Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for shmt1

Gene Name Gene ID Reads Annotation
shmt1 ENSDARG00000052816 5463 serine hydroxymethyltransferase 1 (soluble) [Source:ZFIN;Acc:ZDB-GENE-040426-1558]










Genes with expression patterns similar to shmt1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. shmt1 ENSDARG00000052816 5463 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 serine hydroxymethyltransferase 1 (soluble) [Source:ZFIN;Acc:ZDB-GENE-040426-1558]
2. fgg ENSDARG00000037281, ENSDARG00000114705 10817 3.187 0.912 - 0.753 0.710 - 0.812 - - - fibrinogen gamma chain [Source:ZFIN;Acc:ZDB-GENE-040426-1998]
3. myl9b ENSDARG00000008030 7830 2.719 - - 0.876 - 0.888 0.955 - - - myosin, light chain 9b, regulatory [Source:ZFIN;Acc:ZDB-GENE-040426-2296]
4. casc5 1487 2.691 - 0.939 - - 0.854 - - 0.898 - cancer susceptibility candidate 5, transcript variant X3
5. hrsp12 3981 2.633 0.763 - 0.881 - - - 0.989 - - heat-responsive protein 12, transcript variant 1
6. npc1 ENSDARG00000017180 3724 2.612 0.761 - - - - 0.902 - 0.949 - Niemann-Pick disease, type C1 [Source:ZFIN;Acc:ZDB-GENE-030131-3161]
7. kng1 ENSDARG00000022372, ENSDARG00000112486 2503 2.5 0.745 - 0.848 - - 0.907 - - - kininogen 1 [Source:ZFIN;Acc:ZDB-GENE-041010-56]
8. zgc:161979_1 zgc:161979_1 206500 2.497 0.797 - 0.757 - - 0.943 - - -
9. sardh ENSDARG00000058102, ENSDARG00000112110 2150 2.49 0.821 - 0.805 - - 0.864 - - - sarcosine dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-040426-996]
10. mfsd8 ENSDARG00000103235, ENSDARG00000115968 2067 2.483 0.802 - - - 0.874 0.807 - - - major facilitator superfamily domain containing 8 [Source:ZFIN;Acc:ZDB-GENE-060818-29]
11. lgals2b ENSDARG00000038153 2196 2.473 0.742 - - - - 0.869 - 0.862 - lectin, galactoside-binding, soluble, 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1590]
12. ctsba ENSDARG00000055120 18732 2.471 - - 0.759 - - 0.891 0.821 - - cathepsin Ba [Source:ZFIN;Acc:ZDB-GENE-040426-2650]
13. apoa2 ENSDARG00000015866 297380 2.459 0.724 - 0.814 - - 0.921 - - - apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
14. rpe ENSDARG00000005251, ENSDARG00000117024 3865 2.437 0.843 - 0.772 - - 0.822 - - - ribulose-5-phosphate-3-epimerase [Source:ZFIN;Acc:ZDB-GENE-030131-6837]
15. pcbd1 ENSDARG00000031981 3373 2.403 0.777 - 0.773 - - 0.853 - - - pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha [Source:ZFIN;Acc:ZDB-GENE-040426-1787]
16. gata6 ENSDARG00000103589 746 2.392 0.742 - 0.764 - - 0.886 - - - GATA binding protein 6 [Source:ZFIN;Acc:ZDB-GENE-000622-1]
17. apom ENSDARG00000076838 4732 2.376 0.756 - 0.724 - - 0.896 - - - apolipoprotein M [Source:ZFIN;Acc:ZDB-GENE-010605-5]
18. mid1ip1l ENSDARG00000018145 2789 2.373 0.818 - 0.702 - - 0.853 - - - MID1 interacting protein 1, like [Source:ZFIN;Acc:ZDB-GENE-030131-1697]
19. gdpd1 ENSDARG00000017261, ENSDARG00000111194 2853 2.368 0.828 - 0.786 - - 0.754 - - - glycerophosphodiester phosphodiesterase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040822-22]
20. etfb ENSDARG00000009250 13036 2.349 0.772 - 0.754 - - 0.823 - - - electron transfer flavoprotein subunit beta [Source:ZFIN;Acc:ZDB-GENE-040426-1931]
21. mthfd1b ENSDARG00000040492 3784 2.321 0.773 - 0.785 - - 0.763 - - - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1b [Source:ZFIN;Acc:ZDB-GENE-020905-4]
22. CABZ01068208.1 ENSDARG00000112675 414 2.3 0.786 - 0.721 - - 0.793 - - -
23. rnasel3 ENSDARG00000036171, ENSDARG00000116275 3928 1.909 - - - - - 0.945 0.964 - - ribonuclease like 3 [Source:ZFIN;Acc:ZDB-GENE-050809-5]
24. apg3l apg3l 5153 1.879 - 0.935 - - - 0.944 - - -
25. igfbp1a ENSDARG00000099351 1717 1.859 - - - - - - 0.978 0.881 - insulin-like growth factor binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-021231-1]
26. rnaseka ENSDARG00000069461 10304 1.831 0.900 - - - - - - 0.931 - ribonuclease, RNase K a [Source:ZFIN;Acc:ZDB-GENE-060825-301]
27. CPN2 CPN2 682 1.829 - - 0.885 - - 0.944 - - -
28. akr1a1a ENSDARG00000035257, ENSDARG00000109404 548 1.812 - - 0.872 - - 0.940 - - - aldo-keto reductase family 1, member A1a (aldehyde reductase) [Source:ZFIN;Acc:ZDB-GENE-040808-44]
29. h1fx ENSDARG00000054058 4075 1.808 - - - - 0.828 - 0.980 - - H1 histone family, member X [Source:ZFIN;Acc:ZDB-GENE-030131-1228]
30. prkacba ENSDARG00000001782 1340 1.806 - - - - - 0.821 0.985 - - protein kinase, cAMP-dependent, catalytic, beta a [Source:ZFIN;Acc:ZDB-GENE-040426-1351]
31. ptprfa ENSDARG00000103479 1250 1.795 - 0.946 - - - 0.849 - - - protein tyrosine phosphatase, receptor type, f, a [Source:ZFIN;Acc:ZDB-GENE-020107-2]
32. NPR2 ENSDARG00000104393 1875 1.792 - 0.939 - - 0.853 - - - - natriuretic peptide receptor 2 [Source:ZFIN;Acc:ZDB-GENE-141030-2]
33. cdh1 ENSDARG00000102750 8654 1.788 - - - - - - 0.984 0.804 - cadherin 1, type 1, E-cadherin (epithelial) [Source:ZFIN;Acc:ZDB-GENE-010606-1]
34. cst3 ENSDARG00000007795 13753 1.785 0.946 - - - - 0.839 - - - cystatin C (amyloid angiopathy and cerebral hemorrhage) [Source:ZFIN;Acc:ZDB-GENE-030131-373]
35. paxip1 ENSDARG00000005606 1417 1.773 - - - - 0.847 - - 0.926 - PAX interacting (with transcription-activation domain) protein 1 [Source:ZFIN;Acc:ZDB-GENE-041010-214]
36. rbp4l ENSDARG00000044684 3292 1.771 0.844 - - - - 0.927 - - - retinol binding protein 4, like [Source:ZFIN;Acc:ZDB-GENE-030131-7591]
37. pip5k2 pip5k2 5743 1.771 - 0.945 - - 0.826 - - - -
38. gatad2ab ENSDARG00000006192 2461 1.768 - - - - 0.826 - - 0.942 - GATA zinc finger domain containing 2Ab [Source:ZFIN;Acc:ZDB-GENE-040426-2372]
39. mpdu1a ENSDARG00000035562, ENSDARG00000109966 1169 1.757 - - - - - 0.821 - 0.936 - mannose-P-dolichol utilization defect 1a [Source:ZFIN;Acc:ZDB-GENE-040912-9]
40. aqp12 ENSDARG00000043279 1881 1.756 0.805 - - - - 0.951 - - - aquaporin 12 [Source:ZFIN;Acc:ZDB-GENE-040718-310]
41. ak2 ENSDARG00000005926 7598 1.752 - 0.840 - - - 0.912 - - - adenylate kinase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-512]
42. elovl5 ENSDARG00000004979 3032 1.751 0.824 - - - - 0.927 - - - ELOVL fatty acid elongase 5 [Source:ZFIN;Acc:ZDB-GENE-040407-2]
43. degs1 ENSDARG00000007347 2481 1.751 - - - - - 0.765 0.986 - - delta(4)-desaturase, sphingolipid 1 [Source:ZFIN;Acc:ZDB-GENE-030131-5283]
44. APOB_1 APOB_1 2217 1.746 - - 0.782 - - 0.964 - - -
45. slc25a20 ENSDARG00000040401 9258 1.746 - - 0.824 - - 0.922 - - - solute carrier family 25 (carnitine/acylcarnitine translocase), member 20 [Source:ZFIN;Acc:ZDB-GENE-040426-1869]
46. sepp1a 41994 1.745 - - 0.848 - - 0.897 - - - selenoprotein P, plasma, 1a
47. tfa ENSDARG00000016771 30517 1.743 0.849 - - - - 0.894 - - - transferrin-a [Source:ZFIN;Acc:ZDB-GENE-980526-35]
48. nfil3-5 ENSDARG00000094965, ENSDARG00000113345 4657 1.743 - - - - - - 0.983 0.760 - nuclear factor, interleukin 3 regulated, member 5 [Source:ZFIN;Acc:ZDB-GENE-030131-7677]
49. APOB APOB 33858 1.74 0.793 - - - - 0.947 - - -
50. slc43a2b ENSDARG00000061120, ENSDARG00000117188 33657 1.737 0.802 - - - - 0.935 - - - solute carrier family 43 (amino acid system L transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-041212-6]
51. atp6v1f ENSDARG00000045543 3445 1.736 - - - - - 0.852 - 0.884 - ATPase H+ transporting V1 subunit F [Source:ZFIN;Acc:ZDB-GENE-040718-259]
52. acsl4a ENSDARG00000004078 4241 1.734 0.791 - - - - 0.943 - - - acyl-CoA synthetase long chain family member 4a [Source:ZFIN;Acc:ZDB-GENE-040426-1565]
53. cfb ENSDARG00000055278, ENSDARG00000110358 1725 1.73 0.784 - - - - 0.946 - - - complement factor B [Source:ZFIN;Acc:ZDB-GENE-980526-487]
54. f7 ENSDARG00000034862 405 1.729 - - 0.822 - - 0.907 - - - coagulation factor VII [Source:ZFIN;Acc:ZDB-GENE-010814-1]
55. renbp ENSDARG00000008931 1848 1.729 - - 0.891 - - 0.838 - - - renin binding protein [Source:ZFIN;Acc:ZDB-GENE-041212-34]
56. zgc:110239 ENSDARG00000077664 7015 1.723 0.845 - - - 0.878 - - - - zgc:110239 [Source:ZFIN;Acc:ZDB-GENE-050417-107]
57. apoc1l apoc1l 398664 1.722 0.828 - - - - 0.894 - - -
58. ddt ENSDARG00000044751, ENSDARG00000109625 7433 1.72 - - 0.785 - - 0.935 - - - D-dopachrome tautomerase [Source:ZFIN;Acc:ZDB-GENE-040625-160]
59. si:ch211-251f6.6 ENSDARG00000053448 323 1.72 - - 0.837 - - 0.883 - - - si:ch211-251f6.6 [Source:ZFIN;Acc:ZDB-GENE-030131-3219]
60. spns1 ENSDARG00000011925, ENSDARG00000111727 3126 1.717 - - 0.782 - - 0.935 - - - spinster homolog 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-020228-1]
61. slc25a33 ENSDARG00000039931 2794 1.716 0.772 0.944 - - - - - - - solute carrier family 25 (pyrimidine nucleotide carrier), member 33 [Source:ZFIN;Acc:ZDB-GENE-040426-2183]
62. hexb ENSDARG00000034368 3505 1.715 0.830 - - - - 0.885 - - - hexosaminidase B (beta polypeptide) [Source:ZFIN;Acc:ZDB-GENE-030131-2333]
63. sb:cb37 ENSDARG00000041645 2018 1.713 0.791 - - - - 0.922 - - - sb:cb37 [Source:ZFIN;Acc:ZDB-GENE-030131-9800]
64. MPC2 ENSDARG00000024478 4194 1.712 0.731 - - - - 0.981 - - - mitochondrial pyruvate carrier 2 [Source:ZFIN;Acc:ZDB-GENE-030131-330]
65. NCOA7_1 NCOA7_1 3222 1.711 0.830 - - - - 0.881 - - -
66. cyp2aa4 ENSDARG00000098803 1762 1.71 - - - - 0.917 0.793 - - - cytochrome P450, family 2, subfamily AA, polypeptide 4 [Source:ZFIN;Acc:ZDB-GENE-040625-72]
67. chchd2 ENSDARG00000059304, ENSDARG00000112202 7438 1.709 - 0.934 - - 0.775 - - - - coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1737]
68. zgc:136410 ENSDARG00000102241 8433 1.709 0.770 - - - - 0.939 - - - zgc:136410 [Source:ZFIN;Acc:ZDB-GENE-060421-6071]
69. ces3 ENSDARG00000041595, ENSDARG00000114555 647 1.703 - - 0.801 - - 0.902 - - - carboxylesterase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9563]
70. apoa4 apoa4 84813 1.703 - - 0.817 - - 0.886 - - -
71. prdx5 ENSDARG00000055064 27445 1.702 0.819 - - - - 0.883 - - - peroxiredoxin 5 [Source:ZFIN;Acc:ZDB-GENE-050522-159]
72. ndufa8 ENSDARG00000058041, ENSDARG00000111900 5493 1.699 - 0.936 - - 0.763 - - - - NADH:ubiquinone oxidoreductase subunit A8 [Source:ZFIN;Acc:ZDB-GENE-040426-1688]
73. apobb apobb 258472 1.698 0.817 - - - - 0.881 - - -
74. pck2 ENSDARG00000020956, ENSDARG00000110463 4713 1.696 0.834 - - - - 0.862 - - - phosphoenolpyruvate carboxykinase 2 (mitochondrial) [Source:ZFIN;Acc:ZDB-GENE-040426-2266]
75. pgam1a ENSDARG00000005423 3986 1.694 0.773 - - - - 0.921 - - - phosphoglycerate mutase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1827]
76. isca1 ENSDARG00000051956 5855 1.689 0.746 - - - - 0.943 - - - iron-sulfur cluster assembly 1 [Source:ZFIN;Acc:ZDB-GENE-050626-94]
77. atp6v1d ENSDARG00000011175 8331 1.689 0.898 - - - - 0.791 - - - ATPase H+ transporting V1 subunit D [Source:ZFIN;Acc:ZDB-GENE-040426-727]
78. TMEM254 ENSDARG00000109902 3377 1.683 0.750 - - - - 0.933 - - - transmembrane protein 254 [Source:ZFIN;Acc:ZDB-GENE-040426-1348]
79. ctsla ENSDARG00000007836 67814 1.679 0.765 - - - - 0.914 - - - cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
80. gskip ENSDARG00000038099 5059 1.677 - - 0.764 - - 0.913 - - - gsk3b interacting protein [Source:ZFIN;Acc:ZDB-GENE-040426-2777]
81. C3_1 C3_1 637 1.677 - - 0.817 - - 0.860 - - -
82. dlg3_1 ENSDARG00000076796, ENSDARG00000111101 1542 1.676 - - - - 0.871 0.805 - - - discs, large homolog 3 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-050208-93]
83. creb3l3 creb3l3 1981 1.675 0.794 - - - - 0.881 - - -
84. PCOLCE_1 PCOLCE_1 2148 1.675 0.801 - - - - 0.874 - - -
85. apoeb ENSDARG00000040295 229165 1.672 0.768 - - - - 0.904 - - - apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
86. ces2 ENSDARG00000041569, ENSDARG00000110630 5541 1.669 0.765 - - - - 0.904 - - - carboxylesterase 2 (intestine, liver) [Source:ZFIN;Acc:ZDB-GENE-061013-99]
87. ctsh ENSDARG00000041108 2873 1.668 0.871 - - - - 0.797 - - - cathepsin H [Source:ZFIN;Acc:ZDB-GENE-030131-3539]
88. mdh1a mdh1a 11035 1.668 - - - - 0.835 - - 0.833 -
89. gpd1b ENSDARG00000043180 6002 1.667 - - 0.793 - - 0.874 - - - glycerol-3-phosphate dehydrogenase 1b [Source:ZFIN;Acc:ZDB-GENE-030131-3906]
90. nckap1 ENSDARG00000060853 3540 1.666 - - - - 0.832 0.834 - - - NCK-associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4426]
91. gnpda2 ENSDARG00000024443 6637 1.664 0.748 - - - - 0.916 - - - glucosamine-6-phosphate deaminase 2 [Source:ZFIN;Acc:ZDB-GENE-091117-41]
92. CD68 CD68 4599 1.66 0.737 - - - - 0.923 - - -
93. apoa1a ENSDARG00000012076, ENSDARG00000110395 163437 1.659 - - 0.812 - - 0.847 - - - apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
94. gnpda1 ENSDARG00000037307, ENSDARG00000109317, ENSDARG00000114846 2191 1.658 - - 0.740 - - 0.918 - - - glucosamine-6-phosphate deaminase 1 [Source:ZFIN;Acc:ZDB-GENE-050417-417]
95. fga ENSDARG00000020741 5580 1.658 - - 0.709 - - 0.949 - - - fibrinogen alpha chain [Source:ZFIN;Acc:ZDB-GENE-031010-21]
96. slc25a1b ENSDARG00000076381 6213 1.657 0.794 - - - - 0.863 - - - slc25a1 solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1b [Source:ZFIN;Acc:ZDB-GENE-130114-1]
97. CABZ01081490.1 ENSDARG00000111653 11892 1.653 - - - - 0.842 - - 0.811 -
98. SLC25A6 ENSDARG00000005853, ENSDARG00000113366 975 1.652 - - 0.810 - - 0.842 - - - solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 [Source:ZFIN;Acc:ZDB-GENE-070912-446]
99. cebpb ENSDARG00000042725 3921 1.648 0.715 - - - - - - 0.933 - CCAAT enhancer binding protein beta [Source:ZFIN;Acc:ZDB-GENE-020111-3]
100. CABZ01057488.1 ENSDARG00000110427 598 1.648 - - 0.746 - - 0.902 - - -

There are 1402 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA