Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for shdb

Gene Name Gene ID Reads Annotation
shdb ENSDARG00000062109, ENSDARG00000111006 323 Src homology 2 domain containing transforming protein D, b [Source:ZFIN;Acc:ZDB-GENE-030131-6059]










Genes with expression patterns similar to shdb

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. shdb ENSDARG00000062109, ENSDARG00000111006 323 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 Src homology 2 domain containing transforming protein D, b [Source:ZFIN;Acc:ZDB-GENE-030131-6059]
2. bub1 ENSDARG00000077029 634 1.865 0.996 - - - - - 0.869 - - BUB1 mitotic checkpoint serine/threonine kinase [Source:ZFIN;Acc:ZDB-GENE-081104-75]
3. MAP3K6 MAP3K6 181 1.81 0.960 0.850 - - - - - - -
4. rhogb ENSDARG00000004301 358 1.704 0.994 - - - - - 0.710 - - ras homolog family member Gb [Source:ZFIN;Acc:ZDB-GENE-030131-8877]
5. si:dkey-28b4.8 ENSDARG00000002840 1277 1.701 0.939 - - - - 0.762 - - - si:dkey-28b4.8 [Source:ZFIN;Acc:ZDB-GENE-090501-2]
6. CBFA2T3 ENSDARG00000079012 6799 1.689 0.953 - - - - 0.736 - - - core-binding factor, runt domain, alpha subunit 2; translocated to, 3 [Source:ZFIN;Acc:ZDB-GENE-070209-2]
7. rabl6 rabl6 489 1.655 0.947 - - - - 0.708 - - -
8. C18H15orf59 C18H15orf59 80 1.647 - 0.767 - - - 0.880 - - -
9. si:ch211-14c7.2 ENSDARG00000094522 369 1.631 - 0.883 - - - 0.748 - - - si:ch211-14c7.2 [Source:ZFIN;Acc:ZDB-GENE-060503-856]
10. ZBTB26 ENSDARG00000028949 129 1.63 - 0.832 - - - 0.798 - - - zinc finger and BTB domain containing 26 [Source:HGNC Symbol;Acc:HGNC:23383]
11. CABZ01030107.1 ENSDARG00000058631 52 1.624 - 0.767 - - - 0.857 - - -
12. si:ch211-152f6.6 si:ch211-152f6.6 278 1.615 - 0.781 - - - 0.834 - - -
13. syngr3a ENSDARG00000014871 405 1.613 - 0.806 - - - 0.807 - - - synaptogyrin 3a [Source:ZFIN;Acc:ZDB-GENE-050522-541]
14. phf6 ENSDARG00000004046, ENSDARG00000115639 925 1.598 - - - - - 0.715 0.883 - - PHD finger protein 6 [Source:ZFIN;Acc:ZDB-GENE-030131-5278]
15. zbtb20 ENSDARG00000005586 195 1.596 - 0.767 - - - 0.829 - - - zinc finger and BTB domain containing 20 [Source:ZFIN;Acc:ZDB-GENE-070112-1992]
16. pou3f2b ENSDARG00000076262, ENSDARG00000112713 2439 1.593 - 0.840 - - - 0.753 - - - POU class 3 homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-980526-370]
17. her4.2 ENSDARG00000056729, ENSDARG00000094426 289 1.586 - 0.801 - - - 0.785 - - - hairy-related 4, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060815-1]
18. slc8a2b ENSDARG00000100592 598 1.584 - 0.785 - - - 0.799 - - - solute carrier family 8 (sodium/calcium exchanger), member 2b [Source:ZFIN;Acc:ZDB-GENE-050419-209]
19. gria4b ENSDARG00000059368, ENSDARG00000114212, ENSDARG00000115594 255 1.581 - 0.767 - - - 0.814 - - - glutamate receptor, ionotropic, AMPA 4b [Source:ZFIN;Acc:ZDB-GENE-030131-8013]
20. TMEM74 26 1.581 - 0.767 - - - 0.814 - - - transmembrane protein 74, transcript variant X3
21. cdh4 ENSDARG00000015002, ENSDARG00000110803, ENSDARG00000110870 97 1.573 - - 0.718 - - 0.855 - - - cadherin 4, type 1, R-cadherin (retinal) [Source:ZFIN;Acc:ZDB-GENE-991207-1]
22. gng3 ENSDARG00000009553 2530 1.564 - 0.795 - - - 0.769 - - - guanine nucleotide binding protein (G protein), gamma 3 [Source:ZFIN;Acc:ZDB-GENE-010705-1]
23. prdm14 ENSDARG00000045371 106 1.564 - 0.767 - - - 0.797 - - - PR domain containing 14 [Source:ZFIN;Acc:ZDB-GENE-030131-2709]
24. NPAS3 ENSDARG00000109820 362 1.561 - 0.767 - - - 0.794 - - - neuronal PAS domain protein 3 [Source:HGNC Symbol;Acc:HGNC:19311]
25. st8sia1_1 ENSDARG00000098221 16 1.558 - 0.767 - - - 0.791 - - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-051005-1]
26. lingo1b ENSDARG00000035899 86 1.558 - 0.767 - - - 0.791 - - - leucine rich repeat and Ig domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-040912-136]
27. PPP1R9B PPP1R9B 855 1.557 - 0.796 - - - 0.761 - - -
28. TSPEAR TSPEAR 9 1.545 - - 0.771 - - 0.774 - - -
29. lgi1a ENSDARG00000020493 1218 1.543 - 0.702 - - - 0.841 - - - leucine-rich, glioma inactivated 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1731]
30. mfsd4a mfsd4a 179 1.541 - 0.767 - - - 0.774 - - -
31. DKK3 DKK3 12 1.541 - 0.767 - - - 0.774 - - -
32. hoxc9a ENSDARG00000092809 18 1.541 - 0.767 - - - 0.774 - - - homeobox C9a [Source:ZFIN;Acc:ZDB-GENE-000328-5]
33. gltpb ENSDARG00000077962 5 1.541 - 0.767 - - - 0.774 - - - glycolipid transfer protein b [Source:ZFIN;Acc:ZDB-GENE-091118-80]
34. rbfox3l rbfox3l 34 1.541 - 0.767 - - - 0.774 - - -
35. RIMS1 RIMS1 9 1.541 - 0.767 - - - 0.774 - - -
36. si:dkey-97l20.5 si:dkey-97l20.5 33 1.541 - 0.767 - - - 0.774 - - -
37. rab39b rab39b 449 1.52 - 0.725 - - - 0.795 - - -
38. uckl1a ENSDARG00000001686 21 1.519 - 0.767 - - - 0.752 - - - uridine-cytidine kinase 1-like 1a [Source:ZFIN;Acc:ZDB-GENE-040724-238]
39. vrtn ENSDARG00000061963, ENSDARG00000115943 42 1.507 - 0.767 0.740 - - - - - - vertebrae development associated [Source:ZFIN;Acc:ZDB-GENE-060929-700]
40. si:ch211-121j5.2 si:ch211-121j5.2 86 1.502 - - 0.728 - - 0.774 - - -
41. her4.3 ENSDARG00000070770 613 1.502 - 0.718 - - - 0.784 - - - hairy-related 4, tandem duplicate 3 [Source:ZFIN;Acc:ZDB-GENE-081030-7]
42. zgc:113210 ENSDARG00000002872 99 1.5 - 0.767 - - - 0.733 - - - zgc:113210 [Source:ZFIN;Acc:ZDB-GENE-050320-83]
43. tmem179 ENSDARG00000013292 343 1.497 - 0.781 - - - 0.716 - - - transmembrane protein 179 [Source:ZFIN;Acc:ZDB-GENE-040808-25]
44. rn7sk ENSDARG00000081270 149 1.492 - - 0.763 - - 0.729 - - - RNA, 7SK small nuclear [Source:ZFIN;Acc:ZDB-GENE-090323-1]
45. tspan3b ENSDARG00000053559, ENSDARG00000112641 118 1.491 - 0.767 - - - 0.724 - - - tetraspanin 3b [Source:ZFIN;Acc:ZDB-GENE-070424-42]
46. stx1b ENSDARG00000000503 2724 1.486 - 0.752 - - - 0.734 - - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
47. scn2b ENSDARG00000101713 796 1.48 - 0.738 - - - 0.742 - - - sodium channel, voltage-gated, type II, beta [Source:ZFIN;Acc:ZDB-GENE-070920-1]
48. syt11b ENSDARG00000056105 578 1.479 - 0.737 - - - 0.742 - - - synaptotagmin XIb [Source:ZFIN;Acc:ZDB-GENE-090601-7]
49. NPTXR NPTXR 241 1.46 - 0.708 - - - 0.752 - - -
50. TUBB8P7 TUBB8P7 1353 1.446 - 0.728 - - - 0.718 - - -
51. gpr85 ENSDARG00000068701, ENSDARG00000116501 372 1.44 - 0.708 - - - 0.732 - - - G protein-coupled receptor 85 [Source:ZFIN;Acc:ZDB-GENE-000710-2]
52. cntnap2b ENSDARG00000074558, ENSDARG00000109616, ENSDARG00000116850 559 1.435 - 0.728 - - - 0.707 - - - contactin associated protein like 2b [Source:NCBI gene;Acc:563345]
53. pou3f1 ENSDARG00000009823, ENSDARG00000112302 7037 1.411 - 0.702 - - - 0.709 - - - POU class 3 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-372]
54. psme1 ENSDARG00000002165, ENSDARG00000115834 72 0.999 0.999 - - - - - - - - proteasome activator subunit 1 [Source:ZFIN;Acc:ZDB-GENE-991110-17]
55. si:ch211-157l15.4 si:ch211-157l15.4 92 0.999 0.999 - - - - - - - -
56. trim25l ENSDARG00000020863 292 0.999 0.999 - - - - - - - - tripartite motif containing 25, like [Source:ZFIN;Acc:ZDB-GENE-040914-87]
57. si:dkeyp-99c4.4 si:dkeyp-99c4.4 31 0.999 0.999 - - - - - - - -
58. fam155a ENSDARG00000075858 91 0.999 0.999 - - - - - - - - family with sequence similarity 155, member A [Source:ZFIN;Acc:ZDB-GENE-090313-34]
59. si:ch211-270n8.3 87 0.999 0.999 - - - - - - - - si:ch211-270n8.3, transcript variant X2
60. PTPDC1 PTPDC1 30 0.999 0.999 - - - - - - - -
61. pycr1 pycr1 1258 0.999 0.999 - - - - - - - -
62. gdap1l1 ENSDARG00000028628 233 0.998 0.998 - - - - - - - - ganglioside induced differentiation associated protein 1-like 1 [Source:ZFIN;Acc:ZDB-GENE-080812-2]
63. ugt5b4 ENSDARG00000091916 130 0.998 0.998 - - - - - - - - UDP glucuronosyltransferase 5 family, polypeptide B4 [Source:ZFIN;Acc:ZDB-GENE-070112-2332]
64. arhgap19 ENSDARG00000083189 210 0.998 0.998 - - - - - - - - Rho GTPase activating protein 19 [Source:ZFIN;Acc:ZDB-GENE-100922-157]
65. ACOT12 ENSDARG00000054534 61 0.997 0.997 - - - - - - - - acyl-CoA thioesterase 12 [Source:HGNC Symbol;Acc:HGNC:24436]
66. actr5 ENSDARG00000098235 237 0.997 0.997 - - - - - - - - ARP5 actin related protein 5 homolog [Source:ZFIN;Acc:ZDB-GENE-040426-2877]
67. C2H7orf25 C2H7orf25 209 0.997 0.997 - - - - - - - -
68. znf703 ENSDARG00000035563, ENSDARG00000112912 2226 0.995 0.995 - - - - - - - - zinc finger protein 703 [Source:ZFIN;Acc:ZDB-GENE-010717-1]
69. lzic ENSDARG00000055899 638 0.995 0.995 - - - - - - - - leucine zipper and CTNNBIP1 domain containing [Source:ZFIN;Acc:ZDB-GENE-040718-342]
70. ing5a ENSDARG00000022413 268 0.994 0.994 - - - - - - - - inhibitor of growth family, member 5a [Source:ZFIN;Acc:ZDB-GENE-031016-1]
71. vps11 ENSDARG00000036338 421 0.994 0.994 - - - - - - - - vacuolar protein sorting 11 [Source:ZFIN;Acc:ZDB-GENE-050731-5]
72. cib1 ENSDARG00000103118 291 0.993 0.993 - - - - - - - - calcium and integrin binding 1 (calmyrin) [Source:ZFIN;Acc:ZDB-GENE-050417-170]
73. si:ch211-264e16.1 ENSDARG00000068947 1358 0.993 0.993 - - - - - - - - si:ch211-264e16.1 [Source:ZFIN;Acc:ZDB-GENE-060503-226]
74. ptpn21 ENSDARG00000062248 2010 0.993 0.993 - - - - - - - - protein tyrosine phosphatase, non-receptor type 21 [Source:ZFIN;Acc:ZDB-GENE-080102-4]
75. efnb2b ENSDARG00000074050 77 0.991 0.991 - - - - - - - - ephrin-B2b [Source:ZFIN;Acc:ZDB-GENE-010618-1]
76. CARKD 1398 0.99 0.990 - - - - - - - - carbohydrate kinase domain containing, transcript variant X7
77. wdr35 ENSDARG00000069269 492 0.99 0.990 - - - - - - - - WD repeat domain 35 [Source:ZFIN;Acc:ZDB-GENE-060810-148]
78. plk2b ENSDARG00000019130, ENSDARG00000111402 328 0.99 0.990 - - - - - - - - polo-like kinase 2b (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-070720-17]
79. si:ch211-254c8.2 233 0.99 0.990 - - - - - - - - si:ch211-254c8.2, transcript variant X4
80. swt1 ENSDARG00000094010 472 0.99 0.990 - - - - - - - - SWT1 RNA endoribonuclease homolog [Source:ZFIN;Acc:ZDB-GENE-041015-373]
81. BICD2 ENSDARG00000075571 401 0.989 0.989 - - - - - - - - bicaudal D homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-120717-1]
82. prss35 ENSDARG00000100691, ENSDARG00000109353 2333 0.989 0.989 - - - - - - - - protease, serine, 35 [Source:ZFIN;Acc:ZDB-GENE-040704-55]
83. prickle1a ENSDARG00000040649 700 0.989 0.989 - - - - - - - - prickle homolog 1a [Source:ZFIN;Acc:ZDB-GENE-030724-5]
84. bcl3 ENSDARG00000087832 69 0.988 0.988 - - - - - - - - B cell CLL/lymphoma 3 [Source:ZFIN;Acc:ZDB-GENE-061013-1]
85. si:ch1073-322p19.1 ENSDARG00000075173 204 0.988 0.988 - - - - - - - - si:ch1073-322p19.1 [Source:ZFIN;Acc:ZDB-GENE-091204-224]
86. kif1b ENSDARG00000037020 2124 0.988 0.988 - - - - - - - - kinesin family member 1B [Source:ZFIN;Acc:ZDB-GENE-030820-1]
87. bcl6a ENSDARG00000070864, ENSDARG00000111395, ENSDARG00000112502, ENSDARG00000116260 657 0.988 0.988 - - - - - - - - B-cell CLL/lymphoma 6a (zinc finger protein 51) [Source:ZFIN;Acc:ZDB-GENE-040426-1696]
88. zgc:92313 ENSDARG00000040513 790 0.987 0.987 - - - - - - - - zgc:92313 [Source:ZFIN;Acc:ZDB-GENE-040718-339]
89. EPS8L2 ENSDARG00000058108 484 0.987 0.987 - - - - - - - - EPS8 like 2 [Source:ZFIN;Acc:ZDB-GENE-131121-340]
90. osgn1 ENSDARG00000052279 5607 0.986 0.986 - - - - - - - - oxidative stress induced growth inhibitor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-864]
91. wdr74 ENSDARG00000061993, ENSDARG00000111467, ENSDARG00000115634 416 0.986 0.986 - - - - - - - - WD repeat domain 74 [Source:ZFIN;Acc:ZDB-GENE-060929-1138]
92. wnt10a ENSDARG00000017155 491 0.986 0.986 - - - - - - - - wingless-type MMTV integration site family, member 10a [Source:ZFIN;Acc:ZDB-GENE-990415-278]
93. rhov ENSDARG00000070434 808 0.985 0.985 - - - - - - - - ras homolog family member V [Source:ZFIN;Acc:ZDB-GENE-031002-10]
94. miox ENSDARG00000002764 588 0.985 0.985 - - - - - - - - myo-inositol oxygenase [Source:ZFIN;Acc:ZDB-GENE-050913-113]
95. brap ENSDARG00000008560 821 0.985 0.985 - - - - - - - - BRCA1 associated protein [Source:ZFIN;Acc:ZDB-GENE-040718-168]
96. ssfa2 340 0.985 0.985 - - - - - - - - sperm specific antigen 2, transcript variant X2
97. sox4a ENSDARG00000004588, ENSDARG00000096389 2213 0.984 0.984 - - - - - - - - SRY (sex determining region Y)-box 4a [Source:ZFIN;Acc:ZDB-GENE-030131-8290]
98. nfe2l1b ENSDARG00000076533, ENSDARG00000114820 1574 0.984 0.984 - - - - - - - - nuclear factor, erythroid 2-like 1b [Source:ZFIN;Acc:ZDB-GENE-120319-2]
99. dnajc27 ENSDARG00000070916 530 0.984 0.984 - - - - - - - - DnaJ (Hsp40) homolog, subfamily C, member 27 [Source:ZFIN;Acc:ZDB-GENE-081022-93]
100. cby1 ENSDARG00000077409, ENSDARG00000113018 772 0.984 0.984 - - - - - - - - chibby homolog 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-5074]

There are 1526 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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