Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for shhb

Gene Name Gene ID Reads Annotation
shhb ENSDARG00000038867 338 sonic hedgehog b [Source:ZFIN;Acc:ZDB-GENE-980526-41]










Genes with expression patterns similar to shhb

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. shhb ENSDARG00000038867 338 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 sonic hedgehog b [Source:ZFIN;Acc:ZDB-GENE-980526-41]
2. scg2a 800 2.376 - 0.701 - - - 0.820 0.855 - - secretogranin II (chromogranin C) a
3. spon1b ENSDARG00000023694, ENSDARG00000110889 586 2.349 0.739 - - - - 0.725 0.885 - - spondin 1b [Source:ZFIN;Acc:ZDB-GENE-000427-10]
4. nkx6.1 ENSDARG00000022569 3779 2.347 0.734 0.765 - - - - 0.848 - - NK6 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040718-178]
5. crb1 ENSDARG00000100506, ENSDARG00000110621 373 2.317 - 0.709 - - - 0.832 0.776 - - crumbs family member 1, photoreceptor morphogenesis associated [Source:ZFIN;Acc:ZDB-GENE-050208-382]
6. olig2 ENSDARG00000040946 1405 2.23 0.714 0.740 - - - - 0.776 - - oligodendrocyte lineage transcription factor 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4013]
7. neurod neurod 1189 1.877 - 0.947 - - - - 0.930 - -
8. cyr61l2 ENSDARG00000099985 725 1.87 - - - - - 0.899 0.971 - - cysteine-rich, angiogenic inducer, 61 like 2 [Source:ZFIN;Acc:ZDB-GENE-060404-5]
9. sp2 ENSDARG00000076763, ENSDARG00000113443, ENSDARG00000115477 20 1.845 - - - - - 0.884 0.961 - - sp2 transcription factor [Source:ZFIN;Acc:ZDB-GENE-080410-1]
10. UNC13A UNC13A 36 1.839 - - - - - 0.878 0.961 - -
11. spon1a ENSDARG00000010029 355 1.831 - - - - - 0.884 0.947 - - spondin 1a [Source:ZFIN;Acc:ZDB-GENE-000427-9]
12. ENSDARG00000091642 ENSDARG00000091642 14 1.828 - 0.944 - - - 0.884 - - -
13. rnft2 ENSDARG00000053019 270 1.826 - 0.925 - - - - 0.901 - - ring finger protein, transmembrane 2 [Source:ZFIN;Acc:ZDB-GENE-050522-168]
14. pkd2l1 ENSDARG00000022503 372 1.782 - 0.854 - - - - 0.928 - - polycystic kidney disease 2-like 1 [Source:ZFIN;Acc:ZDB-GENE-030616-558]
15. clu ENSDARG00000010434 498 1.763 - - - - - 0.869 0.894 - - clusterin [Source:ZFIN;Acc:ZDB-GENE-040426-1774]
16. wnt4b ENSDARG00000040159, ENSDARG00000115606 490 1.763 - - - - - 0.871 0.892 - - wingless-type MMTV integration site family, member 4b [Source:ZFIN;Acc:ZDB-GENE-000411-1]
17. gpr85 ENSDARG00000068701, ENSDARG00000116501 372 1.752 - 0.934 - - - - 0.818 - - G protein-coupled receptor 85 [Source:ZFIN;Acc:ZDB-GENE-000710-2]
18. atp2b3b ENSDARG00000023445 1424 1.725 - 0.954 - - - - 0.771 - - ATPase plasma membrane Ca2+ transporting 3b [Source:ZFIN;Acc:ZDB-GENE-080409-2]
19. si:ch211-240g9.1 36 1.711 - 0.944 - - - - 0.767 - - si:ch211-240g9.1
20. si:ch211-106n13.3 ENSDARG00000052633 3 1.711 - 0.944 - - - - 0.767 - - si:ch211-106n13.3 [Source:ZFIN;Acc:ZDB-GENE-030131-9088]
21. NPPC ENSDARG00000068126 45 1.704 0.721 - - - - - 0.983 - - natriuretic peptide C [Source:ZFIN;Acc:ZDB-GENE-070705-24]
22. ntn1b ENSDARG00000022531 248 1.701 - 0.772 - - - 0.929 - - - netrin 1b [Source:ZFIN;Acc:ZDB-GENE-990415-168]
23. tpgs2 ENSDARG00000011926 48 1.695 - - - - - 0.884 - - 0.811 tubulin polyglutamylase complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-040704-49]
24. gria2b ENSDARG00000052765 188 1.687 - 0.838 - - - - 0.849 - - glutamate receptor, ionotropic, AMPA 2b [Source:ZFIN;Acc:ZDB-GENE-020125-4]
25. TMEM100_1 TMEM100_1 44 1.685 - - - - - 0.909 0.776 - -
26. si:dkey-30j22.1 ENSDARG00000042829 25 1.678 0.718 0.960 - - - - - - - si:dkey-30j22.1 [Source:ZFIN;Acc:ZDB-GENE-041001-184]
27. pou3f2b ENSDARG00000076262, ENSDARG00000112713 2439 1.674 - 0.878 - - - - 0.796 - - POU class 3 homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-980526-370]
28. mpped2 ENSDARG00000034443, ENSDARG00000114674 527 1.673 - 0.794 - - - - 0.879 - - metallophosphoesterase domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-030131-8903]
29. wnt4a ENSDARG00000071208 1157 1.669 - - - - - 0.763 0.906 - - wingless-type MMTV integration site family, member 4a [Source:ZFIN;Acc:ZDB-GENE-980526-352]
30. C2CD4A ENSDARG00000061416 61 1.668 0.767 - - - - - 0.901 - - C2 calcium dependent domain containing 4A [Source:ZFIN;Acc:ZDB-GENE-030131-5712]
31. lmo3 ENSDARG00000008720, ENSDARG00000114518 4773 1.662 - 0.797 - - - - 0.865 - - LIM domain only 3 [Source:ZFIN;Acc:ZDB-GENE-050522-201]
32. SGSM1_1 SGSM1_1 40 1.656 - - - - - 0.882 0.774 - -
33. cdkl1 ENSDARG00000017329 3345 1.656 - - - - - 0.707 0.949 - - cyclin-dependent kinase-like 1 (CDC2-related kinase) [Source:ZFIN;Acc:ZDB-GENE-040808-34]
34. ei24 ENSDARG00000053840 78 1.651 - - - - - 0.884 0.767 - - etoposide induced 2.4 [Source:ZFIN;Acc:ZDB-GENE-050417-457]
35. CAMSAP2 CAMSAP2 109 1.651 - - - - - 0.884 0.767 - -
36. zgc:110434 21 1.651 - - - - - 0.884 0.767 - - zgc:110434
37. EGR4_1 EGR4_1 14 1.651 - - - - - 0.884 0.767 - -
38. napgl napgl 39 1.646 0.762 - - - - 0.884 - - -
39. lgi1a ENSDARG00000020493 1218 1.644 - 0.801 - - - - 0.843 - - leucine-rich, glioma inactivated 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1731]
40. amigo3 ENSDARG00000074469 39 1.636 0.745 0.891 - - - - - - - adhesion molecule with Ig-like domain 3 [Source:ZFIN;Acc:ZDB-GENE-050208-449]
41. adam23a ENSDARG00000062323 580 1.636 - 0.890 - - - - 0.746 - - ADAM metallopeptidase domain 23a [Source:ZFIN;Acc:ZDB-GENE-070810-2]
42. rfx4 ENSDARG00000026395, ENSDARG00000116861 2047 1.633 - 0.744 - - - - 0.889 - - regulatory factor X, 4 [Source:ZFIN;Acc:ZDB-GENE-040909-2]
43. shha ENSDARG00000068567, ENSDARG00000111447 1497 1.625 - - - - - 0.833 0.792 - - sonic hedgehog a [Source:ZFIN;Acc:ZDB-GENE-980526-166]
44. atp1b4 ENSDARG00000053262 1337 1.616 - 0.747 - - - - 0.869 - - ATPase Na+/K+ transporting subunit beta 4 [Source:ZFIN;Acc:ZDB-GENE-070412-1]
45. ADAMTS3 ENSDARG00000060127 2839 1.613 - 0.807 - - - - 0.806 - - ADAM metallopeptidase with thrombospondin type 1 motif, 3 [Source:ZFIN;Acc:ZDB-GENE-110223-1]
46. syt11a ENSDARG00000057913 1145 1.593 - 0.887 - - - - 0.706 - - synaptotagmin XIa [Source:ZFIN;Acc:ZDB-GENE-040426-2815]
47. nmnat2 ENSDARG00000004580 370 1.588 - 0.779 - - - - 0.809 - - nicotinamide nucleotide adenylyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8201]
48. ak8 ENSDARG00000030961, ENSDARG00000113361, ENSDARG00000116619 50 1.577 - - - - - - 0.848 - 0.729 adenylate kinase 8 [Source:ZFIN;Acc:ZDB-GENE-050522-275]
49. ctgfa ENSDARG00000042934, ENSDARG00000112741 2123 1.576 - - - - - 0.842 0.734 - - connective tissue growth factor a [Source:ZFIN;Acc:ZDB-GENE-030131-102]
50. sox2 ENSDARG00000070913 2763 1.574 - 0.784 - - - - 0.790 - - SRY (sex determining region Y)-box 2 [Source:ZFIN;Acc:ZDB-GENE-030909-1]
51. neurod4 ENSDARG00000003469, ENSDARG00000117149 1732 1.572 - 0.839 - - - - 0.733 - - neuronal differentiation 4 [Source:ZFIN;Acc:ZDB-GENE-030730-1]
52. npr3 ENSDARG00000035253, ENSDARG00000109797, ENSDARG00000110534 857 1.564 - 0.729 - - - - 0.835 - - natriuretic peptide receptor 3 [Source:ZFIN;Acc:ZDB-GENE-060531-91]
53. CU658147.1 CU658147.1 69 1.562 - - - - - 0.845 0.717 - -
54. nova2 ENSDARG00000017673 7685 1.561 - 0.825 - - - - 0.736 - - neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
55. cd44a ENSDARG00000087863 4 1.561 0.794 - - - - - 0.767 - - CD44 molecule (Indian blood group) a [Source:ZFIN;Acc:ZDB-GENE-110429-1]
56. ptprnb ENSDARG00000077047 2743 1.561 - 0.811 - - - - 0.750 - - protein tyrosine phosphatase, receptor type, Nb [Source:ZFIN;Acc:ZDB-GENE-100505-1]
57. st8sia3 ENSDARG00000045301 3 1.561 0.794 - - - - - 0.767 - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 [Source:ZFIN;Acc:ZDB-GENE-060228-4]
58. ift81 ENSDARG00000007444 97 1.56 - 0.838 - - - - 0.722 - - intraflagellar transport 81 homolog [Source:ZFIN;Acc:ZDB-GENE-040714-3]
59. rheb ENSDARG00000090213 1432 1.548 - 0.700 - - - - 0.848 - - Ras homolog, mTORC1 binding [Source:ZFIN;Acc:ZDB-GENE-040426-1690]
60. zic1 ENSDARG00000015567 2520 1.548 - 0.705 - - - - 0.843 - - zic family member 1 (odd-paired homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-000208-4]
61. sst1.1 ENSDARG00000040799 677 1.547 0.781 - - - - - 0.766 - - somatostatin 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4743]
62. slc12a5b ENSDARG00000078187 329 1.539 0.781 - - - - - 0.758 - - solute carrier family 12 (potassium/chloride transporter), member 5b [Source:ZFIN;Acc:ZDB-GENE-080707-1]
63. pex10 ENSDARG00000041511 52 1.536 - - - - - - 0.832 - 0.704 peroxisomal biogenesis factor 10 [Source:ZFIN;Acc:ZDB-GENE-041010-71]
64. INSM2 ENSDARG00000020655 122 1.534 0.758 - - - - - 0.776 - - INSM transcriptional repressor 2 [Source:HGNC Symbol;Acc:HGNC:17539]
65. CU302376.1 CU302376.1 141 1.514 - - - - - 0.780 0.734 - -
66. urp2 ENSDARG00000067781 85 1.507 - 0.736 - - - - 0.771 - - urotensin II-related peptide [Source:ZFIN;Acc:ZDB-GENE-110718-3]
67. BX511121.1 ENSDARG00000029997 1774 1.501 0.706 - - - - - 0.795 - -
68. nkx2.9 ENSDARG00000020332 357 1.5 - - - - - 0.710 0.790 - - NK2 transcription factor related, locus 9 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-4340]
69. nes ENSDARG00000088805 2710 1.499 - 0.753 - - - - 0.746 - - nestin [Source:ZFIN;Acc:ZDB-GENE-071119-2]
70. st18 663 1.498 - 0.774 - - - - 0.724 - - suppression of tumorigenicity 18, zinc finger
71. zgc:114130 ENSDARG00000040725, ENSDARG00000116854 806 1.491 - 0.771 - - - - - 0.720 - zgc:114130 [Source:ZFIN;Acc:ZDB-GENE-050913-48]
72. nptx1l ENSDARG00000074671 569 1.487 - 0.774 - - - - 0.713 - - neuronal pentraxin 1 like [Source:ZFIN;Acc:ZDB-GENE-040426-2418]
73. gad1b ENSDARG00000027419 440 1.479 - - - - - 0.732 0.747 - - glutamate decarboxylase 1b [Source:ZFIN;Acc:ZDB-GENE-030909-3]
74. ek1 ENSDARG00000020080 742 1.471 0.707 - - - - - 0.764 - - eph-like kinase 1 [Source:ZFIN;Acc:ZDB-GENE-990415-58]
75. MCTP1 MCTP1 219 1.465 - 0.717 - - - - 0.748 - -
76. pou3f2a ENSDARG00000070220 817 1.454 0.709 - - - - - 0.745 - - POU class 3 homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-980526-139]
77. ascl1a ENSDARG00000038386 1290 1.453 - 0.731 - - - - 0.722 - - achaete-scute family bHLH transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-980526-90]
78. CU928222.1 ENSDARG00000097436 1662 1.449 - 0.729 - - - - 0.720 - -
79. tnika ENSDARG00000056218 728 1.446 - 0.709 - - - - 0.737 - - TRAF2 and NCK interacting kinase a [Source:ZFIN;Acc:ZDB-GENE-030131-3767]
80. CABZ01029738.1 CABZ01029738.1 327 1.437 - 0.711 - - - - 0.726 - -
81. heyl ENSDARG00000055798, ENSDARG00000112770 76 0.983 - - - - - - 0.983 - - hes-related family bHLH transcription factor with YRPW motif-like [Source:ZFIN;Acc:ZDB-GENE-030131-7074]
82. tagln3a ENSDARG00000079805 123 0.983 - - - - - - 0.983 - - transgelin 3a [Source:ZFIN;Acc:ZDB-GENE-060531-53]
83. si:ch211-271g18.2 si:ch211-271g18.2 34 0.983 - - - - - - 0.983 - -
84. adora1 adora1 149 0.983 - - - - - - 0.983 - -
85. arhgef11 ENSDARG00000052482 24 0.978 - 0.978 - - - - - - - Rho guanine nucleotide exchange factor (GEF) 11 [Source:ZFIN;Acc:ZDB-GENE-070604-1]
86. TUBB8P7 TUBB8P7 1353 0.974 - 0.974 - - - - - - -
87. sarm1 ENSDARG00000010610 387 0.968 - 0.968 - - - - - - - sterile alpha and TIR motif containing 1 [Source:ZFIN;Acc:ZDB-GENE-040219-1]
88. si:ch211-202e12.3 401 0.964 - - - - - - 0.964 - - si:ch211-202e12.3, transcript variant X6
89. si:dkey-29j8.5 si:dkey-29j8.5 9 0.961 - - - - - - 0.961 - -
90. nek8 ENSDARG00000045626, ENSDARG00000117017 67 0.961 - - - - - - 0.961 - - NIMA-related kinase 8 [Source:ZFIN;Acc:ZDB-GENE-020509-1]
91. socs7_2 ENSDARG00000077018, ENSDARG00000114903, ENSDARG00000115097 66 0.961 - - - - - - 0.961 - - suppressor of cytokine signaling 7 [Source:ZFIN;Acc:ZDB-GENE-080204-125]
92. nfasca ENSDARG00000061099, ENSDARG00000109524 275 0.961 - - - - - - 0.961 - - neurofascin homolog (chicken) a [Source:ZFIN;Acc:ZDB-GENE-080229-6]
93. BX469915.2 BX469915.2 48 0.961 - - - - - - 0.961 - -
94. GJC1 GJC1 44 0.961 - - - - - - 0.961 - -
95. slain1a ENSDARG00000019185, ENSDARG00000109350, ENSDARG00000112333, ENSDARG00000116098 135 0.961 - - - - - - 0.961 - - SLAIN motif family, member 1a [Source:ZFIN;Acc:ZDB-GENE-030131-7751]
96. slc32a1 ENSDARG00000059775 1092 0.961 - 0.961 - - - - - - - solute carrier family 32 (GABA vesicular transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-061201-1]
97. ela2l ENSDARG00000056765, ENSDARG00000114256 31 0.961 - - - - - - 0.961 - - elastase 2 like [Source:ZFIN;Acc:ZDB-GENE-040511-1]
98. chst2b ENSDARG00000058585 33 0.961 - - - - - - 0.961 - - carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2b [Source:ZFIN;Acc:ZDB-GENE-060720-33]
99. gfra3 ENSDARG00000087704 122 0.961 - - - - - - 0.961 - - GDNF family receptor alpha 3 [Source:ZFIN;Acc:ZDB-GENE-110512-1]
100. crfb2 ENSDARG00000040332, ENSDARG00000109306, ENSDARG00000116866 21 0.961 - - - - - - 0.961 - - cytokine receptor family member b2 [Source:ZFIN;Acc:ZDB-GENE-070905-2]

There are 1183 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA