Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for shank3b

Gene Name Gene ID Reads Annotation
shank3b ENSDARG00000063054 148 SH3 and multiple ankyrin repeat domains 3b [Source:ZFIN;Acc:ZDB-GENE-041210-74]










Genes with expression patterns similar to shank3b

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. shank3b ENSDARG00000063054 148 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SH3 and multiple ankyrin repeat domains 3b [Source:ZFIN;Acc:ZDB-GENE-041210-74]
2. LSM5 ENSDARG00000071573 371 2.348 - 0.735 - - - - 0.762 0.851 - LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:ZFIN;Acc:ZDB-GENE-070822-23]
3. BX511006.2 BX511006.2 29 1.792 - - 0.842 - - - - 0.950 -
4. fermt3b ENSDARG00000030938 17 1.78 0.815 - - - - 0.965 - - - fermitin family member 3b [Source:ZFIN;Acc:ZDB-GENE-040426-1366]
5. tek ENSDARG00000028663 167 1.775 0.868 - - - - 0.907 - - - TEK tyrosine kinase, endothelial [Source:ZFIN;Acc:ZDB-GENE-990415-56]
6. rpap3 ENSDARG00000087962 22 1.771 - - 0.806 - - 0.965 - - - RNA polymerase II associated protein 3 [Source:ZFIN;Acc:ZDB-GENE-040426-928]
7. ba1 69 1.754 - - - - - 0.800 - 0.954 - ba1 globin
8. psmd2 ENSDARG00000103190 141 1.73 - - - - - 0.800 - 0.930 - proteasome 26S subunit, non-ATPase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1480]
9. snx33 ENSDARG00000014954 45 1.722 0.757 - - - - 0.965 - - - sorting nexin 33 [Source:ZFIN;Acc:ZDB-GENE-041111-209]
10. BX005085.2 ENSDARG00000098122 196 1.716 - 0.726 - - - 0.990 - - -
11. kitb ENSDARG00000056133, ENSDARG00000113747 10 1.697 0.732 - - - - 0.965 - - - v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog b [Source:ZFIN;Acc:ZDB-GENE-050916-2]
12. macrod1 ENSDARG00000029609 66 1.697 - 0.732 - - - 0.965 - - - MACRO domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040912-100]
13. elac1 ENSDARG00000045095, ENSDARG00000117014 244 1.693 0.781 - - - - - - 0.912 - elaC ribonuclease Z 1 [Source:ZFIN;Acc:ZDB-GENE-040801-246]
14. rhof ENSDARG00000054389, ENSDARG00000111798 15 1.693 - 0.728 - - - 0.965 - - - ras homolog family member F [Source:ZFIN;Acc:ZDB-GENE-050522-280]
15. she ENSDARG00000087956 941 1.683 - 0.812 - - - - 0.871 - - Src homology 2 domain containing E [Source:ZFIN;Acc:ZDB-GENE-090915-6]
16. cyp1a ENSDARG00000098315 273 1.658 - 0.849 - - - - 0.809 - - cytochrome P450, family 1, subfamily A [Source:ZFIN;Acc:ZDB-GENE-011219-1]
17. fbxo15 ENSDARG00000016897 18 1.656 0.872 0.784 - - - - - - - F-box protein 15 [Source:ZFIN;Acc:ZDB-GENE-080416-4]
18. nrros ENSDARG00000071491, ENSDARG00000112102 64 1.648 0.815 - - - - - 0.833 - - negative regulator of reactive oxygen species [Source:ZFIN;Acc:ZDB-GENE-040808-36]
19. hcfc1a ENSDARG00000015990, ENSDARG00000111404 59 1.639 - 0.730 0.909 - - - - - - host cell factor C1a [Source:ZFIN;Acc:ZDB-GENE-030912-10]
20. si:ch211-225b11.4 ENSDARG00000093563 42 1.628 - - - 0.725 - 0.903 - - - si:ch211-225b11.4 [Source:ZFIN;Acc:ZDB-GENE-060526-114]
