Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for shha

Gene Name Gene ID Reads Annotation
shha ENSDARG00000068567, ENSDARG00000111447 1497 sonic hedgehog a [Source:ZFIN;Acc:ZDB-GENE-980526-166]










Genes with expression patterns similar to shha

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. shha ENSDARG00000068567, ENSDARG00000111447 1497 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 sonic hedgehog a [Source:ZFIN;Acc:ZDB-GENE-980526-166]
2. chad ENSDARG00000045071 903 3.372 0.872 0.808 - - - 0.911 0.781 - - chondroadherin [Source:ZFIN;Acc:ZDB-GENE-040426-1130]
3. ntla ntla 926 3.325 0.891 0.793 - - - 0.927 0.714 - -
4. ctgfa ENSDARG00000042934, ENSDARG00000112741 2123 3.296 0.757 0.701 - - - 0.885 0.953 - - connective tissue growth factor a [Source:ZFIN;Acc:ZDB-GENE-030131-102]
5. clu ENSDARG00000010434 498 3.294 0.702 0.906 - - - 0.913 0.773 - - clusterin [Source:ZFIN;Acc:ZDB-GENE-040426-1774]
6. epyc ENSDARG00000056950 7783 3.288 0.851 0.729 - - - 0.977 0.731 - - epiphycan [Source:ZFIN;Acc:ZDB-GENE-041008-9]
7. plod2 ENSDARG00000011821 1656 3.208 0.807 0.711 - - - 0.947 0.743 - - procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 [Source:ZFIN;Acc:ZDB-GENE-070326-1]
8. col9a3 ENSDARG00000037845 6564 3.129 0.750 0.751 - - - 0.892 0.736 - - collagen, type IX, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9799]
9. wnt4b ENSDARG00000040159, ENSDARG00000115606 490 3.069 0.715 0.724 - - - 0.781 0.849 - - wingless-type MMTV integration site family, member 4b [Source:ZFIN;Acc:ZDB-GENE-000411-1]
10. tgfb3 ENSDARG00000019367 2327 2.657 0.860 - - - - 0.931 0.866 - - transforming growth factor, beta 3 [Source:ZFIN;Acc:ZDB-GENE-030723-4]
11. PLXDC2 ENSDARG00000059950 220 2.59 0.798 0.868 - - - 0.924 - - - plexin domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-140106-69]
12. CABZ01044297.1 CABZ01044297.1 2015 2.538 0.893 - - - - 0.937 0.708 - -
13. BX323459.1 ENSDARG00000109508 1476 2.461 0.834 - - - - 0.746 0.881 - -
14. cyr61l2 ENSDARG00000099985 725 2.459 - 0.725 - - - 0.841 0.893 - - cysteine-rich, angiogenic inducer, 61 like 2 [Source:ZFIN;Acc:ZDB-GENE-060404-5]
15. PAQR4 PAQR4 2150 2.432 0.792 - - - - 0.875 0.765 - -
16. CABZ01079764.1 CABZ01079764.1 12103 2.397 0.754 0.768 - - - 0.875 - - -
17. pi15a ENSDARG00000045378 2361 2.397 0.797 - - - - 0.833 0.767 - - peptidase inhibitor 15a [Source:ZFIN;Acc:ZDB-GENE-040724-135]
18. si:dkeyp-118a3.2 ENSDARG00000086957 2106 2.392 0.817 - - - - 0.814 0.761 - - si:dkeyp-118a3.2 [Source:ZFIN;Acc:ZDB-GENE-060810-149]
19. fam46bb 601 2.376 - 0.842 - - - 0.816 0.718 - - family with sequence similarity 46, member Bb
20. tgfbi ENSDARG00000071586 17779 2.367 0.740 - - - - 0.883 0.744 - - transforming growth factor, beta-induced [Source:ZFIN;Acc:ZDB-GENE-030131-73]
21. myhc4 ENSDARG00000035438 1322 2.36 - 0.802 - - - 0.751 0.807 - - myosin heavy chain 4 [Source:ZFIN;Acc:ZDB-GENE-030131-6206]
22. ntd5 ENSDARG00000040944 4988 2.352 0.801 - - - - 0.840 0.711 - - ntl-dependent gene 5 [Source:ZFIN;Acc:ZDB-GENE-031030-7]
23. BX842614.2 BX842614.2 799 2.334 0.748 - - - - 0.848 0.738 - -
24. mxra8a ENSDARG00000062222 530 2.305 0.796 0.759 - - - 0.750 - - - matrix-remodelling associated 8a [Source:ZFIN;Acc:ZDB-GENE-060503-671]
25. SMOC1 ENSDARG00000088255 507 2.285 0.860 0.709 - - - - 0.716 - - SPARC related modular calcium binding 1 [Source:ZFIN;Acc:ZDB-GENE-110310-7]
26. scg2a 800 2.274 - 0.837 - - - 0.709 0.728 - - secretogranin II (chromogranin C) a
27. sncga ENSDARG00000034423, ENSDARG00000112260 5469 2.263 - 0.761 - - - 0.796 0.706 - - synuclein, gamma a [Source:ZFIN;Acc:ZDB-GENE-050417-18]
28. ryr3 ENSDARG00000071331 6795 2.258 - 0.720 - - - 0.810 0.728 - - ryanodine receptor 3 [Source:ZFIN;Acc:ZDB-GENE-041001-165]
29. si:ch211-32p8.1 si:ch211-32p8.1 3402 2.211 0.765 0.746 - - - 0.700 - - -
30. col11a2 ENSDARG00000012422 3204 2.192 0.733 0.715 - - - - 0.744 - - collagen, type XI, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-000208-23]
31. smpx ENSDARG00000045302 2175 2.19 0.739 - - - - 0.701 0.750 - - small muscle protein X-linked [Source:ZFIN;Acc:ZDB-GENE-040704-24]
32. hspb11 ENSDARG00000002204 879 2.188 0.701 0.748 - - - - 0.739 - - heat shock protein, alpha-crystallin-related, b11 [Source:ZFIN;Acc:ZDB-GENE-030131-5148]
33. zgc:113232 ENSDARG00000040118, ENSDARG00000116977 5865 1.819 0.888 - - - - 0.931 - - - zgc:113232 [Source:ZFIN;Acc:ZDB-GENE-050327-86]
34. sox9a ENSDARG00000003293 812 1.813 - - - - - 0.936 0.877 - - SRY (sex determining region Y)-box 9a [Source:ZFIN;Acc:ZDB-GENE-001103-1]
35. susd5 ENSDARG00000088277 439 1.749 0.870 - - - - 0.879 - - - sushi domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-120215-196]
36. si:dkeyp-12a9.5 3058 1.746 0.795 - - - - 0.951 - - - si:dkeyp-12a9.5
37. col2a1a ENSDARG00000069093, ENSDARG00000111202 50276 1.731 0.807 - - - - 0.924 - - - collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
38. tppp3 ENSDARG00000030463 992 1.731 - - - - - 0.873 0.858 - - tubulin polymerization-promoting protein family member 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1909]
39. COBLL1_1 COBLL1_1 787 1.705 0.822 - - - - 0.883 - - -
40. mmp23bb ENSDARG00000009825 133 1.697 - - - - - 0.949 0.748 - - matrix metallopeptidase 23bb [Source:ZFIN;Acc:ZDB-GENE-050417-448]
41. cthrc1a ENSDARG00000087198 1001 1.694 - - - - - 0.839 0.855 - - collagen triple helix repeat containing 1a [Source:ZFIN;Acc:ZDB-GENE-040808-22]
42. CU469518.1 CU469518.1 214 1.681 0.868 - - - - 0.813 - - -
43. plcl1 ENSDARG00000067676 2457 1.68 - - - - - 0.859 0.821 - - phospholipase C like 1 [Source:ZFIN;Acc:ZDB-GENE-090313-194]
44. nkx2.2a ENSDARG00000053298 747 1.677 - 0.827 - - - - 0.850 - - NK2 homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-980526-403]
45. ntn1b ENSDARG00000022531 248 1.674 - 0.798 - - - 0.876 - - - netrin 1b [Source:ZFIN;Acc:ZDB-GENE-990415-168]
46. col9a2 ENSDARG00000024492 20234 1.671 0.859 - - - - 0.812 - - - procollagen, type IX, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9786]
47. zgc:86725 2559 1.666 0.925 - - - - 0.741 - - - zgc:86725
48. zgc:92880 zgc:92880 56 1.662 - 0.854 - - - 0.808 - - -
49. spon1b ENSDARG00000023694, ENSDARG00000110889 586 1.656 - - - - - 0.747 0.909 - - spondin 1b [Source:ZFIN;Acc:ZDB-GENE-000427-10]
50. nkx3.2 ENSDARG00000037639 575 1.647 - - - - - 0.715 0.932 - - NK3 homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-030127-1]
51. olfml2ba ENSDARG00000005716 195 1.645 - 0.827 - - - - 0.818 - - olfactomedin-like 2Ba [Source:ZFIN;Acc:ZDB-GENE-041014-329]
52. spon1a ENSDARG00000010029 355 1.641 - - - - - 0.761 0.880 - - spondin 1a [Source:ZFIN;Acc:ZDB-GENE-000427-9]
53. col27a1a 1747 1.635 - - - - - 0.916 0.719 - - collagen, type XXVII, alpha 1a
54. cmn ENSDARG00000055527 14039 1.63 0.856 - - - - 0.774 - - - calymmin [Source:ZFIN;Acc:ZDB-GENE-000208-9]
55. spon2a ENSDARG00000025465, ENSDARG00000115300 294 1.627 - 0.848 - - - - 0.779 - - spondin 2a, extracellular matrix protein [Source:ZFIN;Acc:ZDB-GENE-990415-160]
56. acana ENSDARG00000035891 118 1.626 - - - - - 0.921 0.705 - - aggrecan a [Source:ZFIN;Acc:ZDB-GENE-050208-221]
57. shhb ENSDARG00000038867 338 1.625 - - - - - 0.833 0.792 - - sonic hedgehog b [Source:ZFIN;Acc:ZDB-GENE-980526-41]
58. alpk3a ENSDARG00000078989 1992 1.616 - 0.748 - - - 0.868 - - - alpha-kinase 3a [Source:ZFIN;Acc:ZDB-GENE-050419-48]
59. epha3l epha3l 1441 1.616 - 0.884 - - - - 0.732 - -
60. cyr61l1 ENSDARG00000035422, ENSDARG00000112039, ENSDARG00000114683 332 1.612 0.821 - - - - 0.791 - - - cysteine-rich, angiogenic inducer 61 like 1 [Source:ZFIN;Acc:ZDB-GENE-050417-136]
61. urp1 ENSDARG00000093493, ENSDARG00000109394, ENSDARG00000114654 637 1.605 - 0.817 - - - - 0.788 - - urotensin-related peptide 1 [Source:ZFIN;Acc:ZDB-GENE-100922-138]
62. tnw 16679 1.604 - 0.826 - - - - 0.778 - - tenascin W, transcript variant X2
63. cacnb1 ENSDARG00000002167 1402 1.6 - 0.830 - - - - 0.770 - - calcium channel, voltage-dependent, beta 1 subunit [Source:ZFIN;Acc:ZDB-GENE-040718-399]
64. hhip ENSDARG00000060397, ENSDARG00000111482, ENSDARG00000111668 3025 1.6 - - - - - 0.749 0.851 - - hedgehog interacting protein [Source:ZFIN;Acc:ZDB-GENE-030131-4827]
65. col11a1a ENSDARG00000026165, ENSDARG00000115341 43138 1.59 0.878 - - - - 0.712 - - - collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
66. plxnb1a ENSDARG00000075821 1702 1.59 - - - - - 0.750 0.840 - - plexin b1a [Source:ZFIN;Acc:ZDB-GENE-050302-63]
67. C12H10orf71 C12H10orf71 595 1.584 - 0.749 - - - 0.835 - - -
68. si:dkey-6n6.1 ENSDARG00000062487 222 1.573 0.704 - - - - 0.869 - - - si:dkey-6n6.1 [Source:ZFIN;Acc:ZDB-GENE-060503-80]
69. BX470254.1 ENSDARG00000097402 1389 1.573 - 0.770 - - - 0.803 - - -
70. CR792456.1 CR792456.1 783 1.572 - - - - - 0.782 0.790 - -
71. loxl5b ENSDARG00000076904 468 1.572 - 0.787 - - - 0.785 - - - lysyl oxidase-like 5b [Source:ZFIN;Acc:ZDB-GENE-070818-3]
72. CR847510.1 CR847510.1 629 1.568 - - - - - 0.789 0.779 - -
73. si:ch211-152c2.3 ENSDARG00000045898 3448 1.567 - - - - - 0.754 0.813 - - si:ch211-152c2.3 [Source:ZFIN;Acc:ZDB-GENE-030131-9914]
74. MUSTN1 MUSTN1 1882 1.561 0.723 0.838 - - - - - - -
75. pth1a ENSDARG00000093738 106 1.56 0.733 0.827 - - - - - - - parathyroid hormone 1a [Source:ZFIN;Acc:ZDB-GENE-040623-1]
76. slc2a11b ENSDARG00000063288, ENSDARG00000113273 2478 1.556 - 0.773 - - - - 0.783 - - solute carrier family 2 (facilitated glucose transporter), member 11b [Source:ZFIN;Acc:ZDB-GENE-070705-96]
77. nkx6.1 ENSDARG00000022569 3779 1.554 - 0.838 - - - - 0.716 - - NK6 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040718-178]
78. FRMD5 ENSDARG00000075942 569 1.553 - - - - - 0.707 0.846 - - FERM domain containing 5 [Source:HGNC Symbol;Acc:HGNC:28214]
79. zgc:194470 zgc:194470 210 1.55 0.741 - - - - 0.809 - - -
80. notum2 ENSDARG00000088411 823 1.549 - 0.825 - - - 0.724 - - - notum pectinacetylesterase 2 [Source:ZFIN;Acc:ZDB-GENE-120215-77]
81. CU302436.1 ENSDARG00000114500 1619 1.548 - 0.843 - - - - 0.705 - - si:dkey-108k21.25 [Source:NCBI gene;Acc:103909883]
82. col9a1 col9a1 34481 1.546 0.705 - - - - 0.841 - - -
83. asb14 asb14 249 1.543 - 0.733 - - - - 0.810 - -
84. crip2 ENSDARG00000070670 4844 1.542 - - - - - 0.746 0.796 - - cysteine-rich protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2889]
85. C13H10orf71 3489 1.541 - 0.794 - - - - 0.747 - - chromosome 13 C10orf71 homolog
86. cyp4t8 ENSDARG00000004964, ENSDARG00000116412 1111 1.54 0.805 0.735 - - - - - - - cytochrome P450, family 4, subfamily T, polypeptide 8 [Source:ZFIN;Acc:ZDB-GENE-031219-3]
87. COLGALT2 ENSDARG00000014670 63 1.539 - - - - - 0.785 0.754 - - collagen beta(1-O)galactosyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-070222-1]
88. palm1a ENSDARG00000026882, ENSDARG00000115356 3425 1.536 - 0.822 - - - - 0.714 - - paralemmin 1a [Source:ZFIN;Acc:ZDB-GENE-050417-409]
89. ptrfa ptrfa 4363 1.536 0.746 0.790 - - - - - - -
90. CR450814.3 CR450814.3 608 1.524 - - - - - 0.819 0.705 - -
91. ntn1a ENSDARG00000105112, ENSDARG00000111684 2553 1.522 0.751 - - - - - 0.771 - - netrin 1a [Source:ZFIN;Acc:ZDB-GENE-990415-169]
92. ltbp3 325 1.517 - 0.816 - - - - 0.701 - - latent transforming growth factor beta binding protein 3, transcript variant X3
93. si:dkey-14o18.1 si:dkey-14o18.1 108 1.515 - - - - 0.790 0.725 - - -
94. txnipb ENSDARG00000070000 2365 1.513 - 0.761 - - - - 0.752 - - thioredoxin interacting protein b [Source:ZFIN;Acc:ZDB-GENE-040917-1]
95. tmem47 ENSDARG00000057322 4691 1.512 - 0.740 - - - - 0.772 - - transmembrane protein 47 [Source:ZFIN;Acc:ZDB-GENE-040426-2644]
96. filip1b ENSDARG00000079634 453 1.509 - 0.803 - - - - 0.706 - - filamin A interacting protein 1b [Source:ZFIN;Acc:ZDB-GENE-030131-1935]
97. pdgfrl ENSDARG00000006456, ENSDARG00000116983 1020 1.509 0.743 - - - - - 0.766 - - platelet-derived growth factor receptor-like [Source:ZFIN;Acc:ZDB-GENE-040426-901]
98. ehbp1l1b ENSDARG00000079895 559 1.508 0.719 0.789 - - - - - - - EH domain binding protein 1-like 1b [Source:ZFIN;Acc:ZDB-GENE-091204-238]
99. wdr90 ENSDARG00000079241 1163 1.507 - 0.757 - - - - 0.750 - - WD repeat domain 90 [Source:ZFIN;Acc:ZDB-GENE-070424-67]
100. MYOT ENSDARG00000076312 1791 1.506 - - - - - 0.720 0.786 - - myotilin [Source:ZFIN;Acc:ZDB-GENE-110411-129]

There are 926 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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