Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for shox

Gene Name Gene ID Reads Annotation
shox ENSDARG00000025891 338 short stature homeobox [Source:ZFIN;Acc:ZDB-GENE-051030-21]










Genes with expression patterns similar to shox

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. shox ENSDARG00000025891 338 7 1.000 - 1.000 1.000 1.000 1.000 - 1.000 1.000 short stature homeobox [Source:ZFIN;Acc:ZDB-GENE-051030-21]
2. scrt1b ENSDARG00000040214, ENSDARG00000110984 533 1.787 - - - - - - - 0.924 0.863 scratch family zinc finger 1b [Source:ZFIN;Acc:ZDB-GENE-050327-72]
3. si:ch211-197e7.8 si:ch211-197e7.8 4 1.781 1.000 - - - - - - - 0.781
4. si:ch73-386o14.1 si:ch73-386o14.1 82 1.761 1.000 - - - - 0.761 - - -
5. cntnap2b ENSDARG00000074558, ENSDARG00000109616, ENSDARG00000116850 559 1.735 - - - - - - - 0.867 0.868 contactin associated protein like 2b [Source:NCBI gene;Acc:563345]
6. zgc:86723 zgc:86723 299 1.711 1.000 - - 0.711 - - - - -
7. msgn1 ENSDARG00000070546 188 1.702 1.000 - - - - - - - 0.702 mesogenin 1 [Source:ZFIN;Acc:ZDB-GENE-030722-1]
8. irx2a ENSDARG00000001785 262 1.687 0.972 - 0.715 - - - - - - iroquois homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-040426-1446]
9. ZC2HC1C ENSDARG00000070526 14 1.603 0.841 - - - - 0.762 - - - zinc finger, C2HC-type containing 1C [Source:ZFIN;Acc:ZDB-GENE-111020-1]
10. emx2 ENSDARG00000039701 827 1.587 - - - - - - - 0.797 0.790 empty spiracles homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-990415-54]
11. barhl1a ENSDARG00000035508, ENSDARG00000110061, ENSDARG00000112355 374 1.581 0.786 - - - - - - - 0.795 BarH-like homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-050417-212]
12. zfpm2b ENSDARG00000100560 125 1.58 - - - - - - - 0.765 0.815 zinc finger protein, FOG family member 2b [Source:ZFIN;Acc:ZDB-GENE-060130-5]
13. fez1 ENSDARG00000023174 701 1.574 - - - - - - - 0.793 0.781 fasciculation and elongation protein zeta 1 (zygin I) [Source:ZFIN;Acc:ZDB-GENE-040426-2723]
14. pou3f2a ENSDARG00000070220 817 1.574 - - - - - - - 0.781 0.793 POU class 3 homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-980526-139]
15. hmgb1a ENSDARG00000099175, ENSDARG00000114353 17231 1.568 - - - - - - - 0.778 0.790 high mobility group box 1a [Source:ZFIN;Acc:ZDB-GENE-030131-341]
16. BX324132.5 BX324132.5 115 1.566 - - - - - - - 0.808 0.758
17. barhl1b ENSDARG00000019013, ENSDARG00000113145 101 1.565 - - - - - - - 0.812 0.753 BarH-like homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-060118-2]
18. tia1 ENSDARG00000052536, ENSDARG00000114478 4392 1.562 - - - - - - - 0.809 0.753 TIA1 cytotoxic granule-associated RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-1506]
19. si:ch211-202e12.3 401 1.528 - - - - - - - 0.779 0.749 si:ch211-202e12.3, transcript variant X6
20. sox11a ENSDARG00000077811 25 1.51 - - - 0.748 - 0.762 - - - SRY (sex determining region Y)-box 11a [Source:ZFIN;Acc:ZDB-GENE-980526-395]
21. ldb1a ENSDARG00000010137 3035 1.505 - - - - - - - 0.775 0.730 LIM domain binding 1a [Source:ZFIN;Acc:ZDB-GENE-990415-138]
22. clvs2 ENSDARG00000053122 1390 1.504 - - - - - - - 0.771 0.733 clavesin 2 [Source:ZFIN;Acc:ZDB-GENE-041014-313]
23. gpsm1a ENSDARG00000092517 784 1.5 - - - - - - - 0.796 0.704 G protein signaling modulator 1a [Source:ZFIN;Acc:ZDB-GENE-060526-302]
24. TMEM57 TMEM57 260 1.488 - - - - - - - 0.720 0.768
25. slc17a6a ENSDARG00000001127 337 1.484 - - - - - - - 0.737 0.747 solute carrier family 17 (vesicular glutamate transporter), member 6a [Source:ZFIN;Acc:ZDB-GENE-050105-4]
26. marcksa ENSDARG00000004049 2518 1.476 - - - - - - - 0.747 0.729 myristoylated alanine-rich protein kinase C substrate a [Source:ZFIN;Acc:ZDB-GENE-050522-145]
27. lrrn1 ENSDARG00000060115, ENSDARG00000115960 5175 1.47 - - - - - - - 0.731 0.739 leucine rich repeat neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-071126-1]
28. sox4a ENSDARG00000004588, ENSDARG00000096389 2213 1.462 - - - - - - - 0.734 0.728 SRY (sex determining region Y)-box 4a [Source:ZFIN;Acc:ZDB-GENE-030131-8290]
29. ABI3 ABI3 31 1.459 0.753 - - - - 0.706 - - -
30. KCTD17 ENSDARG00000056050 410 1.453 - - - 0.739 - - - 0.714 - potassium channel tetramerization domain containing 17 [Source:ZFIN;Acc:ZDB-GENE-130531-80]
31. gbx2 ENSDARG00000002933, ENSDARG00000116377 633 1.451 - - - - 0.713 - - 0.738 - gastrulation brain homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-020509-2]
32. ELMO1 ENSDARG00000098753 114 1.448 - - - - - - - 0.745 0.703 engulfment and cell motility 1 (ced-12 homolog, C. elegans) [Source:ZFIN;Acc:ZDB-GENE-040426-2069]
33. dmbx1a ENSDARG00000009922 284 1.408 - - 0.701 - - - - 0.707 - diencephalon/mesencephalon homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-020117-1]
34. ifitm5 ENSDARG00000105153 132 1 1.000 - - - - - - - - interferon induced transmembrane protein 5 [Source:ZFIN;Acc:ZDB-GENE-030131-8970]
35. als2a ENSDARG00000075111 29 1 1.000 - - - - - - - - amyotrophic lateral sclerosis 2a (juvenile) [Source:ZFIN;Acc:ZDB-GENE-070402-2]
36. si:dkey-258f14.3 ENSDARG00000075974 9 1 1.000 - - - - - - - - si:dkey-258f14.3 [Source:ZFIN;Acc:ZDB-GENE-050809-43]
37. si:dkey-16p6.1_1 ENSDARG00000088245, ENSDARG00000089179, ENSDARG00000090033, ENSDARG00000090192, ENSDARG00000090734, ENSDARG00000091746, ENSDARG00000098189, ENSDARG00000098515, ENSDARG00000099262, ENSDARG00000100061, ENSDARG00000100164, ENSDARG00000101351, ENSDARG00000101689, ENSDARG00000101828, ENSDARG00000102212, ENSDARG00000104416, ENSDARG00000104897, ENSDARG00000105266, ENSDARG00000111518 37 1 1.000 - - - - - - - - si:dkey-16p6.1 [Source:ZFIN;Acc:ZDB-GENE-081103-43]
38. cd74b ENSDARG00000036628 8 1 1.000 - - - - - - - - CD74 molecule, major histocompatibility complex, class II invariant chain b [Source:ZFIN;Acc:ZDB-GENE-990910-10]
39. gpr124 gpr124 25 1 1.000 - - - - - - - -
40. cyp1b1 ENSDARG00000068934, ENSDARG00000113835 196 1 1.000 - - - - - - - - cytochrome P450, family 1, subfamily B, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-030902-1]
41. bcl11ba ENSDARG00000062510 169 1 1.000 - - - - - - - - B cell CLL/lymphoma 11Ba [Source:ZFIN;Acc:ZDB-GENE-061207-62]
42. ZSWIM2 ENSDARG00000075700 8 1 1.000 - - - - - - - - zinc finger, SWIM-type containing 2 [Source:ZFIN;Acc:ZDB-GENE-070719-8]
43. chgb ENSDARG00000076500 42 1 1.000 - - - - - - - - chromogranin B [Source:ZFIN;Acc:ZDB-GENE-070705-268]
44. FBXL21 FBXL21 6 1 1.000 - - - - - - - -
45. pde6c ENSDARG00000100397 49 1 1.000 - - - - - - - - phosphodiesterase 6C, cGMP-specific, cone, alpha prime [Source:ZFIN;Acc:ZDB-GENE-040426-1664]
46. crybb1 ENSDARG00000068507 2255 1 1.000 - - - - - - - - crystallin, beta B1 [Source:ZFIN;Acc:ZDB-GENE-010813-1]
47. Mar-03 Mar-03 44 1 1.000 - - - - - - - -
48. ankdd1b ENSDARG00000025866 51 1 1.000 - - - - - - - - ankyrin repeat and death domain containing 1B [Source:ZFIN;Acc:ZDB-GENE-060526-136]
49. TMPRSS7 5 1 1.000 - - - - - - - - transmembrane protease, serine 7
50. si:dkey-101d6.4 si:dkey-101d6.4 6 1 1.000 - - - - - - - -
51. C4H12orf39 C4H12orf39 73 1 1.000 - - - - - - - -
52. si:ch211-42i9.5 si:ch211-42i9.5 21 1 1.000 - - - - - - - -
53. guca1c ENSDARG00000030758 9 1 1.000 - - - - - - - - guanylate cyclase activator 1C [Source:ZFIN;Acc:ZDB-GENE-030829-1]
54. asb13a.2 ENSDARG00000045765, ENSDARG00000109879 8 1 1.000 - - - - - - - - ankyrin repeat and SOCS box containing 13a, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-041210-88]
55. si:dkeyp-86f8.2 si:dkeyp-86f8.2 5 1 1.000 - - - - - - - -
56. si:dkey-85k15.4 ENSDARG00000095047 25 1 1.000 - - - - - - - - si:dkey-85k15.4 [Source:ZFIN;Acc:ZDB-GENE-100922-242]
57. U8 U8 11 1 1.000 - - - - - - - -
58. wu:fb64b08 wu:fb64b08 8 1 1.000 - - - - - - - -
59. SH2D4A ENSDARG00000041378 6 1 1.000 - - - - - - - - SH2 domain containing 4A [Source:ZFIN;Acc:ZDB-GENE-040426-932]
60. tmc4 ENSDARG00000031757 30 1 1.000 - - - - - - - - transmembrane channel-like 4 [Source:ZFIN;Acc:ZDB-GENE-030131-7489]
61. si:dkeyp-79c2.1 42 1 1.000 - - - - - - - - si:dkeyp-79c2.1, transcript variant X2
62. cd74a ENSDARG00000009087 20 1 1.000 - - - - - - - - CD74 molecule, major histocompatibility complex, class II invariant chain a [Source:ZFIN;Acc:ZDB-GENE-000901-1]
63. sorcs3b ENSDARG00000077349 72 1 1.000 - - - - - - - - sortilin related VPS10 domain containing receptor 3b [Source:ZFIN;Acc:ZDB-GENE-131121-455]
64. myo10l1 ENSDARG00000074723 21 1 1.000 - - - - - - - - myosin X-like 1 [Source:ZFIN;Acc:ZDB-GENE-080425-1]
65. ccdc37 ccdc37 36 1 1.000 - - - - - - - -
66. CU928217.1 CU928217.1 12 1 1.000 - - - - - - - -
67. HIPK1 HIPK1 8 1 1.000 - - - - - - - -
68. myl7 ENSDARG00000019096 1023 1 1.000 - - - - - - - - myosin, light chain 7, regulatory [Source:ZFIN;Acc:ZDB-GENE-991019-3]
69. nisch ENSDARG00000043077 11 1 1.000 - - - - - - - - nischarin [Source:ZFIN;Acc:ZDB-GENE-050208-570]
70. slc4a11 ENSDARG00000075532, ENSDARG00000115789 20 1 1.000 - - - - - - - - solute carrier family 4, sodium borate transporter, member 11 [Source:ZFIN;Acc:ZDB-GENE-090313-183]
71. ms4a17a.9 ENSDARG00000094854 933 1 1.000 - - - - - - - - membrane-spanning 4-domains, subfamily A, member 17A.9 [Source:ZFIN;Acc:ZDB-GENE-050320-79]