21. atp2b1b ENSDARG00000007788 56 1.626 - - 0.863 0.763 - - - - - ATPase plasma membrane Ca2+ transporting 1b [Source:ZFIN;Acc:ZDB-GENE-080409-1]
22. SNORA62 SNORA62 39 1.61 0.815 0.795 - - - - - - -
23. cdh5 ENSDARG00000075549 2288 1.609 0.834 - - - - - 0.775 - - cadherin 5 [Source:ZFIN;Acc:ZDB-GENE-040816-1]
24. rnf41l ENSDARG00000073918 329 1.608 0.724 - 0.884 - - - - - - ring finger protein 41, like [Source:ZFIN;Acc:ZDB-GENE-030131-9441]
25. arhgef28 ENSDARG00000060415 142 1.608 0.824 - - 0.784 - - - - - Rho guanine nucleotide exchange factor (GEF) 28 [Source:ZFIN;Acc:ZDB-GENE-060531-28]
26. flj11011l ENSDARG00000045360, ENSDARG00000114911 332 1.591 - - - 0.729 - - - 0.862 - hypothetical protein FLJ11011-like (H. sapiens) [Source:ZFIN;Acc:ZDB-GENE-050113-1]
27. rps6ka1 ENSDARG00000033437 366 1.578 - - 0.778 - - - - 0.800 - ribosomal protein S6 kinase a, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-060929-516]
28. lcn15 ENSDARG00000067851 140 1.575 0.815 - - - - 0.760 - - - lipocalin 15 [Source:ZFIN;Acc:ZDB-GENE-060825-349]
29. grxcr1 ENSDARG00000069865 22 1.571 - - - 0.769 - 0.802 - - - glutaredoxin, cysteine rich 1 [Source:ZFIN;Acc:ZDB-GENE-070424-166]
30. prcp ENSDARG00000037883 473 1.567 - 0.703 - - - - 0.864 - - prolylcarboxypeptidase (angiotensinase C) [Source:ZFIN;Acc:ZDB-GENE-040718-447]
31. aqp8a.1 ENSDARG00000045141, ENSDARG00000115150 830 1.565 - 0.712 - - - 0.853 - - - aquaporin 8a, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-040912-106]
32. GLDC ENSDARG00000035120 112 1.564 0.759 - - - - - 0.805 - - glycine dehydrogenase (decarboxylating) [Source:ZFIN;Acc:ZDB-GENE-030131-340]
33. ANKS3 ENSDARG00000038557 235 1.548 - 0.821 - - - 0.727 - - - ankyrin repeat and sterile alpha motif domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-080204-51]
34. gbas gbas 735 1.537 - - - 0.713 - - - 0.824 -
35. grm3 ENSDARG00000031712, ENSDARG00000110535 30 1.536 0.815 0.721 - - - - - - - glutamate receptor, metabotropic 3 [Source:ZFIN;Acc:ZDB-GENE-061009-13]
36. si:dkey-100h21.2 si:dkey-100h21.2 30 1.536 0.815 0.721 - - - - - - -
37. bmb ENSDARG00000096603 120 1.523 0.756 0.767 - - - - - - - brambleberry [Source:ZFIN;Acc:ZDB-GENE-030131-5577]
38. clec14a ENSDARG00000103533 718 1.515 0.744 - - - - - 0.771 - - C-type lectin domain containing 14A [Source:ZFIN;Acc:ZDB-GENE-030131-5536]
39. si:ch211-26b3.4 ENSDARG00000075491 50 1.513 - - 0.812 - - - - - 0.701 si:ch211-26b3.4 [Source:ZFIN;Acc:ZDB-GENE-081104-60]
40. par1 par1 564 1.511 - - - 0.731 - - - 0.780 -
41. kmo ENSDARG00000009160 7 1.503 - - - - - 0.800 0.703 - - kynurenine 3-monooxygenase [Source:ZFIN;Acc:ZDB-GENE-030424-4]
42. vsg1 1870 1.5 0.759 - - - - - 0.741 - - vessel-specific 1
43. mmp15a ENSDARG00000051962 932 1.499 - 0.735 - - - - - 0.764 - matrix metallopeptidase 15a [Source:ZFIN;Acc:ZDB-GENE-070817-4]
44. nsmce1 ENSDARG00000098780 289 1.489 - 0.783 - - - - 0.706 - - NSE1 homolog, SMC5-SMC6 complex component [Source:ZFIN;Acc:ZDB-GENE-040718-289]
45. mrc1a ENSDARG00000102100 1260 1.488 0.719 - - - - - 0.769 - - mannose receptor, C type 1a [Source:ZFIN;Acc:ZDB-GENE-090915-4]
46. vegfc ENSDARG00000069640 198 1.471 0.737 0.734 - - - - - - - vascular endothelial growth factor c [Source:ZFIN;Acc:ZDB-GENE-040303-4]
47. foxi1 ENSDARG00000104566 176 1.468 - 0.721 - - - - - 0.747 - forkhead box i1 [Source:ZFIN;Acc:ZDB-GENE-030505-1]
48. ITIH4 ITIH4 9 1.439 0.728 0.711 - - - - - - -
49. DIDO1 ENSDARG00000057940 312 1.434 - 0.705 0.729 - - - - - - death inducer-obliterator 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6117]
50. fmnl1a ENSDARG00000055713 57 1.425 - 0.721 - - - - 0.704 - - formin-like 1a [Source:ZFIN;Acc:ZDB-GENE-120215-83]
51. slc17a8 ENSDARG00000057728, ENSDARG00000109791 8 0.965 - - - - - 0.965 - - - solute carrier family 17 (vesicular glutamate transporter), member 8 [Source:ZFIN;Acc:ZDB-GENE-060503-416]
52. zap70 ENSDARG00000015752 1 0.965 - - - - - 0.965 - - - zeta chain of T cell receptor associated protein kinase 70 [Source:ZFIN;Acc:ZDB-GENE-050522-257]
53. sh3bp1 ENSDARG00000078119 5 0.965 - - - - - 0.965 - - - SH3-domain binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-121128-2]
54. ugt2a6 ENSDARG00000039501 5 0.965 - - - - - 0.965 - - - UDP glucuronosyltransferase 2 family, polypeptide A6 [Source:ZFIN;Acc:ZDB-GENE-081104-3]
55. si:dkey-33i11.1 ENSDARG00000053027 2 0.965 - - - - - 0.965 - - - si:dkey-33i11.1 [Source:ZFIN;Acc:ZDB-GENE-030131-4630]
56. KCNA2 KCNA2 66 0.965 - - - - - 0.965 - - -
57. EML4 7 0.965 - - - - - 0.965 - - - echinoderm microtubule associated protein like 4
58. gabrr2a ENSDARG00000052982 21 0.965 - - - - - 0.965 - - - gamma-aminobutyric acid (GABA) A receptor, rho 2a [Source:ZFIN;Acc:ZDB-GENE-060825-164]
59. LARS2 ENSDARG00000075337 181 0.965 - - - - - 0.965 - - - leucyl-tRNA synthetase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-070928-3]
60. tlx1 ENSDARG00000003965 67 0.965 - - - - - 0.965 - - - T cell leukemia homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-021021-2]
61. BX248122.1 ENSDARG00000112449 1 0.965 - - - - - 0.965 - - - gastrula zinc finger protein XlCGF57.1-like [Source:NCBI gene;Acc:103910472]
62. grtp1b ENSDARG00000030269 24 0.965 - - - - - 0.965 - - - growth hormone regulated TBC protein 1b [Source:ZFIN;Acc:ZDB-GENE-050417-346]
63. setd1bb ENSDARG00000077244 34 0.965 - - - - - 0.965 - - - SET domain containing 1B, b [Source:ZFIN;Acc:ZDB-GENE-080522-1]
64. CU855880.2 CU855880.2 3 0.965 - - - - - 0.965 - - -
65. fam136a ENSDARG00000098401 50 0.965 - - - - - 0.965 - - - family with sequence similarity 136, member A [Source:ZFIN;Acc:ZDB-GENE-040426-2729]
66. si:ch211-204a13.1 si:ch211-204a13.1 6 0.965 - - - - - 0.965 - - -
67. DYDC2 ENSDARG00000101848 2 0.965 - - - - - 0.965 - - - DPY30 domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-121030-3]
68. grk7a ENSDARG00000020602 10 0.965 - - - - - 0.965 - - - G protein-coupled receptor kinase 7a [Source:ZFIN;Acc:ZDB-GENE-050824-1]
69. CR388046.1_1 ENSDARG00000102930 1 0.965 - - - - - 0.965 - - -
70. si:ch211-67f13.7 ENSDARG00000077845 8 0.965 - - - - - 0.965 - - - si:ch211-67f13.7 [Source:ZFIN;Acc:ZDB-GENE-090313-126]
71. CST7 CST7 22 0.965 - - - - - 0.965 - - -
72. si:dkey-46g23.2 ENSDARG00000115817 11 0.965 - - - - - 0.965 - - - si:dkey-46g23.2 [Source:ZFIN;Acc:ZDB-GENE-070705-476]
73. cryba2a ENSDARG00000030349 1342 0.965 - - - - - 0.965 - - - crystallin, beta A2a [Source:ZFIN;Acc:ZDB-GENE-040625-8]
74. ENTPD5 ENTPD5 42 0.965 - - - - - 0.965 - - -
75. rhoh ENSDARG00000070121 1 0.965 - - - - - 0.965 - - - ras homolog family member H [Source:ZFIN;Acc:ZDB-GENE-060228-7]
76. TRIM14_3 TRIM14_3 7 0.965 - - - - - 0.965 - - -
77. traf1 ENSDARG00000069482 50 0.965 - - - - - 0.965 - - - TNF receptor-associated factor 1 [Source:ZFIN;Acc:ZDB-GENE-071120-4]
78. si:ch211-271e10.1 ENSDARG00000095735 15 0.965 - - - - - 0.965 - - - si:ch211-271e10.1 [Source:ZFIN;Acc:ZDB-GENE-060526-145]
79. cd8a ENSDARG00000044797 7 0.965 - - - - - 0.965 - - - CD8a molecule [Source:ZFIN;Acc:ZDB-GENE-060210-2]
80. si:dkey-43k4.4 si:dkey-43k4.4 4 0.965 - - - - - 0.965 - - -
81. mif4gdb ENSDARG00000102578 31 0.965 - - - - - 0.965 - - - MIF4G domain containing b [Source:ZFIN;Acc:ZDB-GENE-050227-7]
82. zgc:113389 zgc:113389 123 0.965 - - - - - 0.965 - - -
83. MFRP MFRP 6 0.965 - - - - - 0.965 - - -
84. mstna ENSDARG00000042947 1 0.965 - - - - - 0.965 - - - myostatin a [Source:ZFIN;Acc:ZDB-GENE-050208-735]
85. si:ch211-157l15.4 si:ch211-157l15.4 92 0.965 - - - - - 0.965 - - -
86. TMC5 ENSDARG00000013252 22 0.965 - - - - - 0.965 - - - transmembrane channel like 5 [Source:ZFIN;Acc:ZDB-GENE-120411-6]
87. tshb tshb 7 0.965 - - - - - 0.965 - - -
88. DXO ENSDARG00000036852 16 0.965 - - - - - 0.965 - - - decapping exoribonuclease [Source:HGNC Symbol;Acc:HGNC:2992]
89. uvssa ENSDARG00000100916 73 0.965 - - - - - 0.965 - - - UV-stimulated scaffold protein A [Source:ZFIN;Acc:ZDB-GENE-091204-111]
90. CU638695.1 CU638695.1 90 0.965 - - - - - 0.965 - - -
91. SNORD65 SNORD65 35 0.965 - - - - - 0.965 - - -
92. ZNF135_4 ZNF135_4 3 0.965 - - - - - 0.965 - - -
93. si:dkey-126g1.6 si:dkey-126g1.6 1 0.965 - - - - - 0.965 - - -
94. pnp6 ENSDARG00000040942, ENSDARG00000114753 10 0.965 - - - - - 0.965 - - - purine nucleoside phosphorylase 6 [Source:ZFIN;Acc:ZDB-GENE-040426-1800]
95. BX324215.1 BX324215.1 2 0.965 - - - - - 0.965 - - -
96. SNORD65_1 SNORD65_1 25 0.965 - - - - - 0.965 - - -
97. ttr ENSDARG00000037191 11 0.965 - - - - - 0.965 - - - transthyretin (prealbumin, amyloidosis type I) [Source:ZFIN;Acc:ZDB-GENE-040927-14]
98. lama3 ENSDARG00000071462 1 0.965 - - - - - 0.965 - - - laminin, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-050208-475]
99. cyb561 ENSDARG00000038176 55 0.965 - - - - - 0.965 - - - cytochrome b561 [Source:ZFIN;Acc:ZDB-GENE-070713-3]
100. BX324215.3 BX324215.3 12 0.965 - - - - - 0.965 - - -

There are 1264 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA