Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for shox

Gene Name Gene ID Reads Annotation
shox ENSDARG00000025891 338 short stature homeobox [Source:ZFIN;Acc:ZDB-GENE-051030-21]










Genes with expression patterns similar to shox

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. shox ENSDARG00000025891 338 7 1.000 - 1.000 1.000 1.000 1.000 - 1.000 1.000 short stature homeobox [Source:ZFIN;Acc:ZDB-GENE-051030-21]
2. scrt1b ENSDARG00000040214, ENSDARG00000110984 533 1.787 - - - - - - - 0.924 0.863 scratch family zinc finger 1b [Source:ZFIN;Acc:ZDB-GENE-050327-72]
3. si:ch211-197e7.8 si:ch211-197e7.8 4 1.781 1.000 - - - - - - - 0.781
4. si:ch73-386o14.1 si:ch73-386o14.1 82 1.761 1.000 - - - - 0.761 - - -
5. cntnap2b ENSDARG00000074558, ENSDARG00000109616, ENSDARG00000116850 559 1.735 - - - - - - - 0.867 0.868 contactin associated protein like 2b [Source:NCBI gene;Acc:563345]
6. zgc:86723 zgc:86723 299 1.711 1.000 - - 0.711 - - - - -
7. msgn1 ENSDARG00000070546 188 1.702 1.000 - - - - - - - 0.702 mesogenin 1 [Source:ZFIN;Acc:ZDB-GENE-030722-1]
8. irx2a ENSDARG00000001785 262 1.687 0.972 - 0.715 - - - - - - iroquois homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-040426-1446]
9. ZC2HC1C ENSDARG00000070526 14 1.603 0.841 - - - - 0.762 - - - zinc finger, C2HC-type containing 1C [Source:ZFIN;Acc:ZDB-GENE-111020-1]
10. emx2 ENSDARG00000039701 827 1.587 - - - - - - - 0.797 0.790 empty spiracles homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-990415-54]
11. barhl1a ENSDARG00000035508, ENSDARG00000110061, ENSDARG00000112355 374 1.581 0.786 - - - - - - - 0.795 BarH-like homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-050417-212]
12. zfpm2b ENSDARG00000100560 125 1.58 - - - - - - - 0.765 0.815 zinc finger protein, FOG family member 2b [Source:ZFIN;Acc:ZDB-GENE-060130-5]
13. fez1 ENSDARG00000023174 701 1.574 - - - - - - - 0.793 0.781 fasciculation and elongation protein zeta 1 (zygin I) [Source:ZFIN;Acc:ZDB-GENE-040426-2723]
14. pou3f2a ENSDARG00000070220 817 1.574 - - - - - - - 0.781 0.793 POU class 3 homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-980526-139]
15. hmgb1a ENSDARG00000099175, ENSDARG00000114353 17231 1.568 - - - - - - - 0.778 0.790 high mobility group box 1a [Source:ZFIN;Acc:ZDB-GENE-030131-341]
16. BX324132.5 BX324132.5 115 1.566 - - - - - - - 0.808 0.758
17. barhl1b ENSDARG00000019013, ENSDARG00000113145 101 1.565 - - - - - - - 0.812 0.753 BarH-like homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-060118-2]
18. tia1 ENSDARG00000052536, ENSDARG00000114478 4392 1.562 - - - - - - - 0.809 0.753 TIA1 cytotoxic granule-associated RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-1506]
19. si:ch211-202e12.3 401 1.528 - - - - - - - 0.779 0.749 si:ch211-202e12.3, transcript variant X6
20. sox11a ENSDARG00000077811 25 1.51 - - - 0.748 - 0.762 - - - SRY (sex determining region Y)-box 11a [Source:ZFIN;Acc:ZDB-GENE-980526-395]
