Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for shmt2

Gene Name Gene ID Reads Annotation
shmt2 ENSDARG00000104414 4276 serine hydroxymethyltransferase 2 (mitochondrial) [Source:ZFIN;Acc:ZDB-GENE-071213-1]










Genes with expression patterns similar to shmt2

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. shmt2 ENSDARG00000104414 4276 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 serine hydroxymethyltransferase 2 (mitochondrial) [Source:ZFIN;Acc:ZDB-GENE-071213-1]
2. FBXO34 ENSDARG00000071259 4707 2.653 - 0.964 - - - 0.791 0.898 - - F-box protein 34 [Source:ZFIN;Acc:ZDB-GENE-030131-2194]
3. ddt ENSDARG00000044751, ENSDARG00000109625 7433 2.558 - 0.961 - - - 0.885 0.712 - - D-dopachrome tautomerase [Source:ZFIN;Acc:ZDB-GENE-040625-160]
4. fam83h fam83h 1448 2.476 - 0.832 - - - 0.730 0.914 - -
5. acsl5 ENSDARG00000075931 880 1.863 - - - - - 0.933 0.930 - - acyl-CoA synthetase long chain family member 5 [Source:ZFIN;Acc:ZDB-GENE-040912-169]
6. pgam1a ENSDARG00000005423 3986 1.829 - - - - - 0.931 0.898 - - phosphoglycerate mutase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1827]
7. rgrb ENSDARG00000098724 1546 1.817 - - - - - 0.926 0.891 - - retinal G protein coupled receptor b [Source:ZFIN;Acc:ZDB-GENE-050522-447]
8. urah urah 4152 1.815 - - - - - 0.909 0.906 - -
9. elovl5 ENSDARG00000004979 3032 1.802 - - - - - 0.939 0.863 - - ELOVL fatty acid elongase 5 [Source:ZFIN;Acc:ZDB-GENE-040407-2]
10. si:dkey-12j5.1 ENSDARG00000089480 3198 1.801 - 0.975 - - - 0.826 - - - si:dkey-12j5.1 [Source:ZFIN;Acc:ZDB-GENE-100922-71]
11. fam20a ENSDARG00000079486 1199 1.798 - - - - - 0.883 0.915 - - family with sequence similarity 20, member A [Source:ZFIN;Acc:ZDB-GENE-081022-117]
12. rpia ENSDARG00000056640, ENSDARG00000110576 8288 1.796 - 0.884 - - - 0.912 - - - ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase) [Source:ZFIN;Acc:ZDB-GENE-041114-24]
13. gskip ENSDARG00000038099 5059 1.784 - - - - - 0.930 0.854 - - gsk3b interacting protein [Source:ZFIN;Acc:ZDB-GENE-040426-2777]
14. MPC2 ENSDARG00000024478 4194 1.779 - 0.845 - - - 0.934 - - - mitochondrial pyruvate carrier 2 [Source:ZFIN;Acc:ZDB-GENE-030131-330]
15. slc25a25a ENSDARG00000010572 1240 1.772 - - - - - 0.873 0.899 - - solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25a [Source:ZFIN;Acc:ZDB-GENE-040426-2396]
16. APOB_1 APOB_1 2217 1.772 - - - - - 0.944 0.828 - -
17. cd82a ENSDARG00000019098 6761 1.767 - 0.982 - - - - 0.785 - - CD82 molecule a [Source:ZFIN;Acc:ZDB-GENE-030131-2818]
18. slc11a2 ENSDARG00000024295 3197 1.754 - - - - - 0.825 0.929 - - solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2 [Source:ZFIN;Acc:ZDB-GENE-021115-1]
19. ak2 ENSDARG00000005926 7598 1.746 - - - - - 0.879 0.867 - - adenylate kinase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-512]
20. mid1ip1l ENSDARG00000018145 2789 1.738 - 0.821 - - - 0.917 - - - MID1 interacting protein 1, like [Source:ZFIN;Acc:ZDB-GENE-030131-1697]
21. gmps ENSDARG00000079848 8217 1.732 - 0.830 - - - - 0.902 - - guanine monophosphate synthase [Source:ZFIN;Acc:ZDB-GENE-040426-1503]
22. c8b ENSDARG00000039517 1731 1.73 - - - - - 0.848 0.882 - - complement component 8, beta polypeptide [Source:ZFIN;Acc:ZDB-GENE-070912-163]
23. serping1 ENSDARG00000058053 1344 1.726 - - - - - 0.908 0.818 - - serpin peptidase inhibitor, clade G (C1 inhibitor), member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1262]
24. bdh2 ENSDARG00000052696 1157 1.721 - - - - - 0.806 0.915 - - 3-hydroxybutyrate dehydrogenase, type 2 [Source:ZFIN;Acc:ZDB-GENE-050417-343]
25. lipf ENSDARG00000018529 1849 1.719 - - - - - 0.830 0.889 - - lipase, gastric [Source:ZFIN;Acc:ZDB-GENE-040426-2737]
26. FAM110D FAM110D 3632 1.718 - - - - - 0.836 0.882 - -
27. zgc:92380 ENSDARG00000041339 1867 1.706 - - - - - 0.788 0.918 - - zgc:92380 [Source:ZFIN;Acc:ZDB-GENE-040801-221]
28. tmod2 ENSDARG00000002571 5119 1.704 - - - - - 0.765 0.939 - - tropomodulin 2 [Source:ZFIN;Acc:ZDB-GENE-040912-185]
29. pex14 ENSDARG00000028322 1087 1.701 - - - - - 0.842 0.859 - - peroxisomal biogenesis factor 14 [Source:ZFIN;Acc:ZDB-GENE-060130-169]
30. gstal gstal 1865 1.694 - - - - - 0.773 0.921 - -
31. kng1 ENSDARG00000022372, ENSDARG00000112486 2503 1.689 - - - - - 0.930 0.759 - - kininogen 1 [Source:ZFIN;Acc:ZDB-GENE-041010-56]
32. grhprb ENSDARG00000019986, ENSDARG00000109547 3233 1.678 - - - - - 0.895 0.783 - - glyoxylate reductase/hydroxypyruvate reductase b [Source:ZFIN;Acc:ZDB-GENE-040426-1847]
33. atf6 ENSDARG00000012656 3873 1.675 - 0.831 - - - - 0.844 - - activating transcription factor 6 [Source:ZFIN;Acc:ZDB-GENE-041014-328]
34. sord ENSDARG00000053405 2406 1.672 - 0.809 - - - 0.863 - - - sorbitol dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-040426-1231]
35. PRODH2 PRODH2 1153 1.667 - - - - - 0.769 0.898 - -
36. serpina1l ENSDARG00000090850 10625 1.666 - 0.933 - - - 0.733 - - - serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1, like [Source:ZFIN;Acc:ZDB-GENE-040721-3]
37. psma3 ENSDARG00000086618 6200 1.663 - 0.831 - - - - 0.832 - - proteasome subunit alpha 3 [Source:ZFIN;Acc:ZDB-GENE-050913-120]
38. fbp1b ENSDARG00000020364, ENSDARG00000111266 10050 1.661 - 0.749 - - - 0.912 - - - fructose-1,6-bisphosphatase 1b [Source:ZFIN;Acc:ZDB-GENE-021206-11]
39. mfsd8 ENSDARG00000103235, ENSDARG00000115968 2067 1.659 - - - - - 0.792 0.867 - - major facilitator superfamily domain containing 8 [Source:ZFIN;Acc:ZDB-GENE-060818-29]
40. sfxn2 ENSDARG00000017960, ENSDARG00000111267 3869 1.655 - 0.835 - - - 0.820 - - - sideroflexin 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2831]
41. creb3l3 creb3l3 1981 1.652 - 0.771 - - - 0.881 - - -
42. plg ENSDARG00000023111 2429 1.643 - - - - - 0.853 0.790 - - plasminogen [Source:ZFIN;Acc:ZDB-GENE-030131-1411]
43. gdpd1 ENSDARG00000017261, ENSDARG00000111194 2853 1.637 - 0.808 - - - 0.829 - - - glycerophosphodiester phosphodiesterase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040822-22]
44. cdc42 ENSDARG00000044573 11795 1.629 0.761 - - - - - 0.868 - - cell division cycle 42 [Source:ZFIN;Acc:ZDB-GENE-030131-8783]
45. aldh2.1 ENSDARG00000089924 2883 1.629 - - - - - 0.741 0.888 - - aldehyde dehydrogenase 2 family member, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1262]
46. lnx2b ENSDARG00000071478 654 1.628 - - - - - 0.760 0.868 - - ligand of numb-protein X 2b [Source:ZFIN;Acc:ZDB-GENE-040426-2500]
47. trnau1apa ENSDARG00000101323 911 1.624 - 0.845 - - - 0.779 - - - tRNA selenocysteine 1 associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-050522-502]
48. sat1a.1 ENSDARG00000035652 2941 1.622 - - - - - 0.911 0.711 - - spermidine/spermine N1-acetyltransferase 1a, duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050913-41]
49. si:dkey-69o16.5 ENSDARG00000070057 3628 1.622 - - - - - 0.765 0.857 - - si:dkey-69o16.5 [Source:ZFIN;Acc:ZDB-GENE-081104-432]
50. myof ENSDARG00000006112 618 1.618 - - - - - 0.757 0.861 - - myoferlin [Source:ZFIN;Acc:ZDB-GENE-040426-1138]
51. rgs4 ENSDARG00000070047, ENSDARG00000116319 2461 1.609 - - - - - 0.859 0.750 - - regulator of G protein signaling 4 [Source:ZFIN;Acc:ZDB-GENE-030131-9839]
52. oclnb ENSDARG00000003091 3729 1.609 - - - - - 0.756 0.853 - - occludin b [Source:ZFIN;Acc:ZDB-GENE-041212-43]
53. adpgk2 ENSDARG00000062785 8229 1.608 - - - - - 0.775 0.833 - - ADP-dependent glucokinase 2 [Source:ZFIN;Acc:ZDB-GENE-090609-3]
54. etfa ENSDARG00000101631 2946 1.605 - - - - - 0.732 0.873 - - electron transfer flavoprotein subunit alpha [Source:ZFIN;Acc:ZDB-GENE-030131-4449]
55. rbp4l ENSDARG00000044684 3292 1.604 - - - - - 0.857 0.747 - - retinol binding protein 4, like [Source:ZFIN;Acc:ZDB-GENE-030131-7591]
56. mdm2 ENSDARG00000033443, ENSDARG00000115677 2480 1.602 - 0.794 - - - 0.808 - - - MDM2 oncogene, E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-990415-153]
57. FP326665.1 FP326665.1 1893 1.6 - 0.769 - - - 0.831 - - -
58. ces2 ENSDARG00000041569, ENSDARG00000110630 5541 1.6 - 0.741 - - - 0.859 - - - carboxylesterase 2 (intestine, liver) [Source:ZFIN;Acc:ZDB-GENE-061013-99]
59. PRODH_1 PRODH_1 3400 1.6 - - - - - 0.719 0.881 - -
60. supt4h1 ENSDARG00000113969 1024 1.591 - - - - - 0.750 0.841 - - SPT4 homolog, DSIF elongation factor subunit [Source:ZFIN;Acc:ZDB-GENE-040718-214]
61. emc3 ENSDARG00000020607 3406 1.585 0.745 0.840 - - - - - - - ER membrane protein complex subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2904]
62. ndrg1a ENSDARG00000032849 2406 1.581 - - - - - 0.791 0.790 - - N-myc downstream regulated 1a [Source:ZFIN;Acc:ZDB-GENE-030826-34]
63. ACTN4_1 ACTN4_1 8550 1.578 - - - - - 0.821 0.757 - -
64. svilb ENSDARG00000014651 4449 1.573 - - - - - 0.798 0.775 - - supervillin b [Source:ZFIN;Acc:ZDB-GENE-081104-411]
65. zgc:152830 ENSDARG00000079932 12194 1.572 - - - - - 0.866 - 0.706 - zgc:152830 [Source:ZFIN;Acc:ZDB-GENE-090312-55]
66. tmpoa ENSDARG00000007315 3638 1.571 0.739 0.832 - - - - - - - thymopoietin a [Source:ZFIN;Acc:ZDB-GENE-030131-6003]
67. zgc:161969 ENSDARG00000041359 898 1.571 - - - - - 0.734 0.837 - - zgc:161969 [Source:ZFIN;Acc:ZDB-GENE-030131-2597]
68. sept8a ENSDARG00000032606 2737 1.57 - 0.814 - - - 0.756 - - - septin 8a [Source:ZFIN;Acc:ZDB-GENE-030131-309]
69. gpd1c ENSDARG00000036942 869 1.569 - 0.844 - - - 0.725 - - - glycerol-3-phosphate dehydrogenase 1c [Source:ZFIN;Acc:ZDB-GENE-040426-2576]
70. NUAK1_1 NUAK1_1 1782 1.569 - - - - - 0.707 0.862 - -
71. ccsapb ENSDARG00000040085 784 1.566 - 0.842 - - - 0.724 - - - centriole, cilia and spindle-associated protein b [Source:ZFIN;Acc:ZDB-GENE-081107-51]
72. nhp2l1a nhp2l1a 993 1.564 - - - - - 0.732 0.832 - -
73. tlk2 ENSDARG00000010779, ENSDARG00000112127 751 1.551 0.706 0.845 - - - - - - - tousled-like kinase 2 [Source:ZFIN;Acc:ZDB-GENE-060623-36]
74. mthfd1b ENSDARG00000040492 3784 1.549 - 0.786 - - - 0.763 - - - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1b [Source:ZFIN;Acc:ZDB-GENE-020905-4]
75. etfb ENSDARG00000009250 13036 1.544 - 0.763 - - - 0.781 - - - electron transfer flavoprotein subunit beta [Source:ZFIN;Acc:ZDB-GENE-040426-1931]
76. ywhah ENSDARG00000005560 11079 1.543 - 0.787 - - - - 0.756 - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide [Source:ZFIN;Acc:ZDB-GENE-040426-2191]
77. NCOA7_1 NCOA7_1 3222 1.541 - 0.798 - - - 0.743 - - -
78. ivns1abpa ENSDARG00000031100 3806 1.53 - - - - - 0.784 0.746 - - influenza virus NS1A binding protein a [Source:ZFIN;Acc:ZDB-GENE-031222-2]
79. hn1l hn1l 8861 1.511 - - - - - 0.770 0.741 - -
80. fetub ENSDARG00000053973 43520 1.511 - - - - - 0.730 0.781 - - fetuin B [Source:ZFIN;Acc:ZDB-GENE-050208-4]
81. rbp2b ENSDARG00000093774, ENSDARG00000112080 1200 1.499 - - - - - 0.794 0.705 - - retinol binding protein 2b, cellular [Source:ZFIN;Acc:ZDB-GENE-040715-7]
82. atpv0e1 atpv0e1 1957 1.471 - 0.751 - - - 0.720 - - -
83. rbp1a rbp1a 9847 1.419 - 0.716 - - - 0.703 - - -
84. boc ENSDARG00000074335 4832 0.995 - 0.995 - - - - - - - BOC cell adhesion associated, oncogene regulated [Source:ZFIN;Acc:ZDB-GENE-030131-6560]
85. pacsin3 ENSDARG00000099339 4668 0.993 - 0.993 - - - - - - - protein kinase C and casein kinase substrate in neurons 3 [Source:ZFIN;Acc:ZDB-GENE-040426-984]
86. psmb3 ENSDARG00000013938 10744 0.988 - 0.988 - - - - - - - proteasome subunit beta 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2682]
87. ndufb10 ENSDARG00000028889 7680 0.987 - 0.987 - - - - - - - NADH:ubiquinone oxidoreductase subunit B10 [Source:ZFIN;Acc:ZDB-GENE-040426-1691]
88. st13 ENSDARG00000021973 7787 0.985 - 0.985 - - - - - - - ST13, Hsp70 interacting protein [Source:ZFIN;Acc:ZDB-GENE-030131-5395]
89. plbd1 ENSDARG00000063313 2842 0.973 - 0.973 - - - - - - - phospholipase B domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-050411-22]
90. gnpda1 ENSDARG00000037307, ENSDARG00000109317, ENSDARG00000114846 2191 0.952 - - - - - 0.952 - - - glucosamine-6-phosphate deaminase 1 [Source:ZFIN;Acc:ZDB-GENE-050417-417]
91. myl9b ENSDARG00000008030 7830 0.949 - - - - - 0.949 - - - myosin, light chain 9b, regulatory [Source:ZFIN;Acc:ZDB-GENE-040426-2296]
92. slc16a1 slc16a1 7816 0.949 - - - - - 0.949 - - -
93. isca1 ENSDARG00000051956 5855 0.943 - - - - - 0.943 - - - iron-sulfur cluster assembly 1 [Source:ZFIN;Acc:ZDB-GENE-050626-94]
94. cask cask 3384 0.938 - - - - - 0.938 - - -
95. SLC27A2_1 SLC27A2_1 974 0.936 - - - - - 0.936 - - -
96. akap7 ENSDARG00000043843 3596 0.936 - - - - - 0.936 - - - A kinase (PRKA) anchor protein 7 [Source:ZFIN;Acc:ZDB-GENE-040724-128]
97. taldo1 ENSDARG00000103369 3804 0.936 - - - - - 0.936 - - - transaldolase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3277]
98. zgc:91849 ENSDARG00000104716 237 0.935 - - - - - 0.935 - - - zgc:91849 [Source:ZFIN;Acc:ZDB-GENE-040718-438]
99. slc43a2a ENSDARG00000036848 6798 0.934 - - - - - 0.934 - - - solute carrier family 43 (amino acid system L transporter), member 2a [Source:ZFIN;Acc:ZDB-GENE-040426-964]
100. inppl1a ENSDARG00000104222 6256 0.932 - - - - - - 0.932 - - inositol polyphosphate phosphatase-like 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3904]

There are 1272 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA