694 1.724 0.872 - - - - 0.852 - - - sepiapterin reductase b [Source:ZFIN;Acc:ZDB-GENE-070719-1]
11. CU367845.1_1 CU367845.1_1 43 1.717 - - - 0.843 0.874 - - - -
12. ccdc157 ENSDARG00000056279 31 1.714 1.000 - - - 0.714 - - - - coiled-coil domain containing 157 [Source:ZFIN;Acc:ZDB-GENE-030616-155]
13. entpd3 ENSDARG00000035309 263 1.703 0.875 - - - - 0.828 - - - ectonucleoside triphosphate diphosphohydrolase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6186]
14. arf3a ENSDARG00000070539 29 1.689 - - - 0.863 - 0.826 - - - ADP-ribosylation factor 3a [Source:ZFIN;Acc:ZDB-GENE-040801-176]
15. CR318624.1 ENSDARG00000094618 5 1.667 - - - 0.843 0.824 - - - -
16. SLC36A4 ENSDARG00000039661 175 1.666 0.853 - - - - 0.813 - - - solute carrier family 36 (proton/amino acid symporter), member 4 [Source:ZFIN;Acc:ZDB-GENE-050309-239]
17. crygm2d4 ENSDARG00000087164, ENSDARG00000115295 138 1.662 - - - 0.828 0.834 - - - - crystallin, gamma M2d4 [Source:ZFIN;Acc:ZDB-GENE-060918-3]
18. CABZ01030262.1 CABZ01030262.1 11 1.653 - - - - 0.818 0.835 - - -
19. POLR2M ENSDARG00000074968, ENSDARG00000113507 137 1.645 0.905 - - - - 0.740 - - - RNA polymerase II subunit M [Source:ZFIN;Acc:ZDB-GENE-160728-95]
20. CR936200.1 CR936200.1 327 1.628 0.876 - - - - 0.752 - - -
21. KLHL14 ENSDARG00000045275 155 1.627 0.773 - - - - 0.854 - - - kelch-like family member 14 [Source:ZFIN;Acc:ZDB-GENE-091204-223]
22. aatkb ENSDARG00000104442 392 1.607 0.778 - - - - 0.829 - - - apoptosis-associated tyrosine kinase b [Source:ZFIN;Acc:ZDB-GENE-100812-6]
23. olig4 ENSDARG00000052610, ENSDARG00000116678 1704 1.594 0.801 - - - - 0.793 - - - oligodendrocyte transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-030131-3580]
24. CU469509.2 CU469509.2 4 1.594 - - - 0.776 0.818 - - - -
25. BCL2 BCL2 122 1.582 0.769 - - - - 0.813 - - -
26. npb ENSDARG00000078828 230 1.576 0.740 - - 0.836 - - - - - neuropeptide B [Source:ZFIN;Acc:ZDB-GENE-040107-40]
27. celf3b ENSDARG00000006983 171 1.575 0.765 - - 0.810 - - - - - cugbp, Elav-like family member 3b [Source:ZFIN;Acc:ZDB-GENE-110408-50]
28. rfc4 ENSDARG00000042458 2 1.558 - - - 0.843 - - - 0.715 - replication factor C (activator 1) 4 [Source:ZFIN;Acc:ZDB-GENE-040824-3]
29. neurod6a ENSDARG00000040008 17 1.555 - - - - 0.834 - - 0.721 - neuronal differentiation 6a [Source:ZFIN;Acc:ZDB-GENE-010608-1]
30. SLC29A4 ENSDARG00000059690 470 1.55 0.829 - - - - 0.721 - - - solute carrier family 29 (equilibrative nucleoside transporter), member 4 [Source:ZFIN;Acc:ZDB-GENE-070112-1932]
31. zgc:174697 zgc:174697 128 1.547 0.729 - - - - 0.818 - - -
32. kcnip1b ENSDARG00000034808, ENSDARG00000111766 136 1.542 - - - - - 0.809 - 0.733 - Kv channel interacting protein 1 b [Source:ZFIN;Acc:ZDB-GENE-041212-57]
33. hcfc1a ENSDARG00000015990, ENSDARG00000111404 59 1.542 - - - - 0.751 0.791 - - - host cell factor C1a [Source:ZFIN;Acc:ZDB-GENE-030912-10]
34. GRIN2B GRIN2B 140 1.541 0.723 - - - - 0.818 - - -
35. wibg wibg 2 1.535 - - - - 0.818 - - 0.717 -
36. hesx1 ENSDARG00000060734 2 1.533 - - - - 0.818 - - 0.715 - HESX homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-990415-130]
37. ek1 ENSDARG00000020080 742 1.53 - - - 0.762 - 0.768 - - - eph-like kinase 1 [Source:ZFIN;Acc:ZDB-GENE-990415-58]
38. si:dkey-22o22.2 ENSDARG00000102445 149 1.513 0.703 - - - - 0.810 - - - si:dkey-22o22.2 [Source:ZFIN;Acc:ZDB-GENE-100922-84]
39. wu:fd44f01 wu:fd44f01 391 1.497 0.794 - - - - 0.703 - - -
40. CT990561.1 ENSDARG00000058284 566 1.493 - - - 0.705 - 0.788 - - - EPH receptor A5 [Source:NCBI gene;Acc:797595]
41. synpr ENSDARG00000044278 20 1.484 - - - 0.707 - - - 0.777 - synaptoporin [Source:ZFIN;Acc:ZDB-GENE-030616-625]
42. espl1 ENSDARG00000075354 818 1.483 0.705 - - - - 0.778 - - - extra spindle pole bodies like 1, separase [Source:ZFIN;Acc:ZDB-GENE-030131-5188]
43. chrnb3a ENSDARG00000052764, ENSDARG00000112769 139 1.483 - - - - - 0.748 - 0.735 - cholinergic receptor, nicotinic, beta polypeptide 3a [Source:ZFIN;Acc:ZDB-GENE-040108-1]
44. ftr42 4 1 1.000 - - - - - - - - finTRIM family, member 42
45. myl2b ENSDARG00000053424 226 1 1.000 - - - - - - - - myosin, light chain 2b, regulatory, cardiac, slow [Source:ZFIN;Acc:ZDB-GENE-060331-137]
46. dand5 ENSDARG00000036471 8 1 1.000 - - - - - - - - DAN domain family, member 5 [Source:ZFIN;Acc:ZDB-GENE-040421-2]
47. BX119910.3 BX119910.3 7 1 1.000 - - - - - - - -
48. me1 ENSDARG00000053215 107 1 1.000 - - - - - - - - malic enzyme 1, NADP(+)-dependent, cytosolic [Source:ZFIN;Acc:ZDB-GENE-061013-438]
49. ARSI_1 ARSI_1 38 1 1.000 - - - - - - - -
50. drd2l ENSDARG00000014858 1 1 1.000 - - - - - - - - dopamine receptor D2 like [Source:ZFIN;Acc:ZDB-GENE-030910-1]
51. rgs8 ENSDARG00000070037, ENSDARG00000111478 37 1 1.000 - - - - - - - - regulator of G protein signaling 8 [Source:ZFIN;Acc:ZDB-GENE-040718-264]
52. ptchd4 ENSDARG00000008249 17 1 1.000 - - - - - - - - patched domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-041001-178]
53. CABZ01081294.1 CABZ01081294.1 1 1 1.000 - - - - - - - -
54. GPR22_1 GPR22_1 28 1 1.000 - - - - - - - -
55. si:dkey-34e4.1 ENSDARG00000022085 5 1 1.000 - - - - - - - - si:dkey-34e4.1 [Source:ZFIN;Acc:ZDB-GENE-070705-456]
56. HIST1H2BA ENSDARG00000116654 10 1 1.000 - - - - - - - - histone cluster 1 H2B family member a [Source:HGNC Symbol;Acc:HGNC:18730]
57. tecrl2 tecrl2 11 1 1.000 - - - - - - - -
58. zgc:163077 ENSDARG00000101593 60 1 1.000 - - - - - - - - zgc:163077 [Source:ZFIN;Acc:ZDB-GENE-070521-6]
59. BX000999.2 BX000999.2 2353 1 1.000 - - - - - - - -
60. FGFBP3 FGFBP3 993 1 1.000 - - - - - - - -
61. BX928744.1 BX928744.1 15 1 1.000 - - - - - - - -
62. atxn1b ENSDARG00000060862 345 1 1.000 - - - - - - - - ataxin 1b [Source:ZFIN;Acc:ZDB-GENE-061218-2]
63. DSEL DSEL 1 1 1.000 - - - - - - - -
64. APCDD1 ENSDARG00000098203 10 1 1.000 - - - - - - - - APC down-regulated 1 [Source:HGNC Symbol;Acc:HGNC:15718]
65. htra1b ENSDARG00000014907 146 1 1.000 - - - - - - - - HtrA serine peptidase 1b [Source:ZFIN;Acc:ZDB-GENE-080219-7]
66. EPHB1 ENSDARG00000076757 20 1 1.000 - - - - - - - - EPH receptor B1 [Source:ZFIN;Acc:ZDB-GENE-070912-219]
67. CABZ01064968.2 CABZ01064968.2 20 1 1.000 - - - - - - - -
68. usp47 ENSDARG00000102645 16 1 1.000 - - - - - - - - ubiquitin specific peptidase 47 [Source:ZFIN;Acc:ZDB-GENE-070719-7]
69. gsx2 ENSDARG00000043322, ENSDARG00000116417 329 1 1.000 - - - - - - - - GS homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-041001-114]
70. ca4b ENSDARG00000042293 5 1 1.000 - - - - - - - - carbonic anhydrase IV b [Source:ZFIN;Acc:ZDB-GENE-080815-5]
71. sult4a1 ENSDARG00000101967 205 1 1.000 - - - - - - - - sulfotransferase family 4A, member 1 [Source:ZFIN;Acc:ZDB-GENE-060421-2705]
72. paqr7a ENSDARG00000100462 15 1 1.000 - - - - - - - - progestin and adipoQ receptor family member VII, a [Source:ZFIN;Acc:ZDB-GENE-070705-346]
73. ptf1a ENSDARG00000014479 349 1 1.000 - - - - - - - - pancreas associated transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-030616-579]
74. si:ch211-132b12.7 ENSDARG00000068374 30 1 1.000 - - - - - - - - si:ch211-132b12.7 [Source:ZFIN;Acc:ZDB-GENE-050419-250]
75. znf106b ENSDARG00000091947 108 1 1.000 - - - - - - - - zinc finger protein 106b [Source:ZFIN;Acc:ZDB-GENE-091118-24]
76. KLHL35 ENSDARG00000063577 77 1 1.000 - - - - - - - - kelch-like family member 35 [Source:ZFIN;Acc:ZDB-GENE-091118-66]
77. si:ch1073-296i8.2 ENSDARG00000093773 36 1 1.000 - - - - - - - - si:ch1073-296i8.2 [Source:ZFIN;Acc:ZDB-GENE-110411-9]
78. ch25hl2 ENSDARG00000038728 100 1 1.000 - - - - - - - - cholesterol 25-hydroxylase like 2 [Source:ZFIN;Acc:ZDB-GENE-080204-82]
79. scn1a 8 1 1.000 - - - - - - - - sodium channel, voltage-gated, type I, alpha, transcript variant X1
80. opn5 ENSDARG00000070110 18 1 1.000 - - - - - - - - opsin 5 [Source:ZFIN;Acc:ZDB-GENE-041001-179]
81. asic4b ENSDARG00000004243 31 1 1.000 - - - - - - - - acid-sensing (proton-gated) ion channel family member 4b [Source:ZFIN;Acc:ZDB-GENE-040513-6]
82. si:dkeyp-87e3.3 si:dkeyp-87e3.3 68 1 1.000 - - - - - - - -
83. si:dkey-122c11.4 si:dkey-122c11.4 13 1 1.000 - - - - - - - -
84. CABZ01118678.1 ENSDARG00000091359 2 1 1.000 - - - - - - - - calmodulin-regulated spectrin-associated protein 3-like [Source:NCBI gene;Acc:100007608]
85. si:ch73-155e10.1 si:ch73-155e10.1 13 1 1.000 - - - - - - - -
86. NMUR1 NMUR1 30 1 1.000 - - - - - - - -
87. SNORA38 SNORA38 574 1 1.000 - - - - - - - -
88. mamdc2b ENSDARG00000073695 26 1 1.000 - - - - - - - - MAM domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-091117-16]
89. SLC16A7 ENSDARG00000098258 4 1 1.000 - - - - - - - - solute carrier family 16 member 7 [Source:HGNC Symbol;Acc:HGNC:10928]
90. p2rx3a ENSDARG00000010477, ENSDARG00000115270 6 1 1.000 - - - - - - - - purinergic receptor P2X, ligand-gated ion channel, 3a [Source:ZFIN;Acc:ZDB-GENE-000427-3]
91. AL935181.2 AL935181.2 9 1 1.000 - - - - - - - -
92. gabrb2 ENSDARG00000079586 33 1 1.000 - - - - - - - - gamma-aminobutyric acid (GABA) A receptor, beta 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8196]
93. trpm1a ENSDARG00000011259, ENSDARG00000111200, ENSDARG00000112747 48 1 1.000 - - - - - - - - transient receptor potential cation channel, subfamily M, member 1a [Source:ZFIN;Acc:ZDB-GENE-070112-1372]
94. CR318593.1_1 CR318593.1_1 8 1 1.000 - - - - - - - -
95. si:dkey-9i23.6 ENSDARG00000094678 58 1 1.000 - - - - - - - - si:dkey-9i23.6 [Source:ZFIN;Acc:ZDB-GENE-090313-365]
96. scd ENSDARG00000033662 146 1 1.000 - - - - - - - - stearoyl-CoA desaturase (delta-9-desaturase) [Source:ZFIN;Acc:ZDB-GENE-031106-3]
97. si:dkey-217f16.3 si:dkey-217f16.3 1 1 1.000 - - - - - - - -
98. btbd3a ENSDARG00000005544 595 1 1.000 - - - - - - - - BTB (POZ) domain containing 3a [Source:ZFIN;Acc:ZDB-GENE-090312-7]
99. FP017295.1 ENSDARG00000091185 22 1 1.000 - - - - - - - -
100. cntn5 ENSDARG00000021584 30 1 1.000 - - - - - - - - contactin 5 [Source:ZFIN;Acc:ZDB-GENE-030131-5640]

There are 1332 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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