21. ldb1a ENSDARG00000010137 3035 1.505 - - - - - - - 0.775 0.730 LIM domain binding 1a [Source:ZFIN;Acc:ZDB-GENE-990415-138]
22. clvs2 ENSDARG00000053122 1390 1.504 - - - - - - - 0.771 0.733 clavesin 2 [Source:ZFIN;Acc:ZDB-GENE-041014-313]
23. gpsm1a ENSDARG00000092517 784 1.5 - - - - - - - 0.796 0.704 G protein signaling modulator 1a [Source:ZFIN;Acc:ZDB-GENE-060526-302]
24. TMEM57 TMEM57 260 1.488 - - - - - - - 0.720 0.768
25. slc17a6a ENSDARG00000001127 337 1.484 - - - - - - - 0.737 0.747 solute carrier family 17 (vesicular glutamate transporter), member 6a [Source:ZFIN;Acc:ZDB-GENE-050105-4]
26. marcksa ENSDARG00000004049 2518 1.476 - - - - - - - 0.747 0.729 myristoylated alanine-rich protein kinase C substrate a [Source:ZFIN;Acc:ZDB-GENE-050522-145]
27. lrrn1 ENSDARG00000060115, ENSDARG00000115960 5175 1.47 - - - - - - - 0.731 0.739 leucine rich repeat neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-071126-1]
28. sox4a ENSDARG00000004588, ENSDARG00000096389 2213 1.462 - - - - - - - 0.734 0.728 SRY (sex determining region Y)-box 4a [Source:ZFIN;Acc:ZDB-GENE-030131-8290]
29. ABI3 ABI3 31 1.459 0.753 - - - - 0.706 - - -
30. KCTD17 ENSDARG00000056050 410 1.453 - - - 0.739 - - - 0.714 - potassium channel tetramerization domain containing 17 [Source:ZFIN;Acc:ZDB-GENE-130531-80]
31. gbx2 ENSDARG00000002933, ENSDARG00000116377 633 1.451 - - - - 0.713 - - 0.738 - gastrulation brain homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-020509-2]
32. ELMO1 ENSDARG00000098753 114 1.448 - - - - - - - 0.745 0.703 engulfment and cell motility 1 (ced-12 homolog, C. elegans) [Source:ZFIN;Acc:ZDB-GENE-040426-2069]
33. dmbx1a ENSDARG00000009922 284 1.408 - - 0.701 - - - - 0.707 - diencephalon/mesencephalon homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-020117-1]
34. rtdr1 rtdr1 158 1 1.000 - - - - - - - -
35. zgc:113295_2 ENSDARG00000074768, ENSDARG00000103947 4 1 1.000 - - - - - - - - zgc:113295 [Source:ZFIN;Acc:ZDB-GENE-050320-122]
36. CR759816.1 ENSDARG00000098977 27 1 1.000 - - - - - - - -
37. CABZ01021435.3 CABZ01021435.3 5 1 1.000 - - - - - - - -
38. si:dkey-69c19.1 si:dkey-69c19.1 37 1 1.000 - - - - - - - -
39. hsd3b1 ENSDARG00000069926 35 1 1.000 - - - - - - - - hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 [Source:ZFIN;Acc:ZDB-GENE-081105-30]
40. Mar-03 Mar-03 44 1 1.000 - - - - - - - -
41. hamp2 hamp2 67 1 1.000 - - - - - - - -
42. gpr124 gpr124 25 1 1.000 - - - - - - - -
43. cyp2p6 ENSDARG00000042978 46 1 1.000 - - - - - - - - cytochrome P450, family 2, subfamily P, polypeptide 6 [Source:ZFIN;Acc:ZDB-GENE-040426-790]
44. BX005294.4 BX005294.4 8 1 1.000 - - - - - - - -
45. anpepb ENSDARG00000103878 8 1 1.000 - - - - - - - - alanyl (membrane) aminopeptidase b [Source:ZFIN;Acc:ZDB-GENE-030131-1253]
46. ankdd1b ENSDARG00000025866 51 1 1.000 - - - - - - - - ankyrin repeat and death domain containing 1B [Source:ZFIN;Acc:ZDB-GENE-060526-136]
47. trim35-29 ENSDARG00000055730 24 1 1.000 - - - - - - - - tripartite motif containing 35-29 [Source:ZFIN;Acc:ZDB-GENE-041114-35]
48. GTF3A GTF3A 6 1 1.000 - - - - - - - -
49. pou2f2b pou2f2b 134 1 1.000 - - - - - - - -
50. si:dkeyp-100a1.5 si:dkeyp-100a1.5 8 1 1.000 - - - - - - - -
51. PROC PROC 11 1 1.000 - - - - - - - -
52. dnd dnd 33 1 1.000 - - - - - - - -
53. si:dkey-254e13.6 ENSDARG00000088301 191 1 1.000 - - - - - - - - si:dkey-254e13.6 [Source:ZFIN;Acc:ZDB-GENE-070705-420]
54. PKHD1L1 ENSDARG00000091116 39 1 1.000 - - - - - - - - polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 [Source:ZFIN;Acc:ZDB-GENE-060503-475]
55. sorcs3b ENSDARG00000077349 72 1 1.000 - - - - - - - - sortilin related VPS10 domain containing receptor 3b [Source:ZFIN;Acc:ZDB-GENE-131121-455]
56. cd74a ENSDARG00000009087 20 1 1.000 - - - - - - - - CD74 molecule, major histocompatibility complex, class II invariant chain a [Source:ZFIN;Acc:ZDB-GENE-000901-1]
57. fbxw10 ENSDARG00000086484 11 1 1.000 - - - - - - - - F-box and WD repeat domain containing 10 [Source:ZFIN;Acc:ZDB-GENE-101021-1]
58. si:dkey-211g8.6 ENSDARG00000063088 19 1 1.000 - - - - - - - - si:dkey-211g8.6 [Source:ZFIN;Acc:ZDB-GENE-060503-813]
59. BX323793.1 ENSDARG00000104134 24 1 1.000 - - - - - - - - 1-phosphatidylinositol phosphodiesterase-like [Source:NCBI gene;Acc:100331378]
60. CAMKV CAMKV 11 1 1.000 - - - - - - - -
61. FBXL21 FBXL21 6 1 1.000 - - - - - - - -
62. si:ch211-106h4.9 ENSDARG00000075706 36 1 1.000 - - - - - - - - si:ch211-106h4.9 [Source:ZFIN;Acc:ZDB-GENE-070705-17]
63. CABZ01057633.1 CABZ01057633.1 39 1 1.000 - - - - - - - -
64. prlrb ENSDARG00000045955 12 1 1.000 - - - - - - - - prolactin receptor b [Source:ZFIN;Acc:ZDB-GENE-070705-155]
65. si:dkey-16p6.1_1 ENSDARG00000088245, ENSDARG00000089179, ENSDARG00000090033, ENSDARG00000090192, ENSDARG00000090734, ENSDARG00000091746, ENSDARG00000098189, ENSDARG00000098515, ENSDARG00000099262, ENSDARG00000100061, ENSDARG00000100164, ENSDARG00000101351, ENSDARG00000101689, ENSDARG00000101828, ENSDARG00000102212, ENSDARG00000104416, ENSDARG00000104897, ENSDARG00000105266, ENSDARG00000111518 37 1 1.000 - - - - - - - - si:dkey-16p6.1 [Source:ZFIN;Acc:ZDB-GENE-081103-43]
66. lcp1 ENSDARG00000023188 298 1 1.000 - - - - - - - - lymphocyte cytosolic protein 1 (L-plastin) [Source:ZFIN;Acc:ZDB-GENE-991213-5]
67. CR933820.2 CR933820.2 152 1 1.000 - - - - - - - -
68. si:ch211-273j9.2 si:ch211-273j9.2 79 1 1.000 - - - - - - - -
69. ift81 ENSDARG00000007444 97 1 1.000 - - - - - - - - intraflagellar transport 81 homolog [Source:ZFIN;Acc:ZDB-GENE-040714-3]
70. si:dkey-42i9.8 ENSDARG00000071541 17 1 1.000 - - - - - - - - si:dkey-42i9.8 [Source:ZFIN;Acc:ZDB-GENE-050208-412]
71. C20H8orf82 C20H8orf82 91 1 - - - - - 1.000 - - -
72. ero1l ero1l 66 1 1.000 - - - - - - - -
73. wu:fb64b08 wu:fb64b08 8 1 1.000 - - - - - - - -
74. FP102801.1 FP102801.1 294 1 1.000 - - - - - - - -
75. gtf3ab ENSDARG00000071583, ENSDARG00000116242 58 1 1.000 - - - - - - - - general transcription factor IIIA, b [Source:ZFIN;Acc:ZDB-GENE-030131-7698]
76. or131-1 ENSDARG00000005865 1 1 1.000 - - - - - - - - odorant receptor, family H, subfamily 131, member 1 [Source:ZFIN;Acc:ZDB-GENE-070806-45]
77. si:ch73-30l9.1 ENSDARG00000095891 42 1 1.000 - - - - - - - - si:ch73-30l9.1 [Source:ZFIN;Acc:ZDB-GENE-110411-132]
78. si:ch73-299h12.9 ENSDARG00000104488 81 1 1.000 - - - - - - - - si:ch73-299h12.9 [Source:ZFIN;Acc:ZDB-GENE-081031-87]
79. mipa ENSDARG00000037285, ENSDARG00000116133 507 1 1.000 - - - - - - - - major intrinsic protein of lens fiber a [Source:ZFIN;Acc:ZDB-GENE-040801-41]
80. si:ch211-42i9.5 si:ch211-42i9.5 21 1 1.000 - - - - - - - -
81. guca1c ENSDARG00000030758 9 1 1.000 - - - - - - - - guanylate cyclase activator 1C [Source:ZFIN;Acc:ZDB-GENE-030829-1]
82. RPS6KA2 ENSDARG00000028469 8 1 1.000 - - - - - - - - ribosomal protein S6 kinase, polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-090827-1]
83. LRRC41 LRRC41 11 1 1.000 - - - - - - - -
84. si:dkeyp-79c2.1 42 1 1.000 - - - - - - - - si:dkeyp-79c2.1, transcript variant X2
85. C4H12orf39 C4H12orf39 73 1 1.000 - - - - - - - -
86. CT573253.1 CT573253.1 4 1 1.000 - - - - - - - -
87. pde6c ENSDARG00000100397 49 1 1.000 - - - - - - - - phosphodiesterase 6C, cGMP-specific, cone, alpha prime [Source:ZFIN;Acc:ZDB-GENE-040426-1664]
88. stx3a ENSDARG00000001880 69 1 1.000 - - - - - - - - syntaxin 3A [Source:ZFIN;Acc:ZDB-GENE-040426-1489]
89. exosc4 ENSDARG00000103432 21 1 1.000 - - - - - - - - exosome component 4 [Source:ZFIN;Acc:ZDB-GENE-040426-1702]
90. slc25a6 ENSDARG00000005853, ENSDARG00000113366 99 1 1.000 - - - - - - - - solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 [Source:ZFIN;Acc:ZDB-GENE-070912-446]
91. cbln4 ENSDARG00000061240 67 1 1.000 - - - - - - - - cerebellin 4 precursor [Source:ZFIN;Acc:ZDB-GENE-080204-58]
92. CR318653.1 ENSDARG00000104557 29 1 1.000 - - - - - - - -
93. U3_7 U3_7 4 1 1.000 - - - - - - - -
94. C6H22orf23 C6H22orf23 15 1 1.000 - - - - - - - -
95. U1_48 U1_48 1 1 1.000 - - - - - - - -
96. si:ch211-218o21.4 ENSDARG00000079869 4 1 1.000 - - - - - - - - si:ch211-218o21.4 [Source:ZFIN;Acc:ZDB-GENE-081104-178]
97. bsx ENSDARG00000068976, ENSDARG00000110782 139 1 1.000 - - - - - - - - brain-specific homeobox [Source:ZFIN;Acc:ZDB-GENE-040628-4]
98. g6pcb ENSDARG00000014967 8 1 1.000 - - - - - - - - glucose-6-phosphatase b, catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-081223-2]
99. U8 U8 11 1 1.000 - - - - - - - -
100. PFKL PFKL 9 1 1.000 - - - - - - - -

There are 648 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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