Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for shank3b

Gene Name Gene ID Reads Annotation
shank3b ENSDARG00000063054 148 SH3 and multiple ankyrin repeat domains 3b [Source:ZFIN;Acc:ZDB-GENE-041210-74]










Genes with expression patterns similar to shank3b

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. shank3b ENSDARG00000063054 148 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SH3 and multiple ankyrin repeat domains 3b [Source:ZFIN;Acc:ZDB-GENE-041210-74]
2. LSM5 ENSDARG00000071573 371 2.348 - 0.735 - - - - 0.762 0.851 - LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:ZFIN;Acc:ZDB-GENE-070822-23]
3. BX511006.2 BX511006.2 29 1.792 - - 0.842 - - - - 0.950 -
4. fermt3b ENSDARG00000030938 17 1.78 0.815 - - - - 0.965 - - - fermitin family member 3b [Source:ZFIN;Acc:ZDB-GENE-040426-1366]
5. tek ENSDARG00000028663 167 1.775 0.868 - - - - 0.907 - - - TEK tyrosine kinase, endothelial [Source:ZFIN;Acc:ZDB-GENE-990415-56]
6. rpap3 ENSDARG00000087962 22 1.771 - - 0.806 - - 0.965 - - - RNA polymerase II associated protein 3 [Source:ZFIN;Acc:ZDB-GENE-040426-928]
7. ba1 69 1.754 - - - - - 0.800 - 0.954 - ba1 globin
8. psmd2 ENSDARG00000103190 141 1.73 - - - - - 0.800 - 0.930 - proteasome 26S subunit, non-ATPase 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1480]
9. snx33 ENSDARG00000014954 45 1.722 0.757 - - - - 0.965 - - - sorting nexin 33 [Source:ZFIN;Acc:ZDB-GENE-041111-209]
10. BX005085.2 ENSDARG00000098122 196 1.716 - 0.726 - - - 0.990 - - -
11. kitb ENSDARG00000056133, ENSDARG00000113747 10 1.697 0.732 - - - - 0.965 - - - v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog b [Source:ZFIN;Acc:ZDB-GENE-050916-2]
12. macrod1 ENSDARG00000029609 66 1.697 - 0.732 - - - 0.965 - - - MACRO domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040912-100]
13. elac1 ENSDARG00000045095, ENSDARG00000117014 244 1.693 0.781 - - - - - - 0.912 - elaC ribonuclease Z 1 [Source:ZFIN;Acc:ZDB-GENE-040801-246]
14. rhof ENSDARG00000054389, ENSDARG00000111798 15 1.693 - 0.728 - - - 0.965 - - - ras homolog family member F [Source:ZFIN;Acc:ZDB-GENE-050522-280]
15. she ENSDARG00000087956 941 1.683 - 0.812 - - - - 0.871 - - Src homology 2 domain containing E [Source:ZFIN;Acc:ZDB-GENE-090915-6]
16. cyp1a ENSDARG00000098315 273 1.658 - 0.849 - - - - 0.809 - - cytochrome P450, family 1, subfamily A [Source:ZFIN;Acc:ZDB-GENE-011219-1]
17. fbxo15 ENSDARG00000016897 18 1.656 0.872 0.784 - - - - - - - F-box protein 15 [Source:ZFIN;Acc:ZDB-GENE-080416-4]
18. nrros ENSDARG00000071491, ENSDARG00000112102 64 1.648 0.815 - - - - - 0.833 - - negative regulator of reactive oxygen species [Source:ZFIN;Acc:ZDB-GENE-040808-36]
19. hcfc1a ENSDARG00000015990, ENSDARG00000111404 59 1.639 - 0.730 0.909 - - - - - - host cell factor C1a [Source:ZFIN;Acc:ZDB-GENE-030912-10]
20. si:ch211-225b11.4 ENSDARG00000093563 42 1.628 - - - 0.725 - 0.903 - - - si:ch211-225b11.4 [Source:ZFIN;Acc:ZDB-GENE-060526-114]
21. atp2b1b ENSDARG00000007788 56 1.626 - - 0.863 0.763 - - - - - ATPase plasma membrane Ca2+ transporting 1b [Source:ZFIN;Acc:ZDB-GENE-080409-1]
22. SNORA62 SNORA62 39 1.61 0.815 0.795 - - - - - - -
23. cdh5 ENSDARG00000075549 2288 1.609 0.834 - - - - - 0.775 - - cadherin 5 [Source:ZFIN;Acc:ZDB-GENE-040816-1]
24. arhgef28 ENSDARG00000060415 142 1.608 0.824 - - 0.784 - - - - - Rho guanine nucleotide exchange factor (GEF) 28 [Source:ZFIN;Acc:ZDB-GENE-060531-28]
25. rnf41l ENSDARG00000073918 329 1.608 0.724 - 0.884 - - - - - - ring finger protein 41, like [Source:ZFIN;Acc:ZDB-GENE-030131-9441]
26. flj11011l ENSDARG00000045360, ENSDARG00000114911 332 1.591 - - - 0.729 - - - 0.862 - hypothetical protein FLJ11011-like (H. sapiens) [Source:ZFIN;Acc:ZDB-GENE-050113-1]
27. rps6ka1 ENSDARG00000033437 366 1.578 - - 0.778 - - - - 0.800 - ribosomal protein S6 kinase a, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-060929-516]
28. lcn15 ENSDARG00000067851 140 1.575 0.815 - - - - 0.760 - - - lipocalin 15 [Source:ZFIN;Acc:ZDB-GENE-060825-349]
29. grxcr1 ENSDARG00000069865 22 1.571 - - - 0.769 - 0.802 - - - glutaredoxin, cysteine rich 1 [Source:ZFIN;Acc:ZDB-GENE-070424-166]
30. prcp ENSDARG00000037883 473 1.567 - 0.703 - - - - 0.864 - - prolylcarboxypeptidase (angiotensinase C) [Source:ZFIN;Acc:ZDB-GENE-040718-447]
31. aqp8a.1 ENSDARG00000045141, ENSDARG00000115150 830 1.565 - 0.712 - - - 0.853 - - - aquaporin 8a, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-040912-106]
32. GLDC ENSDARG00000035120 112 1.564 0.759 - - - - - 0.805 - - glycine dehydrogenase (decarboxylating) [Source:ZFIN;Acc:ZDB-GENE-030131-340]
33. ANKS3 ENSDARG00000038557 235 1.548 - 0.821 - - - 0.727 - - - ankyrin repeat and sterile alpha motif domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-080204-51]
34. gbas gbas 735 1.537 - - - 0.713 - - - 0.824 -
35. si:dkey-100h21.2 si:dkey-100h21.2 30 1.536 0.815 0.721 - - - - - - -
36. grm3 ENSDARG00000031712, ENSDARG00000110535 30 1.536 0.815 0.721 - - - - - - - glutamate receptor, metabotropic 3 [Source:ZFIN;Acc:ZDB-GENE-061009-13]
37. bmb ENSDARG00000096603 120 1.523 0.756 0.767 - - - - - - - brambleberry [Source:ZFIN;Acc:ZDB-GENE-030131-5577]
38. clec14a ENSDARG00000103533 718 1.515 0.744 - - - - - 0.771 - - C-type lectin domain containing 14A [Source:ZFIN;Acc:ZDB-GENE-030131-5536]
39. si:ch211-26b3.4 ENSDARG00000075491 50 1.513 - - 0.812 - - - - - 0.701 si:ch211-26b3.4 [Source:ZFIN;Acc:ZDB-GENE-081104-60]
40. par1 par1 564 1.511 - - - 0.731 - - - 0.780 -
41. kmo ENSDARG00000009160 7 1.503 - - - - - 0.800 0.703 - - kynurenine 3-monooxygenase [Source:ZFIN;Acc:ZDB-GENE-030424-4]
42. vsg1 1870 1.5 0.759 - - - - - 0.741 - - vessel-specific 1
43. mmp15a ENSDARG00000051962 932 1.499 - 0.735 - - - - - 0.764 - matrix metallopeptidase 15a [Source:ZFIN;Acc:ZDB-GENE-070817-4]
44. nsmce1 ENSDARG00000098780 289 1.489 - 0.783 - - - - 0.706 - - NSE1 homolog, SMC5-SMC6 complex component [Source:ZFIN;Acc:ZDB-GENE-040718-289]
45. mrc1a ENSDARG00000102100 1260 1.488 0.719 - - - - - 0.769 - - mannose receptor, C type 1a [Source:ZFIN;Acc:ZDB-GENE-090915-4]
46. vegfc ENSDARG00000069640 198 1.471 0.737 0.734 - - - - - - - vascular endothelial growth factor c [Source:ZFIN;Acc:ZDB-GENE-040303-4]
47. foxi1 ENSDARG00000104566 176 1.468 - 0.721 - - - - - 0.747 - forkhead box i1 [Source:ZFIN;Acc:ZDB-GENE-030505-1]
48. ITIH4 ITIH4 9 1.439 0.728 0.711 - - - - - - -
49. DIDO1 ENSDARG00000057940 312 1.434 - 0.705 0.729 - - - - - - death inducer-obliterator 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6117]
50. fmnl1a ENSDARG00000055713 57 1.425 - 0.721 - - - - 0.704 - - formin-like 1a [Source:ZFIN;Acc:ZDB-GENE-120215-83]
51. CR388046.1_1 ENSDARG00000102930 1 0.965 - - - - - 0.965 - - -
52. grtp1b ENSDARG00000030269 24 0.965 - - - - - 0.965 - - - growth hormone regulated TBC protein 1b [Source:ZFIN;Acc:ZDB-GENE-050417-346]
53. BX649314.1 BX649314.1 3 0.965 - - - - - 0.965 - - -
54. MSH4 ENSDARG00000075826 37 0.965 - - - - - 0.965 - - - mutS homolog 4 [Source:ZFIN;Acc:ZDB-GENE-131121-643]
55. rassf2b ENSDARG00000044044, ENSDARG00000110241 26 0.965 - - - - - 0.965 - - - Ras association (RalGDS/AF-6) domain family member 2b [Source:ZFIN;Acc:ZDB-GENE-041221-6]
56. DPYSL2 DPYSL2 4 0.965 - - - - - 0.965 - - -
57. insl5b ENSDARG00000069294 1 0.965 - - - - - 0.965 - - - insulin-like 5b [Source:ZFIN;Acc:ZDB-GENE-070122-5]
58. mybpc2a ENSDARG00000030157 11 0.965 - - - - - 0.965 - - - myosin binding protein C, fast type a [Source:ZFIN;Acc:ZDB-GENE-060901-1]
59. cd8a ENSDARG00000044797 7 0.965 - - - - - 0.965 - - - CD8a molecule [Source:ZFIN;Acc:ZDB-GENE-060210-2]
60. adgra1a ENSDARG00000054177 19 0.965 - - - - - 0.965 - - - adhesion G protein-coupled receptor A1a [Source:ZFIN;Acc:ZDB-GENE-130603-101]
61. si:ch211-271e10.1 ENSDARG00000095735 15 0.965 - - - - - 0.965 - - - si:ch211-271e10.1 [Source:ZFIN;Acc:ZDB-GENE-060526-145]
62. si:ch211-106h4.5 ENSDARG00000095059 1 0.965 - - - - - 0.965 - - - si:ch211-106h4.5 [Source:ZFIN;Acc:ZDB-GENE-070705-15]
63. zgc:174945 ENSDARG00000062057, ENSDARG00000112119 3 0.965 - - - - - 0.965 - - - zgc:174945 [Source:ZFIN;Acc:ZDB-GENE-080204-80]
64. tlx1 ENSDARG00000003965 67 0.965 - - - - - 0.965 - - - T cell leukemia homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-021021-2]
65. si:dkey-40j3.1 si:dkey-40j3.1 1 0.965 - - - - - 0.965 - - -
66. DYDC2 ENSDARG00000101848 2 0.965 - - - - - 0.965 - - - DPY30 domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-121030-3]
67. rs1 rs1 70 0.965 - - - - - 0.965 - - -
68. BX248122.1 ENSDARG00000112449 1 0.965 - - - - - 0.965 - - - gastrula zinc finger protein XlCGF57.1-like [Source:NCBI gene;Acc:103910472]
69. SOWAHD ENSDARG00000087152, ENSDARG00000109642 24 0.965 - - - - - 0.965 - - - sosondowah ankyrin repeat domain family d [Source:ZFIN;Acc:ZDB-GENE-120215-42]
70. TGFBR3L TGFBR3L 16 0.965 - - - - - 0.965 - - -
71. RNF222 24 0.965 - - - - - 0.965 - - - ring finger protein 222
72. TRIM14_3 TRIM14_3 7 0.965 - - - - - 0.965 - - -
73. ttr ENSDARG00000037191 11 0.965 - - - - - 0.965 - - - transthyretin (prealbumin, amyloidosis type I) [Source:ZFIN;Acc:ZDB-GENE-040927-14]
74. akap1a ENSDARG00000089802 5 0.965 - - - - - 0.965 - - - A kinase (PRKA) anchor protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-5980]
75. bckdhb ENSDARG00000014676 17 0.965 - - - - - 0.965 - - - branched chain keto acid dehydrogenase E1, beta polypeptide [Source:ZFIN;Acc:ZDB-GENE-030124-2]
76. itga11b ENSDARG00000007950 17 0.965 - - - - - 0.965 - - - integrin, alpha 11b [Source:ZFIN;Acc:ZDB-GENE-071009-4]
77. chrna9 ENSDARG00000054680 4 0.965 - - - - - 0.965 - - - cholinergic receptor, nicotinic, alpha 9 [Source:ZFIN;Acc:ZDB-GENE-090312-63]
78. DXO ENSDARG00000036852 16 0.965 - - - - - 0.965 - - - decapping exoribonuclease [Source:HGNC Symbol;Acc:HGNC:2992]
79. ENTPD5 ENTPD5 42 0.965 - - - - - 0.965 - - -
80. CST7 CST7 22 0.965 - - - - - 0.965 - - -
81. BX511021.2 ENSDARG00000097646 5 0.965 - - - - - 0.965 - - -
82. CU468012.1 ENSDARG00000077794 3 0.965 - - - - - 0.965 - - -
83. si:dkey-46g23.2 ENSDARG00000115817 11 0.965 - - - - - 0.965 - - - si:dkey-46g23.2 [Source:ZFIN;Acc:ZDB-GENE-070705-476]
84. dis3 ENSDARG00000060559, ENSDARG00000110345 92 0.965 - - - - - 0.965 - - - DIS3 exosome endoribonuclease and 3'-5' exoribonuclease [Source:ZFIN;Acc:ZDB-GENE-080213-3]
85. polr3b ENSDARG00000062915, ENSDARG00000113895 144 0.965 - - - - - 0.965 - - - polymerase (RNA) III (DNA directed) polypeptide B [Source:ZFIN;Acc:ZDB-GENE-030131-2887]
86. mstna ENSDARG00000042947 1 0.965 - - - - - 0.965 - - - myostatin a [Source:ZFIN;Acc:ZDB-GENE-050208-735]
87. zgc:113389 zgc:113389 123 0.965 - - - - - 0.965 - - -
88. cdc14aa ENSDARG00000013858 18 0.965 - - - - - 0.965 - - - cell division cycle 14Aa [Source:ZFIN;Acc:ZDB-GENE-040426-1214]
89. lama3 ENSDARG00000071462 1 0.965 - - - - - 0.965 - - - laminin, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-050208-475]
90. si:dkey-43k4.4 si:dkey-43k4.4 4 0.965 - - - - - 0.965 - - -
91. si:dkeyp-68b7.5 ENSDARG00000079930 14 0.965 - - - - - 0.965 - - - si:dkeyp-68b7.5 [Source:ZFIN;Acc:ZDB-GENE-070912-670]
92. hmgcra ENSDARG00000052734, ENSDARG00000109336 45 0.965 - - - - - 0.965 - - - 3-hydroxy-3-methylglutaryl-CoA reductase a [Source:ZFIN;Acc:ZDB-GENE-040401-2]
93. KCNA2 KCNA2 66 0.965 - - - - - 0.965 - - -
94. rhoh ENSDARG00000070121 1 0.965 - - - - - 0.965 - - - ras homolog family member H [Source:ZFIN;Acc:ZDB-GENE-060228-7]
95. or111-3 ENSDARG00000086633 1 0.965 - - - - - 0.965 - - - odorant receptor, family D, subfamily 111, member 3 [Source:ZFIN;Acc:ZDB-GENE-010308-17]
96. gtf3c2 ENSDARG00000004574 153 0.965 - - - - - 0.965 - - - general transcription factor IIIC, polypeptide 2, beta [Source:ZFIN;Acc:ZDB-GENE-041014-349]
97. BX936386.1 ENSDARG00000097166 5 0.965 - - - - - 0.965 - - -
98. CU638695.1 CU638695.1 90 0.965 - - - - - 0.965 - - -
99. FAM150B FAM150B 29 0.965 - - - - - 0.965 - - -
100. zgc:152670 ENSDARG00000017038, ENSDARG00000117151 587 0.965 - - - - - 0.965 - - - zgc:152670 [Source:ZFIN;Acc:ZDB-GENE-060929-954]

There are 1264 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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