Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for shox2

Gene Name Gene ID Reads Annotation
shox2 ENSDARG00000075713 104 short stature homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1457]










Genes with expression patterns similar to shox2

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. shox2 ENSDARG00000075713 104 7 1.000 - 1.000 1.000 1.000 1.000 - 1.000 1.000 short stature homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1457]
2. si:dkey-4m13.3 6 1.843 1.000 - - 0.843 - - - - - si:dkey-4m13.3
3. BX470254.1_1 ENSDARG00000097402 50 1.824 1.000 - - - - 0.824 - - -
4. si:dkey-179k24.3 si:dkey-179k24.3 3 1.818 1.000 - - - 0.818 - - - -
5. MPPED1 ENSDARG00000088181 117 1.804 1.000 - - - - - - 0.804 - metallophosphoesterase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-111104-1]
6. si:ch211-120c15.3 ENSDARG00000101807 19 1.772 0.916 - - 0.856 - - - - - si:ch211-120c15.3 [Source:ZFIN;Acc:ZDB-GENE-110913-99]
7. slc8a4a ENSDARG00000055154 90 1.767 0.946 - - - - 0.821 - - - solute carrier family 8 (sodium/calcium exchanger), member 4a [Source:ZFIN;Acc:ZDB-GENE-060110-2]
8. crygn2 ENSDARG00000030411 2551 1.737 0.913 - - 0.824 - - - - - crystallin, gamma N2 [Source:ZFIN;Acc:ZDB-GENE-040801-16]
9. scrt1b ENSDARG00000040214, ENSDARG00000110984 533 1.733 1.000 - - - - 0.733 - - - scratch family zinc finger 1b [Source:ZFIN;Acc:ZDB-GENE-050327-72]
10. sprb ENSDARG00000058553 1694 1.724 0.872 - - - - 0.852 - - - sepiapterin reductase b [Source:ZFIN;Acc:ZDB-GENE-070719-1]
11. CU367845.1_1 CU367845.1_1 43 1.717 - - - 0.843 0.874 - - - -
12. ccdc157 ENSDARG00000056279 31 1.714 1.000 - - - 0.714 - - - - coiled-coil domain containing 157 [Source:ZFIN;Acc:ZDB-GENE-030616-155]
13. entpd3 ENSDARG00000035309 263 1.703 0.875 - - - - 0.828 - - - ectonucleoside triphosphate diphosphohydrolase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6186]
14. arf3a ENSDARG00000070539 29 1.689 - - - 0.863 - 0.826 - - - ADP-ribosylation factor 3a [Source:ZFIN;Acc:ZDB-GENE-040801-176]
15. CR318624.1 ENSDARG00000094618 5 1.667 - - - 0.843 0.824 - - - -
16. SLC36A4 ENSDARG00000039661 175 1.666 0.853 - - - - 0.813 - - - solute carrier family 36 (proton/amino acid symporter), member 4 [Source:ZFIN;Acc:ZDB-GENE-050309-239]
17. crygm2d4 ENSDARG00000087164, ENSDARG00000115295 138 1.662 - - - 0.828 0.834 - - - - crystallin, gamma M2d4 [Source:ZFIN;Acc:ZDB-GENE-060918-3]
18. CABZ01030262.1 CABZ01030262.1 11 1.653 - - - - 0.818 0.835 - - -
19. POLR2M ENSDARG00000074968, ENSDARG00000113507 137 1.645 0.905 - - - - 0.740 - - - RNA polymerase II subunit M [Source:ZFIN;Acc:ZDB-GENE-160728-95]
20. CR936200.1 CR936200.1 327 1.628 0.876 - - - - 0.752 - - -
21. KLHL14 ENSDARG00000045275 155 1.627 0.773 - - - - 0.854 - - - kelch-like family member 14 [Source:ZFIN;Acc:ZDB-GENE-091204-223]
22. aatkb ENSDARG00000104442 392 1.607 0.778 - - - - 0.829 - - - apoptosis-associated tyrosine kinase b [Source:ZFIN;Acc:ZDB-GENE-100812-6]
23. olig4 ENSDARG00000052610, ENSDARG00000116678 1704 1.594 0.801 - - - - 0.793 - - - oligodendrocyte transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-030131-3580]
24. CU469509.2 CU469509.2 4 1.594 - - - 0.776 0.818 - - - -
25. BCL2 BCL2 122 1.582 0.769 - - - - 0.813 - - -
26. npb ENSDARG00000078828 230 1.576 0.740 - - 0.836 - - - - - neuropeptide B [Source:ZFIN;Acc:ZDB-GENE-040107-40]
27. celf3b ENSDARG00000006983 171 1.575 0.765 - - 0.810 - - - - - cugbp, Elav-like family member 3b [Source:ZFIN;Acc:ZDB-GENE-110408-50]
28. rfc4 ENSDARG00000042458 2 1.558 - - - 0.843 - - - 0.715 - replication factor C (activator 1) 4 [Source:ZFIN;Acc:ZDB-GENE-040824-3]
29. neurod6a ENSDARG00000040008 17 1.555 - - - - 0.834 - - 0.721 - neuronal differentiation 6a [Source:ZFIN;Acc:ZDB-GENE-010608-1]
30. SLC29A4 ENSDARG00000059690 470 1.55 0.829 - - - - 0.721 - - - solute carrier family 29 (equilibrative nucleoside transporter), member 4 [Source:ZFIN;Acc:ZDB-GENE-070112-1932]
31. zgc:174697 zgc:174697 128 1.547 0.729 - - - - 0.818 - - -
32. hcfc1a ENSDARG00000015990, ENSDARG00000111404 59 1.542 - - - - 0.751 0.791 - - - host cell factor C1a [Source:ZFIN;Acc:ZDB-GENE-030912-10]
33. kcnip1b ENSDARG00000034808, ENSDARG00000111766 136 1.542 - - - - - 0.809 - 0.733 - Kv channel interacting protein 1 b [Source:ZFIN;Acc:ZDB-GENE-041212-57]
34. GRIN2B GRIN2B 140 1.541 0.723 - - - - 0.818 - - -
35. wibg wibg 2 1.535 - - - - 0.818 - - 0.717 -
36. hesx1 ENSDARG00000060734 2 1.533 - - - - 0.818 - - 0.715 - HESX homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-990415-130]
37. ek1 ENSDARG00000020080 742 1.53 - - - 0.762 - 0.768 - - - eph-like kinase 1 [Source:ZFIN;Acc:ZDB-GENE-990415-58]
38. si:dkey-22o22.2 ENSDARG00000102445 149 1.513 0.703 - - - - 0.810 - - - si:dkey-22o22.2 [Source:ZFIN;Acc:ZDB-GENE-100922-84]
39. wu:fd44f01 wu:fd44f01 391 1.497 0.794 - - - - 0.703 - - -
40. CT990561.1 ENSDARG00000058284 566 1.493 - - - 0.705 - 0.788 - - - EPH receptor A5 [Source:NCBI gene;Acc:797595]
41. synpr ENSDARG00000044278 20 1.484 - - - 0.707 - - - 0.777 - synaptoporin [Source:ZFIN;Acc:ZDB-GENE-030616-625]
42. chrnb3a ENSDARG00000052764, ENSDARG00000112769 139 1.483 - - - - - 0.748 - 0.735 - cholinergic receptor, nicotinic, beta polypeptide 3a [Source:ZFIN;Acc:ZDB-GENE-040108-1]
43. espl1 ENSDARG00000075354 818 1.483 0.705 - - - - 0.778 - - - extra spindle pole bodies like 1, separase [Source:ZFIN;Acc:ZDB-GENE-030131-5188]
44. msxa msxa 263 1 1.000 - - - - - - - -
45. BX000999.2 BX000999.2 2353 1 1.000 - - - - - - - -
46. gsx2 ENSDARG00000043322, ENSDARG00000116417 329 1 1.000 - - - - - - - - GS homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-041001-114]
47. opn5 ENSDARG00000070110 18 1 1.000 - - - - - - - - opsin 5 [Source:ZFIN;Acc:ZDB-GENE-041001-179]
48. nmrk1 ENSDARG00000037913 18 1 1.000 - - - - - - - - nicotinamide riboside kinase 1 [Source:ZFIN;Acc:ZDB-GENE-050320-8]
49. zgc:110191 zgc:110191 359 1 1.000 - - - - - - - -
50. myl2b ENSDARG00000053424 226 1 1.000 - - - - - - - - myosin, light chain 2b, regulatory, cardiac, slow [Source:ZFIN;Acc:ZDB-GENE-060331-137]
51. usp47 ENSDARG00000102645 16 1 1.000 - - - - - - - - ubiquitin specific peptidase 47 [Source:ZFIN;Acc:ZDB-GENE-070719-7]
52. prelp ENSDARG00000070597 99 1 1.000 - - - - - - - - proline/arginine-rich end leucine-rich repeat protein [Source:ZFIN;Acc:ZDB-GENE-080327-24]
53. zgc:163077 ENSDARG00000101593 60 1 1.000 - - - - - - - - zgc:163077 [Source:ZFIN;Acc:ZDB-GENE-070521-6]
54. cog1 ENSDARG00000105131 35 1 1.000 - - - - - - - - component of oligomeric golgi complex 1 [Source:ZFIN;Acc:ZDB-GENE-050302-128]
55. figf 48 1 1.000 - - - - - - - - c-fos induced growth factor, transcript variant X2
56. si:ch211-152l15.4 si:ch211-152l15.4 13 1 1.000 - - - - - - - -
57. si:dkey-57k2.7 ENSDARG00000060395, ENSDARG00000095191 5 1 1.000 - - - - - - - - si:dkey-57k2.7 [Source:ZFIN;Acc:ZDB-GENE-070912-559]
58. sez6l ENSDARG00000100594 35 1 1.000 - - - - - - - - seizure related 6 homolog (mouse)-like [Source:ZFIN;Acc:ZDB-GENE-091204-162]
59. fbxo43 ENSDARG00000104186 40 1 1.000 - - - - - - - - F-box protein 43 [Source:ZFIN;Acc:ZDB-GENE-040426-1645]
60. si:dkey-247m21.3 ENSDARG00000001906 1 1 1.000 - - - - - - - - si:dkey-247m21.3 [Source:ZFIN;Acc:ZDB-GENE-091204-249]
61. si:dkey-72l14.7 si:dkey-72l14.7 3 1 1.000 - - - - - - - -
62. DSEL DSEL 1 1 1.000 - - - - - - - -
63. depdc1b 1 1 1.000 - - - - - - - - DEP domain containing 1B
64. AL935181.2 AL935181.2 9 1 1.000 - - - - - - - -
65. SNORA38 SNORA38 574 1 1.000 - - - - - - - -
66. itga8 ENSDARG00000078717 215 1 1.000 - - - - - - - - integrin, alpha 8 [Source:ZFIN;Acc:ZDB-GENE-080220-48]
67. NMUR1 NMUR1 30 1 1.000 - - - - - - - -
68. mlc1 ENSDARG00000063026 29 1 1.000 - - - - - - - - megalencephalic leukoencephalopathy with subcortical cysts 1 [Source:ZFIN;Acc:ZDB-GENE-050419-145]
69. CABZ01064968.2 CABZ01064968.2 20 1 1.000 - - - - - - - -
70. asic4b ENSDARG00000004243 31 1 1.000 - - - - - - - - acid-sensing (proton-gated) ion channel family member 4b [Source:ZFIN;Acc:ZDB-GENE-040513-6]
71. si:dkey-9i23.6 ENSDARG00000094678 58 1 1.000 - - - - - - - - si:dkey-9i23.6 [Source:ZFIN;Acc:ZDB-GENE-090313-365]
72. ebf1b ENSDARG00000069196 64 1 1.000 - - - - - - - - early B cell factor 1b [Source:ZFIN;Acc:ZDB-GENE-090814-2]
73. si:ch211-171h4.7 ENSDARG00000088408 168 1 1.000 - - - - - - - - si:ch211-171h4.7 [Source:ZFIN;Acc:ZDB-GENE-120215-25]
74. ARSI_1 ARSI_1 38 1 1.000 - - - - - - - -
75. CABZ01081748.1 ENSDARG00000102139 31 1 1.000 - - - - - - - - gastrula zinc finger protein XlCGF8.2DB-like [Source:NCBI gene;Acc:100007471]
76. si:ch1073-296i8.2 ENSDARG00000093773 36 1 1.000 - - - - - - - - si:ch1073-296i8.2 [Source:ZFIN;Acc:ZDB-GENE-110411-9]
77. si:ch211-63o20.7 ENSDARG00000042000 93 1 1.000 - - - - - - - - si:ch211-63o20.7 [Source:ZFIN;Acc:ZDB-GENE-041001-194]
78. CNGB1 CNGB1 40 1 1.000 - - - - - - - -
79. BX928744.1 BX928744.1 15 1 1.000 - - - - - - - -
80. ftr42 4 1 1.000 - - - - - - - - finTRIM family, member 42
81. RPS11 ENSDARG00000053058 32 1 1.000 - - - - - - - - ribosomal protein S11 [Source:ZFIN;Acc:ZDB-GENE-040426-2701]
82. CU672227.1 ENSDARG00000105807 15 1 1.000 - - - - - - - -
83. sdccag3 239 1 1.000 - - - - - - - - serologically defined colon cancer antigen 3, transcript variant X2
84. KCNAB1 KCNAB1 918 1 1.000 - - - - - - - -
85. si:ch211-15j1.1 ENSDARG00000093177 1 1 1.000 - - - - - - - - si:ch211-15j1.1 [Source:ZFIN;Acc:ZDB-GENE-081031-25]
86. CIR1 ENSDARG00000099733 66 1 1.000 - - - - - - - - corepressor interacting with RBPJ, 1 [Source:HGNC Symbol;Acc:HGNC:24217]
87. FP017295.1 ENSDARG00000091185 22 1 1.000 - - - - - - - -
88. si:dkey-60a16.4 si:dkey-60a16.4 14 1 1.000 - - - - - - - -
89. CU694319.1 CU694319.1 72 1 1.000 - - - - - - - -
90. fam19a5 fam19a5 8 1 1.000 - - - - - - - -
91. bckdhb ENSDARG00000014676 17 1 1.000 - - - - - - - - branched chain keto acid dehydrogenase E1, beta polypeptide [Source:ZFIN;Acc:ZDB-GENE-030124-2]
92. dand5 ENSDARG00000036471 8 1 1.000 - - - - - - - - DAN domain family, member 5 [Source:ZFIN;Acc:ZDB-GENE-040421-2]
93. c6ast1 ENSDARG00000069216 8 1 1.000 - - - - - - - - six-cysteine containing astacin protease 1 [Source:ZFIN;Acc:ZDB-GENE-070621-1]
94. gabrb2 ENSDARG00000079586 33 1 1.000 - - - - - - - - gamma-aminobutyric acid (GABA) A receptor, beta 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8196]
95. dapk3 ENSDARG00000074447 12 1 1.000 - - - - - - - - death-associated protein kinase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-3026]
96. pak1_1 ENSDARG00000103959 28 1 1.000 - - - - - - - - p21 protein (Cdc42/Rac)-activated kinase 1 [Source:ZFIN;Acc:ZDB-GENE-030826-29]
97. CECR6 25 1 1.000 - - - - - - - - cat eye syndrome chromosome region, candidate 6
98. elfn2 elfn2 1 1 1.000 - - - - - - - -
99. CABZ01066717.2 CABZ01066717.2 10 1 1.000 - - - - - - - -
100. cntn5 ENSDARG00000021584 30 1 1.000 - - - - - - - - contactin 5 [Source:ZFIN;Acc:ZDB-GENE-030131-5640]

There are 1332 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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