72. si:ch211-273j9.2 si:ch211-273j9.2 79 1 1.000 - - - - - - - -
73. ggt1l2.2 ENSDARG00000087054 1 1 1.000 - - - - - - - - gamma-glutamyltransferase 1 like 2.2 [Source:ZFIN;Acc:ZDB-GENE-090312-37]
74. si:dkey-254e13.6 ENSDARG00000088301 191 1 1.000 - - - - - - - - si:dkey-254e13.6 [Source:ZFIN;Acc:ZDB-GENE-070705-420]
75. U1_48 U1_48 1 1 1.000 - - - - - - - -
76. TRIM35_12 TRIM35_12 2 1 1.000 - - - - - - - -
77. PROC PROC 11 1 1.000 - - - - - - - -
78. lcp1 ENSDARG00000023188 298 1 1.000 - - - - - - - - lymphocyte cytosolic protein 1 (L-plastin) [Source:ZFIN;Acc:ZDB-GENE-991213-5]
79. OTUD7A ENSDARG00000045556 1 1 1.000 - - - - - - - - OTU deubiquitinase 7A [Source:HGNC Symbol;Acc:HGNC:20718]
80. BX005294.4 BX005294.4 8 1 1.000 - - - - - - - -
81. stx3a ENSDARG00000001880 69 1 1.000 - - - - - - - - syntaxin 3A [Source:ZFIN;Acc:ZDB-GENE-040426-1489]
82. si:ch211-106h4.9 ENSDARG00000075706 36 1 1.000 - - - - - - - - si:ch211-106h4.9 [Source:ZFIN;Acc:ZDB-GENE-070705-17]
83. PKHD1L1 ENSDARG00000091116 39 1 1.000 - - - - - - - - polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 [Source:ZFIN;Acc:ZDB-GENE-060503-475]
84. CR759816.1 ENSDARG00000098977 27 1 1.000 - - - - - - - -
85. rtdr1 rtdr1 158 1 1.000 - - - - - - - -
86. si:ch73-30l9.1 ENSDARG00000095891 42 1 1.000 - - - - - - - - si:ch73-30l9.1 [Source:ZFIN;Acc:ZDB-GENE-110411-132]
87. xrra1 ENSDARG00000089578 18 1 1.000 - - - - - - - - X-ray radiation resistance associated 1 [Source:ZFIN;Acc:ZDB-GENE-101216-2]
88. crybb1l1 ENSDARG00000007576 1020 1 1.000 - - - - - - - - crystallin, beta B1, like 1 [Source:ZFIN;Acc:ZDB-GENE-100112-3]
89. CR933820.2 CR933820.2 152 1 1.000 - - - - - - - -
90. adrb3b ENSDARG00000052919 16 1 1.000 - - - - - - - - adrenoceptor beta 3b [Source:ZFIN;Acc:ZDB-GENE-081022-154]
91. CR318653.1 ENSDARG00000104557 29 1 1.000 - - - - - - - -
92. si:dkey-69c19.1 si:dkey-69c19.1 37 1 1.000 - - - - - - - -
93. myo1f ENSDARG00000078734 100 1 1.000 - - - - - - - - myosin IF [Source:ZFIN;Acc:ZDB-GENE-081104-506]
94. hsd3b1 ENSDARG00000069926 35 1 1.000 - - - - - - - - hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 [Source:ZFIN;Acc:ZDB-GENE-081105-30]
95. CR391995.1 ENSDARG00000098041 48 1 1.000 - - - - - - - -
96. g6pcb ENSDARG00000014967 8 1 1.000 - - - - - - - - glucose-6-phosphatase b, catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-081223-2]
97. hrh3 ENSDARG00000035942 32 1 1.000 - - - - - - - - histamine receptor H3 [Source:ZFIN;Acc:ZDB-GENE-040724-204]
98. gbp4 ENSDARG00000068857, ENSDARG00000112635 55 1 1.000 - - - - - - - - guanylate binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-060531-46]
99. CABZ01021435.3 CABZ01021435.3 5 1 1.000 - - - - - - - -
100. esyt1b ENSDARG00000014239 8 1 1.000 - - - - - - - - extended synaptotagmin-like protein 1b [Source:ZFIN;Acc:ZDB-GENE-040724-209]

There are 648 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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